Wall clock time and date at job start Sun Mar 29 2020 21:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.28801 * 2 1 4 4 C 1.54380 * 110.32273 * 122.23051 * 2 1 3 5 5 N 1.48564 * 104.59299 * 142.74763 * 4 2 1 6 6 C 1.46901 * 110.99922 * 200.95421 * 5 4 2 7 7 C 1.52992 * 109.47859 * 285.42363 * 6 5 4 8 8 C 1.52997 * 109.47482 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47432 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46890 * 120.00210 * 13 11 9 16 16 H 1.48501 * 109.47062 * 240.00257 * 13 11 9 17 17 C 1.48554 * 104.22210 * 320.51912 * 5 4 2 18 18 C 1.54254 * 110.32475 * 237.86813 * 2 1 3 19 19 H 1.08997 * 110.32854 * 122.20743 * 18 2 1 20 20 C 1.53001 * 110.40792 * 0.04261 * 18 2 1 21 21 H 1.09003 * 109.47615 * 182.13347 * 1 2 3 22 22 H 1.09007 * 109.47057 * 302.13121 * 1 2 3 23 23 H 1.08994 * 109.47460 * 62.12899 * 1 2 3 24 24 H 1.09004 * 110.41416 * 23.97066 * 4 2 1 25 25 H 1.09004 * 110.41074 * 261.52604 * 4 2 1 26 26 H 1.09002 * 109.46980 * 165.42021 * 6 5 4 27 27 H 1.09001 * 109.46628 * 45.42443 * 6 5 4 28 28 H 1.09002 * 109.47103 * 59.99734 * 7 6 5 29 29 H 1.08998 * 109.46862 * 300.00546 * 7 6 5 30 30 H 1.09002 * 109.47153 * 59.99783 * 8 7 6 31 31 H 1.09001 * 109.46832 * 299.99974 * 8 7 6 32 32 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 33 33 H 1.09004 * 110.40912 * 158.26197 * 17 5 4 34 34 H 1.08999 * 110.40841 * 280.58035 * 17 5 4 35 35 H 1.08993 * 109.47706 * 302.85463 * 20 18 2 36 36 H 1.08999 * 109.47262 * 62.86110 * 20 18 2 37 37 H 1.09005 * 109.46985 * 182.85500 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0662 -0.7721 1.2246 5 7 3.2693 -1.4835 0.7212 6 6 3.6068 -2.6230 1.5846 7 6 4.2358 -2.1114 2.8820 8 6 4.5867 -3.2982 3.7815 9 6 5.2068 -2.7941 5.0592 10 1 5.3372 -1.7334 5.2144 11 6 5.6068 -3.6872 6.0305 12 7 5.4475 -4.9790 5.8418 13 14 6.3747 -3.0624 7.6145 14 1 6.4411 -1.5792 7.5811 15 1 5.5476 -3.4945 8.7697 16 1 7.7455 -3.6166 7.7523 17 6 2.8806 -1.9416 -0.6374 18 6 2.0658 -0.7693 -1.2249 19 1 2.7081 -0.1252 -1.8254 20 6 0.9064 -1.2995 -2.0710 21 1 -0.3634 -1.0270 0.0383 22 1 -0.3633 0.5466 0.8703 23 1 -0.3634 0.4804 -0.9084 24 1 1.3228 -1.4862 1.5791 25 1 2.3394 -0.0796 2.0208 26 1 4.3145 -3.2724 1.0692 27 1 2.7014 -3.1839 1.8164 28 1 3.5281 -1.4620 3.3975 29 1 5.1411 -1.5504 2.6503 30 1 5.2942 -3.9479 3.2663 31 1 3.6810 -3.8587 4.0132 32 1 5.7292 -5.6073 6.5250 33 1 3.7671 -2.1297 -1.2433 34 1 2.2666 -2.8399 -0.5745 35 1 0.2666 -1.9317 -1.4553 36 1 0.3258 -0.4618 -2.4573 37 1 1.3008 -1.8826 -2.9032 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085697596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:34 Heat of formation + Delta-G solvation = -23.302857 kcal Electronic energy + Delta-G solvation = -14131.374353 eV Core-core repulsion = 11907.476851 eV Total energy + Delta-G solvation = -2223.897502 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.37849 -35.08214 -33.13125 -31.06337 -30.70690 -27.31004 -25.73670 -24.91575 -22.58099 -20.96255 -19.98114 -18.77718 -16.42142 -16.22085 -14.91184 -14.60583 -14.39744 -14.13712 -13.90154 -13.28638 -12.57782 -12.41490 -12.16133 -12.12099 -11.78479 -11.64658 -11.25337 -11.09538 -10.77865 -10.64586 -10.54348 -10.47321 -10.43117 -10.22518 -9.57452 -9.27225 -8.99912 -8.30850 -8.15766 -5.95912 -3.97593 3.33920 3.41081 3.46037 4.26838 4.50607 4.61482 4.63642 4.93307 5.20122 5.33863 5.39981 5.43941 5.45156 5.52706 5.65671 5.68839 5.82419 5.83564 5.90035 5.91322 5.98436 6.12648 6.21816 6.27346 6.37491 6.40715 6.73312 6.84222 7.11783 7.27248 7.44747 7.73684 7.88786 8.05134 8.48985 9.09935 9.66238 11.15703 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.065209 B = 0.005200 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.283168 B = 5383.558625 C = 5577.182316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.076 0.924 4 C 0.038 3.962 5 N -0.512 5.512 6 C 0.046 3.954 7 C -0.101 4.101 8 C 0.021 3.979 9 C -0.516 4.516 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.034 3.966 18 C -0.093 4.093 19 H 0.076 0.924 20 C -0.145 4.145 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.043 0.957 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.030 0.970 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.015 0.985 31 H 0.013 0.987 32 H 0.259 0.741 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.153 7.698 -13.744 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.095 0.905 4 C -0.090 4.090 5 N -0.236 5.236 6 C -0.082 4.082 7 C -0.139 4.139 8 C -0.017 4.017 9 C -0.555 4.555 10 H 0.074 0.926 11 C -0.146 4.146 12 N -0.537 5.537 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.094 4.094 18 C -0.112 4.112 19 H 0.094 0.906 20 C -0.202 4.202 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.639 7.862 -13.660 17.973 hybrid contribution -0.219 -0.417 1.010 1.114 sum -8.857 7.445 -12.650 17.144 Atomic orbital electron populations 1.21945 0.95084 1.01777 1.01429 1.21929 0.95229 0.99649 0.94535 0.90538 1.23196 0.91358 0.97506 0.96971 1.65421 1.32330 1.23996 1.01814 1.22452 0.99226 0.91425 0.95106 1.21574 0.99278 1.00116 0.92963 1.19090 0.96457 0.92562 0.93587 1.21303 1.39563 0.93049 1.01556 0.92624 1.25031 0.96077 0.94877 0.98569 1.69980 1.48094 1.01127 1.34500 0.86545 0.78960 0.79047 0.83519 1.19714 1.21072 1.21020 1.23173 0.98508 0.96085 0.91629 1.21902 0.96467 0.96740 0.96113 0.90583 1.21942 0.98037 1.00843 0.99402 0.92487 0.92850 0.92452 0.93888 0.90168 0.91371 0.95134 0.93637 0.92667 0.96639 0.96881 0.93136 0.90582 0.94087 0.92399 0.92445 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 7.94 37.16 0.29 -1.10 16 2 C -0.09 -1.08 3.65 -89.24 -0.33 -1.41 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.04 0.55 5.46 -2.18 -0.01 0.53 16 5 N -0.51 -8.26 5.34 -229.97 -1.23 -9.49 16 6 C 0.05 0.84 4.83 -3.83 -0.02 0.83 16 7 C -0.10 -2.22 5.27 -26.74 -0.14 -2.36 16 8 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 9 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 10 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 13 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 C 0.03 0.46 6.00 -2.19 -0.01 0.44 16 18 C -0.09 -1.03 3.65 -89.24 -0.33 -1.36 16 19 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 20 C -0.14 -1.32 7.93 37.16 0.29 -1.02 16 21 H 0.06 0.56 6.68 -51.93 -0.35 0.21 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.48 6.88 -51.93 -0.36 0.12 16 24 H 0.04 0.63 7.44 -51.93 -0.39 0.25 16 25 H 0.08 1.21 7.85 -51.93 -0.41 0.80 16 26 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 27 H 0.03 0.57 7.77 -51.93 -0.40 0.16 16 28 H 0.04 0.98 7.47 -51.93 -0.39 0.60 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.54 7.72 -51.93 -0.40 0.14 16 35 H 0.06 0.54 6.63 -51.93 -0.34 0.20 16 36 H 0.06 0.46 6.98 -51.93 -0.36 0.10 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 288.43 15.07 4.35 4.35 Total: -1.00 -30.44 288.43 -8.70 -39.14 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -6.74 Total: -5.35 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -0.80 Total: -18.91 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.49 Total: -36.30 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.44 -8.70 -39.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085697596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.835 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds