Wall clock time and date at job start Sun Mar 29 2020 21:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00096 * 2 1 4 4 H 1.48494 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47158 * 300.00141 * 3 2 1 6 6 H 1.48497 * 109.46853 * 60.00025 * 3 2 1 7 7 C 1.37881 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99865 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00240 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47170 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47170 * 180.02562 * 10 9 7 12 12 C 1.38425 * 120.02136 * 90.00332 * 11 10 9 13 13 F 1.35101 * 120.01402 * 359.70506 * 12 11 10 14 14 C 1.38476 * 119.97328 * 179.97438 * 12 11 10 15 15 C 1.38207 * 120.02410 * 0.02562 * 14 12 11 16 16 C 1.38207 * 120.05360 * 359.97438 * 15 14 12 17 17 C 1.38412 * 120.02814 * 269.97965 * 11 10 9 18 18 F 1.35096 * 120.01191 * 0.02562 * 17 11 10 19 19 H 0.97002 * 119.99890 * 359.97438 * 1 2 3 20 20 H 1.09008 * 109.46687 * 60.00457 * 9 7 2 21 21 H 1.08994 * 109.47291 * 300.01061 * 9 7 2 22 22 H 1.09008 * 109.46866 * 60.00660 * 10 9 7 23 23 H 1.09006 * 109.47655 * 300.00521 * 10 9 7 24 24 H 1.08001 * 119.98752 * 179.97438 * 14 12 11 25 25 H 1.08000 * 119.97200 * 180.02562 * 15 14 12 26 26 H 1.07995 * 119.99247 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4917 -4.9672 -0.0025 12 6 1.1449 -5.5661 -1.2013 13 9 1.4767 -4.9779 -2.3714 14 6 0.4530 -6.7656 -1.2007 15 6 0.1082 -7.3645 -0.0038 16 6 0.4539 -6.7674 1.1938 17 6 1.1462 -5.5682 1.1956 18 9 1.4840 -4.9847 2.3663 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5567 -0.8904 21 1 0.6246 -2.5571 0.8895 22 1 2.8725 -3.6048 0.8878 23 1 2.8713 -3.6040 -0.8922 24 1 0.1820 -7.2329 -2.1359 25 1 -0.4311 -8.3002 -0.0043 26 1 0.1836 -7.2361 2.1284 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084931540.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:34 Heat of formation + Delta-G solvation = -84.682458 kcal Electronic energy + Delta-G solvation = -13485.945769 eV Core-core repulsion = 10778.914281 eV Total energy + Delta-G solvation = -2707.031488 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.58967 -48.58534 -38.58530 -34.22204 -32.16716 -30.04312 -28.98944 -25.19926 -22.55522 -22.33601 -20.34399 -17.80450 -16.95936 -16.46493 -15.55031 -15.49892 -15.25014 -14.87341 -14.43653 -14.05998 -13.28938 -12.90568 -12.47784 -12.36143 -11.82141 -11.60151 -11.45375 -10.92756 -10.90960 -10.52905 -9.90275 -9.73949 -9.11800 -8.51795 -8.35029 -8.33232 -5.99377 -4.02339 1.20276 1.28595 3.32571 3.39554 3.44114 3.60965 4.23273 4.46693 4.68910 4.84987 4.97719 5.12969 5.36567 5.38394 5.95537 5.97138 6.22288 6.23375 6.31603 6.53952 6.55226 6.88467 7.10017 7.65151 7.76318 7.98813 8.39121 9.03684 9.61523 11.12069 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.042821 B = 0.008160 C = 0.007436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.729909 B = 3430.554002 C = 3764.546510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.080 4.080 11 C -0.129 4.129 12 C 0.125 3.875 13 F -0.128 7.128 14 C -0.167 4.167 15 C -0.082 4.082 16 C -0.167 4.167 17 C 0.125 3.875 18 F -0.128 7.128 19 H 0.260 0.740 20 H 0.018 0.982 21 H 0.018 0.982 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.137 0.863 25 H 0.137 0.863 26 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.654 -14.112 -0.006 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.118 4.118 11 C -0.131 4.131 12 C 0.106 3.894 13 F -0.106 7.106 14 C -0.186 4.186 15 C -0.100 4.100 16 C -0.186 4.186 17 C 0.106 3.894 18 F -0.106 7.106 19 H 0.070 0.930 20 H 0.037 0.963 21 H 0.037 0.963 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.154 0.846 25 H 0.155 0.845 26 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.536 -13.941 -0.007 13.951 hybrid contribution 0.428 1.158 0.001 1.235 sum 0.964 -12.783 -0.006 12.819 Atomic orbital electron populations 1.69985 1.06098 1.26557 1.50732 1.25023 0.94858 0.99303 0.95215 0.86501 0.80114 0.83622 0.77576 1.19667 1.20976 1.20973 1.21233 0.93111 0.90732 1.50762 0.92425 1.19065 0.93568 0.90382 0.97560 1.20787 0.98692 0.89891 1.02380 1.20473 1.02275 0.99557 0.90801 1.17257 0.98793 0.92375 0.80991 1.91520 1.90325 1.83654 1.45111 1.21127 1.02004 0.95554 0.99911 1.20668 0.98942 0.99704 0.90681 1.21127 1.02026 0.95538 0.99904 1.17253 0.98761 0.92423 0.80976 1.91518 1.90165 1.83870 1.45061 0.93001 0.96335 0.96330 0.91268 0.91271 0.84559 0.84541 0.84560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.52 13.29 55.43 0.74 -26.79 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 15 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 15 5 H -0.28 -6.91 7.11 56.52 0.40 -6.50 15 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 15 8 H 0.06 1.62 7.74 -52.48 -0.41 1.22 15 9 C 0.03 0.85 4.95 -27.89 -0.14 0.71 15 10 C -0.08 -1.77 4.93 -27.89 -0.14 -1.91 15 11 C -0.13 -2.47 5.15 -104.49 -0.54 -3.01 15 12 C 0.13 2.17 7.24 -39.42 -0.29 1.89 15 13 F -0.13 -2.38 16.48 2.25 0.04 -2.34 15 14 C -0.17 -2.24 10.03 -39.50 -0.40 -2.64 15 15 C -0.08 -0.96 10.04 -39.60 -0.40 -1.36 15 16 C -0.17 -2.24 10.03 -39.50 -0.40 -2.64 15 17 C 0.13 2.17 7.24 -39.43 -0.29 1.89 15 18 F -0.13 -2.38 16.48 2.25 0.04 -2.34 15 19 H 0.26 7.50 8.31 -40.82 -0.34 7.16 15 20 H 0.02 0.53 8.14 -51.92 -0.42 0.11 15 21 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 22 H 0.07 1.49 7.64 -51.92 -0.40 1.10 15 23 H 0.07 1.49 7.64 -51.93 -0.40 1.10 15 24 H 0.14 1.45 8.06 -52.49 -0.42 1.03 15 25 H 0.14 1.09 8.06 -52.49 -0.42 0.67 15 26 H 0.14 1.45 8.06 -52.49 -0.42 1.03 15 LS Contribution 243.06 15.07 3.66 3.66 Total: -1.00 -31.38 243.06 -5.98 -37.36 By element: Atomic # 1 Polarization: -3.19 SS G_CDS: -2.45 Total: -5.64 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -2.98 Total: -20.96 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: 0.74 Total: -26.79 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.07 Total: -4.69 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.38 -5.98 -37.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084931540.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.320 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds