Wall clock time and date at job start Sun Mar 29 2020 21:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.38207 * 119.97767 * 269.72585 * 11 10 9 13 13 C 1.38477 * 120.02736 * 179.76369 * 12 11 10 14 14 F 1.35095 * 120.01399 * 180.27280 * 13 12 11 15 15 C 1.38420 * 119.96945 * 0.53421 * 13 12 11 16 16 C 1.38415 * 119.95285 * 359.71683 * 15 13 12 17 17 F 1.35099 * 120.01394 * 179.97438 * 16 15 13 18 18 C 1.38216 * 119.97543 * 89.99905 * 11 10 9 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 23 23 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 24 24 H 1.08008 * 119.98276 * 359.97438 * 12 11 10 25 25 H 1.08000 * 120.01949 * 179.69996 * 15 13 12 26 26 H 1.08005 * 119.98120 * 359.97438 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.1517 -5.5678 1.1986 13 6 0.4550 -6.7645 1.2004 14 9 0.1181 -7.3485 2.3711 15 6 0.1088 -7.3649 0.0022 16 6 0.4543 -6.7652 -1.1965 17 9 0.1174 -7.3503 -2.3666 18 6 1.1459 -5.5656 -1.1958 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 2.8718 -3.6044 -0.8895 23 1 2.8718 -3.6044 0.8904 24 1 1.4266 -5.1017 2.1334 25 1 -0.4303 -8.3007 0.0027 26 1 1.4156 -5.0973 -2.1310 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084931549.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:38 Heat of formation + Delta-G solvation = -103.091333 kcal Electronic energy + Delta-G solvation = -13086.110606 eV Core-core repulsion = 10378.280849 eV Total energy + Delta-G solvation = -2707.829757 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.03304 -50.01192 -40.06764 -35.90299 -33.93846 -31.30315 -30.76630 -27.13694 -24.03512 -23.84516 -21.99490 -18.87151 -18.27987 -18.17768 -17.37110 -16.99470 -16.69945 -16.50036 -16.32797 -15.37192 -14.79472 -14.79216 -14.23071 -13.69768 -13.50189 -13.00968 -12.92882 -12.80487 -12.45942 -12.26684 -11.76578 -11.57726 -11.21275 -10.54651 -9.81863 -9.76408 -8.18850 -6.30255 -0.03574 0.01206 1.43282 1.43806 1.54941 2.34801 2.44208 2.81720 3.15289 3.35766 3.60410 3.82618 4.00141 4.21334 4.50980 4.72247 4.77151 4.82771 4.99108 5.01841 5.15728 5.33974 5.51463 5.75481 5.78629 5.84920 6.22453 6.86988 7.39560 8.92802 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.042939 B = 0.006598 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.929603 B = 4242.826774 C = 4578.622681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.032 3.968 10 C -0.069 4.069 11 C -0.016 4.016 12 C -0.167 4.167 13 C 0.125 3.875 14 F -0.134 7.134 15 C -0.197 4.197 16 C 0.125 3.875 17 F -0.134 7.134 18 C -0.167 4.167 19 H 0.263 0.737 20 H -0.006 1.006 21 H -0.007 1.007 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.147 0.853 25 H 0.168 0.832 26 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.533 -12.731 0.007 12.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.005 4.005 10 C -0.106 4.106 11 C -0.017 4.017 12 C -0.186 4.186 13 C 0.106 3.894 14 F -0.112 7.112 15 C -0.216 4.216 16 C 0.106 3.894 17 F -0.113 7.113 18 C -0.186 4.186 19 H 0.072 0.928 20 H 0.012 0.988 21 H 0.012 0.988 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.165 0.835 25 H 0.186 0.814 26 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.366 -12.675 0.011 12.894 hybrid contribution -0.146 0.790 -0.012 0.804 sum 2.221 -11.885 -0.001 12.091 Atomic orbital electron populations 1.70103 1.07888 1.27765 1.51682 1.25963 0.95679 1.03357 0.94754 0.85456 0.78738 0.78480 0.78431 1.19886 1.21106 1.18481 1.21701 0.93803 0.91984 1.50492 0.91521 1.18960 0.94074 0.92197 0.95235 1.20675 0.97422 0.89326 1.03170 1.19853 0.94951 0.95232 0.91621 1.21276 1.01882 0.95299 1.00154 1.17257 0.98485 0.92640 0.81056 1.91506 1.90429 1.83627 1.45684 1.21074 1.06794 1.04104 0.89660 1.17252 0.98516 0.92599 0.81067 1.91507 1.90429 1.83584 1.45730 1.21274 1.01921 0.95255 1.00166 0.92828 0.98801 0.98819 0.90420 0.90441 0.83525 0.81413 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.11 13.29 21.45 0.28 -55.82 15 2 C 0.00 0.01 5.46 84.66 0.46 0.48 15 3 Si 0.96 43.18 29.54 68.60 2.03 45.20 15 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 15 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 15 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 15 7 C -0.54 -29.59 9.11 25.60 0.23 -29.36 15 8 H 0.07 3.43 7.74 -2.91 -0.02 3.41 15 9 C 0.03 1.63 4.95 29.85 0.15 1.78 15 10 C -0.07 -2.60 5.28 29.85 0.16 -2.44 15 11 C -0.02 -0.54 5.13 -19.88 -0.10 -0.64 15 12 C -0.17 -5.13 9.68 22.32 0.22 -4.91 15 13 C 0.13 3.50 7.30 22.37 0.16 3.66 15 14 F -0.13 -3.65 17.27 44.97 0.78 -2.87 15 15 C -0.20 -5.05 10.01 22.36 0.22 -4.82 15 16 C 0.13 3.50 7.30 22.37 0.16 3.66 15 17 F -0.13 -3.65 17.27 44.97 0.78 -2.88 15 18 C -0.17 -5.13 9.68 22.32 0.22 -4.92 15 19 H 0.26 14.88 8.31 -92.71 -0.77 14.11 15 20 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 15 21 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 15 22 H 0.08 2.76 8.09 -2.39 -0.02 2.74 15 23 H 0.08 2.76 8.08 -2.39 -0.02 2.74 15 24 H 0.15 4.24 8.06 -2.91 -0.02 4.22 15 25 H 0.17 3.36 8.06 -2.91 -0.02 3.34 15 26 H 0.15 4.25 8.06 -2.91 -0.02 4.22 15 Total: -1.00 -60.21 245.25 6.93 -53.29 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: 1.18 Total: 0.59 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 1.88 Total: -37.51 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.28 Total: -55.82 kcal Atomic # 9 Polarization: -7.30 SS G_CDS: 1.55 Total: -5.75 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -60.21 6.93 -53.29 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084931549.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.803 kcal (2) G-P(sol) polarization free energy of solvation -60.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds