Wall clock time and date at job start Sun Mar 29 2020 21:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.28801 * 2 1 4 4 C 1.54380 * 110.32273 * 122.23051 * 2 1 3 5 5 N 1.48564 * 104.59299 * 142.74763 * 4 2 1 6 6 C 1.46901 * 110.99922 * 200.95421 * 5 4 2 7 7 C 1.52992 * 109.47859 * 285.42363 * 6 5 4 8 8 C 1.52997 * 109.47482 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47432 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46890 * 120.00210 * 13 11 9 16 16 H 1.48501 * 109.47062 * 240.00257 * 13 11 9 17 17 C 1.48554 * 104.22210 * 320.51912 * 5 4 2 18 18 C 1.54254 * 110.32475 * 237.86813 * 2 1 3 19 19 H 1.08997 * 110.32854 * 122.20743 * 18 2 1 20 20 C 1.53001 * 110.40792 * 0.04261 * 18 2 1 21 21 H 1.09003 * 109.47615 * 182.13347 * 1 2 3 22 22 H 1.09007 * 109.47057 * 302.13121 * 1 2 3 23 23 H 1.08994 * 109.47460 * 62.12899 * 1 2 3 24 24 H 1.09004 * 110.41416 * 23.97066 * 4 2 1 25 25 H 1.09004 * 110.41074 * 261.52604 * 4 2 1 26 26 H 1.09002 * 109.46980 * 165.42021 * 6 5 4 27 27 H 1.09001 * 109.46628 * 45.42443 * 6 5 4 28 28 H 1.09002 * 109.47103 * 59.99734 * 7 6 5 29 29 H 1.08998 * 109.46862 * 300.00546 * 7 6 5 30 30 H 1.09002 * 109.47153 * 59.99783 * 8 7 6 31 31 H 1.09001 * 109.46832 * 299.99974 * 8 7 6 32 32 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 33 33 H 1.09004 * 110.40912 * 158.26197 * 17 5 4 34 34 H 1.08999 * 110.40841 * 280.58035 * 17 5 4 35 35 H 1.08993 * 109.47706 * 302.85463 * 20 18 2 36 36 H 1.08999 * 109.47262 * 62.86110 * 20 18 2 37 37 H 1.09005 * 109.46985 * 182.85500 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0662 -0.7721 1.2246 5 7 3.2693 -1.4835 0.7212 6 6 3.6068 -2.6230 1.5846 7 6 4.2358 -2.1114 2.8820 8 6 4.5867 -3.2982 3.7815 9 6 5.2068 -2.7941 5.0592 10 1 5.3372 -1.7334 5.2144 11 6 5.6068 -3.6872 6.0305 12 7 5.4475 -4.9790 5.8418 13 14 6.3747 -3.0624 7.6145 14 1 6.4411 -1.5792 7.5811 15 1 5.5476 -3.4945 8.7697 16 1 7.7455 -3.6166 7.7523 17 6 2.8806 -1.9416 -0.6374 18 6 2.0658 -0.7693 -1.2249 19 1 2.7081 -0.1252 -1.8254 20 6 0.9064 -1.2995 -2.0710 21 1 -0.3634 -1.0270 0.0383 22 1 -0.3633 0.5466 0.8703 23 1 -0.3634 0.4804 -0.9084 24 1 1.3228 -1.4862 1.5791 25 1 2.3394 -0.0796 2.0208 26 1 4.3145 -3.2724 1.0692 27 1 2.7014 -3.1839 1.8164 28 1 3.5281 -1.4620 3.3975 29 1 5.1411 -1.5504 2.6503 30 1 5.2942 -3.9479 3.2663 31 1 3.6810 -3.8587 4.0132 32 1 5.7292 -5.6073 6.5250 33 1 3.7671 -2.1297 -1.2433 34 1 2.2666 -2.8399 -0.5745 35 1 0.2666 -1.9317 -1.4553 36 1 0.3258 -0.4618 -2.4573 37 1 1.3008 -1.8826 -2.9032 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085697596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:34 Heat of formation + Delta-G solvation = -41.896591 kcal Electronic energy + Delta-G solvation = -14132.180638 eV Core-core repulsion = 11907.476851 eV Total energy + Delta-G solvation = -2224.703787 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.46527 -36.63980 -34.99011 -32.83846 -31.64334 -28.94422 -26.76883 -26.36859 -24.15475 -22.36480 -21.64677 -19.74671 -18.49238 -17.39145 -16.56826 -16.20435 -15.91561 -15.26107 -14.81820 -14.63788 -14.39347 -13.81688 -13.46668 -13.27422 -13.04621 -12.95530 -12.66538 -12.55529 -12.45427 -12.19548 -12.12885 -11.56969 -11.53864 -11.38339 -11.31115 -11.17447 -11.04967 -10.57253 -9.44694 -8.21562 -6.32859 1.39237 1.39764 1.53631 2.40251 3.06107 3.11457 3.64051 3.68251 4.00054 4.16147 4.27269 4.32708 4.50730 4.57707 4.64163 4.66202 4.69847 4.74894 4.82972 4.89482 4.92075 5.01180 5.06089 5.14126 5.21052 5.28941 5.30270 5.41691 5.50074 5.55459 5.70802 5.83475 5.97822 6.05620 6.26058 6.83589 7.36500 8.90784 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.065209 B = 0.005200 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.283168 B = 5383.558625 C = 5577.182316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.081 0.919 4 C 0.033 3.967 5 N -0.524 5.524 6 C 0.058 3.942 7 C -0.085 4.085 8 C 0.025 3.975 9 C -0.543 4.543 10 H 0.058 0.942 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.967 3.033 14 H -0.263 1.263 15 H -0.276 1.276 16 H -0.276 1.276 17 C 0.031 3.969 18 C -0.088 4.088 19 H 0.083 0.917 20 C -0.140 4.140 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.076 0.924 24 H 0.037 0.963 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.026 0.974 28 H 0.045 0.955 29 H 0.050 0.950 30 H -0.008 1.008 31 H -0.010 1.010 32 H 0.264 0.736 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.624 9.026 -14.282 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.099 0.901 4 C -0.095 4.095 5 N -0.248 5.248 6 C -0.071 4.071 7 C -0.123 4.123 8 C -0.012 4.012 9 C -0.581 4.581 10 H 0.076 0.924 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.791 3.209 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.097 4.097 18 C -0.107 4.107 19 H 0.102 0.898 20 C -0.198 4.198 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.095 0.905 24 H 0.055 0.945 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.011 0.989 31 H 0.008 0.992 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.119 9.201 -14.217 19.233 hybrid contribution -0.071 -0.853 1.155 1.437 sum -9.190 8.348 -13.062 18.021 Atomic orbital electron populations 1.21918 0.93444 1.01915 1.02519 1.21925 0.96550 0.99324 0.93078 0.90095 1.23268 0.90663 0.97334 0.98257 1.65352 1.33745 1.22921 1.02752 1.22168 0.98720 0.92155 0.94024 1.21312 0.99254 0.97934 0.93836 1.18984 0.94609 0.93698 0.93938 1.21706 1.40236 0.93385 1.02794 0.92389 1.26001 0.96357 0.94983 1.02493 1.70105 1.48832 1.02512 1.35990 0.85366 0.78083 0.78868 0.78534 1.18669 1.20180 1.20167 1.23286 0.99175 0.97192 0.90043 1.21909 0.96986 0.95717 0.96107 0.89849 1.21910 0.97255 1.01448 0.99151 0.92753 0.92713 0.90510 0.94501 0.91265 0.91587 0.95564 0.93613 0.93134 0.98946 0.99184 0.92706 0.90211 0.94122 0.92763 0.90790 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.94 71.98 0.57 -1.80 16 2 C -0.09 -1.89 3.65 -9.90 -0.04 -1.93 16 3 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 4 C 0.03 0.93 5.46 86.45 0.47 1.40 16 5 N -0.52 -16.69 5.34 -881.50 -4.70 -21.39 16 6 C 0.06 2.17 4.83 86.30 0.42 2.58 16 7 C -0.09 -3.82 5.27 30.59 0.16 -3.66 16 8 C 0.03 1.40 4.97 29.85 0.15 1.55 16 9 C -0.54 -32.23 9.11 25.60 0.23 -31.99 16 10 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 11 C 0.00 -0.05 5.46 84.66 0.46 0.42 16 12 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 13 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 14 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 17 C 0.03 0.78 6.00 86.45 0.52 1.30 16 18 C -0.09 -1.75 3.65 -9.90 -0.04 -1.79 16 19 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 20 C -0.14 -2.15 7.93 71.98 0.57 -1.58 16 21 H 0.05 0.95 6.68 -2.39 -0.02 0.94 16 22 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 23 H 0.08 1.01 6.88 -2.39 -0.02 1.00 16 24 H 0.04 1.08 7.44 -2.38 -0.02 1.06 16 25 H 0.07 2.08 7.85 -2.39 -0.02 2.06 16 26 H 0.07 2.48 8.08 -2.39 -0.02 2.46 16 27 H 0.03 1.00 7.77 -2.39 -0.02 0.98 16 28 H 0.05 2.01 7.47 -2.39 -0.02 1.99 16 29 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 30 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 32 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.04 1.04 7.72 -2.39 -0.02 1.02 16 35 H 0.05 0.88 6.63 -2.39 -0.02 0.87 16 36 H 0.07 0.91 6.98 -2.39 -0.02 0.90 16 37 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -65.12 288.43 2.09 -63.03 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: 1.00 Total: 4.39 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 3.48 Total: -35.50 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -4.42 Total: -79.26 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -65.12 2.09 -63.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085697596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.134 kcal (2) G-P(sol) polarization free energy of solvation -65.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds