Wall clock time and date at job start Sun Mar 29 2020 21:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00096 * 2 1 4 4 H 1.48494 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47158 * 300.00141 * 3 2 1 6 6 H 1.48497 * 109.46853 * 60.00025 * 3 2 1 7 7 C 1.37881 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99865 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00240 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47170 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47170 * 180.02562 * 10 9 7 12 12 C 1.38425 * 120.02136 * 90.00332 * 11 10 9 13 13 F 1.35101 * 120.01402 * 359.70506 * 12 11 10 14 14 C 1.38476 * 119.97328 * 179.97438 * 12 11 10 15 15 C 1.38207 * 120.02410 * 0.02562 * 14 12 11 16 16 C 1.38207 * 120.05360 * 359.97438 * 15 14 12 17 17 C 1.38412 * 120.02814 * 269.97965 * 11 10 9 18 18 F 1.35096 * 120.01191 * 0.02562 * 17 11 10 19 19 H 0.97002 * 119.99890 * 359.97438 * 1 2 3 20 20 H 1.09008 * 109.46687 * 60.00457 * 9 7 2 21 21 H 1.08994 * 109.47291 * 300.01061 * 9 7 2 22 22 H 1.09008 * 109.46866 * 60.00660 * 10 9 7 23 23 H 1.09006 * 109.47655 * 300.00521 * 10 9 7 24 24 H 1.08001 * 119.98752 * 179.97438 * 14 12 11 25 25 H 1.08000 * 119.97200 * 180.02562 * 15 14 12 26 26 H 1.07995 * 119.99247 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4917 -4.9672 -0.0025 12 6 1.1449 -5.5661 -1.2013 13 9 1.4767 -4.9779 -2.3714 14 6 0.4530 -6.7656 -1.2007 15 6 0.1082 -7.3645 -0.0038 16 6 0.4539 -6.7674 1.1938 17 6 1.1462 -5.5682 1.1956 18 9 1.4840 -4.9847 2.3663 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5567 -0.8904 21 1 0.6246 -2.5571 0.8895 22 1 2.8725 -3.6048 0.8878 23 1 2.8713 -3.6040 -0.8922 24 1 0.1820 -7.2329 -2.1359 25 1 -0.4311 -8.3002 -0.0043 26 1 0.1836 -7.2361 2.1284 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084931540.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:34 Heat of formation + Delta-G solvation = -103.031776 kcal Electronic energy + Delta-G solvation = -13486.741455 eV Core-core repulsion = 10778.914281 eV Total energy + Delta-G solvation = -2707.827174 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.95496 -49.94905 -39.79972 -36.12848 -34.09606 -31.20292 -30.72519 -27.10486 -24.05667 -23.76981 -22.03240 -19.09379 -18.62647 -18.28995 -16.99387 -16.70737 -16.54500 -16.47265 -16.25743 -15.37270 -14.84559 -14.79967 -14.25907 -13.66637 -13.51564 -13.00487 -13.00029 -12.73629 -12.57900 -12.19906 -11.90222 -11.74646 -11.27072 -10.62795 -9.71682 -9.70068 -8.25448 -6.38514 0.02589 0.07754 1.37183 1.38416 1.52209 2.36799 2.45410 3.00706 3.07258 3.50000 3.66688 3.76887 3.97287 4.28922 4.48388 4.63187 4.82311 4.98637 5.04350 5.08276 5.11144 5.22671 5.37964 5.56737 5.73428 5.86850 6.14029 6.76379 7.31090 8.87037 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.042821 B = 0.008160 C = 0.007436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.729909 B = 3430.554002 C = 3764.546510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.062 0.938 9 C 0.041 3.959 10 C -0.067 4.067 11 C -0.167 4.167 12 C 0.099 3.901 13 F -0.145 7.145 14 C -0.153 4.153 15 C -0.057 4.057 16 C -0.153 4.153 17 C 0.099 3.901 18 F -0.145 7.145 19 H 0.266 0.734 20 H -0.012 1.012 21 H -0.012 1.012 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.171 0.829 25 H 0.192 0.808 26 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 -15.805 -0.006 15.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.080 0.920 9 C 0.004 3.996 10 C -0.104 4.104 11 C -0.169 4.169 12 C 0.080 3.920 13 F -0.123 7.123 14 C -0.172 4.172 15 C -0.075 4.075 16 C -0.172 4.172 17 C 0.080 3.920 18 F -0.123 7.123 19 H 0.074 0.926 20 H 0.007 0.993 21 H 0.007 0.993 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.188 0.812 25 H 0.209 0.791 26 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.297 -15.650 -0.007 15.652 hybrid contribution 0.428 1.560 0.001 1.618 sum 0.725 -14.089 -0.006 14.108 Atomic orbital electron populations 1.70118 1.07954 1.27957 1.51290 1.26046 0.95841 1.03596 0.94304 0.85300 0.78987 0.78165 0.78000 1.18498 1.20043 1.20032 1.21669 0.93603 0.92059 1.51209 0.91992 1.18847 0.93808 0.92398 0.94521 1.20409 0.97700 0.90413 1.01895 1.20301 1.04671 0.99089 0.92806 1.17660 1.00450 0.94089 0.79832 1.91469 1.90759 1.84298 1.45808 1.21591 0.99701 0.93505 1.02395 1.21337 0.96669 1.00583 0.88880 1.21591 0.99724 0.93491 1.02387 1.17656 1.00411 0.94140 0.79818 1.91468 1.90602 1.84508 1.45755 0.92559 0.99322 0.99314 0.91664 0.91670 0.81151 0.79070 0.81151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.03 13.29 21.45 0.28 -58.74 15 2 C 0.00 0.00 5.46 84.65 0.46 0.46 15 3 Si 0.97 45.80 29.54 68.60 2.03 47.83 15 4 H -0.26 -11.73 7.11 99.48 0.71 -11.03 15 5 H -0.27 -12.51 7.11 99.48 0.71 -11.81 15 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 15 7 C -0.55 -33.09 9.11 25.60 0.23 -32.86 15 8 H 0.06 3.58 7.74 -2.91 -0.02 3.56 15 9 C 0.04 2.38 4.95 29.85 0.15 2.53 15 10 C -0.07 -3.12 4.93 29.85 0.15 -2.98 15 11 C -0.17 -6.56 5.15 -19.78 -0.10 -6.66 15 12 C 0.10 3.41 7.24 22.37 0.16 3.57 15 13 F -0.14 -5.54 16.48 44.97 0.74 -4.80 15 14 C -0.15 -3.60 10.03 22.32 0.22 -3.38 15 15 C -0.06 -1.05 10.04 22.25 0.22 -0.83 15 16 C -0.15 -3.60 10.03 22.32 0.22 -3.38 15 17 C 0.10 3.41 7.24 22.37 0.16 3.58 15 18 F -0.14 -5.53 16.48 44.97 0.74 -4.79 15 19 H 0.27 15.58 8.31 -92.71 -0.77 14.81 15 20 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 15 21 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 15 22 H 0.06 3.00 7.64 -2.38 -0.02 2.98 15 23 H 0.06 2.99 7.64 -2.38 -0.02 2.98 15 24 H 0.17 2.83 8.06 -2.91 -0.02 2.81 15 25 H 0.19 1.56 8.06 -2.91 -0.02 1.54 15 26 H 0.17 2.83 8.06 -2.91 -0.02 2.81 15 Total: -1.00 -71.94 243.06 6.86 -65.08 By element: Atomic # 1 Polarization: -5.81 SS G_CDS: 1.18 Total: -4.63 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 1.88 Total: -39.95 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.28 Total: -58.74 kcal Atomic # 9 Polarization: -11.07 SS G_CDS: 1.48 Total: -9.59 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -71.94 6.86 -65.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084931540.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.950 kcal (2) G-P(sol) polarization free energy of solvation -71.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds