Wall clock time and date at job start Sun Mar 29 2020 21:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.26861 * 2 1 4 4 C 1.53985 * 110.30898 * 122.19159 * 2 1 3 5 5 N 1.47902 * 107.06097 * 117.69406 * 4 2 1 6 6 C 1.46894 * 111.00312 * 145.84230 * 5 4 2 7 7 C 1.52998 * 109.46988 * 52.60558 * 6 5 4 8 8 C 1.53006 * 109.46950 * 179.97438 * 7 6 5 9 9 C 1.50707 * 109.46922 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00229 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99909 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99874 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99790 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.46932 * 90.00463 * 13 11 9 15 15 H 1.48497 * 109.46967 * 209.99822 * 13 11 9 16 16 H 1.48495 * 109.47561 * 330.00506 * 13 11 9 17 17 C 1.48533 * 105.81656 * 25.32716 * 5 4 2 18 18 C 1.54595 * 110.31080 * 237.90880 * 2 1 3 19 19 H 1.09000 * 110.72508 * 337.66530 * 18 2 1 20 20 C 1.53004 * 110.72238 * 100.76379 * 18 2 1 21 21 H 1.09001 * 109.47002 * 182.08881 * 1 2 3 22 22 H 1.08993 * 109.46955 * 302.09318 * 1 2 3 23 23 H 1.09000 * 109.47050 * 62.09147 * 1 2 3 24 24 H 1.08996 * 109.91993 * 237.04736 * 4 2 1 25 25 H 1.09005 * 109.92070 * 358.34220 * 4 2 1 26 26 H 1.08997 * 109.47221 * 172.60381 * 6 5 4 27 27 H 1.08998 * 109.47577 * 292.60364 * 6 5 4 28 28 H 1.09001 * 109.47459 * 299.99770 * 7 6 5 29 29 H 1.08999 * 109.47513 * 60.00395 * 7 6 5 30 30 H 1.08997 * 109.47449 * 299.99939 * 8 7 6 31 31 H 1.08999 * 109.46816 * 60.00448 * 8 7 6 32 32 H 0.96999 * 119.99763 * 179.97438 * 12 11 9 33 33 H 1.09001 * 110.66803 * 202.35970 * 17 5 4 34 34 H 1.09000 * 110.80870 * 79.30055 * 17 5 4 35 35 H 1.09004 * 109.47070 * 60.00428 * 20 18 2 36 36 H 1.08997 * 109.46886 * 179.97438 * 20 18 2 37 37 H 1.09003 * 109.47455 * 300.00233 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0645 -0.7694 1.2221 5 7 2.8314 -1.9242 0.7065 6 6 3.9752 -2.2275 1.5769 7 6 3.4913 -2.3799 3.0203 8 6 4.6826 -2.6965 3.9267 9 6 4.2061 -2.8461 5.3486 10 1 3.1584 -2.7276 5.5823 11 6 5.1078 -3.1341 6.3512 12 7 4.6919 -3.2651 7.5919 13 14 6.9199 -3.3397 5.9468 14 1 7.6025 -2.0250 6.0511 15 1 7.5353 -4.2942 6.9036 16 1 7.0624 -3.8632 4.5645 17 6 3.2856 -1.5341 -0.6528 18 6 2.0667 -0.7702 -1.2283 19 1 1.3162 -1.4646 -1.6063 20 6 2.5053 0.2004 -2.3268 21 1 -0.3633 -1.0270 0.0375 22 1 -0.3633 0.5460 0.8706 23 1 -0.3633 0.4810 -0.9081 24 1 2.7162 -0.1241 1.8112 25 1 1.2327 -1.1193 1.8336 26 1 4.4437 -3.1560 1.2508 27 1 4.7001 -1.4155 1.5205 28 1 3.0228 -1.4514 3.3465 29 1 2.7665 -3.1921 3.0767 30 1 5.1508 -3.6252 3.6005 31 1 5.4078 -1.8847 3.8705 32 1 5.3262 -3.4682 8.2971 33 1 3.5047 -2.4170 -1.2533 34 1 4.1572 -0.8820 -0.5976 35 1 3.2945 0.8483 -1.9452 36 1 2.8798 -0.3632 -3.1812 37 1 1.6545 0.8075 -2.6361 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085697599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:36 Heat of formation + Delta-G solvation = -23.666278 kcal Electronic energy + Delta-G solvation = -14175.099223 eV Core-core repulsion = 11951.185962 eV Total energy + Delta-G solvation = -2223.913261 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.34132 -35.09085 -32.99723 -31.35321 -31.08068 -27.38826 -26.29187 -24.56501 -22.20946 -20.78776 -20.44442 -19.09544 -16.65599 -15.95786 -15.38730 -14.54368 -14.13973 -13.85221 -13.66003 -13.24264 -13.00965 -12.73229 -12.57093 -12.23663 -11.91351 -11.63330 -11.52216 -11.14878 -10.84759 -10.68926 -10.64988 -10.55223 -10.40401 -9.93056 -9.65631 -9.52384 -9.13357 -8.50717 -8.14447 -6.01178 -3.98704 3.32430 3.39721 3.44078 4.22571 4.48011 4.55838 4.63551 4.82565 5.23242 5.32742 5.33810 5.39143 5.41444 5.57939 5.60002 5.67907 5.69088 5.81431 5.82663 5.92606 6.00068 6.10423 6.14402 6.18972 6.22876 6.37493 6.55989 6.65421 6.91546 7.17459 7.31132 7.39313 7.49539 7.83591 8.58369 9.04372 9.61634 11.12487 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054747 B = 0.005804 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.318718 B = 4822.697021 C = 5176.622627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.071 0.929 4 C 0.040 3.960 5 N -0.517 5.517 6 C 0.044 3.956 7 C -0.101 4.101 8 C -0.013 4.013 9 C -0.518 4.518 10 H 0.071 0.929 11 C 0.065 3.935 12 N -0.905 5.905 13 Si 0.880 3.120 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.266 1.266 17 C 0.037 3.963 18 C -0.093 4.093 19 H 0.082 0.918 20 C -0.142 4.142 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.016 0.984 31 H 0.008 0.992 32 H 0.262 0.738 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.356 6.506 -18.376 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.121 4.121 3 H 0.090 0.910 4 C -0.088 4.088 5 N -0.241 5.241 6 C -0.083 4.083 7 C -0.139 4.139 8 C -0.051 4.051 9 C -0.556 4.556 10 H 0.089 0.911 11 C -0.136 4.136 12 N -0.544 5.544 13 Si 0.708 3.292 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.190 1.190 17 C -0.091 4.091 18 C -0.112 4.112 19 H 0.100 0.900 20 C -0.200 4.200 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.607 5.985 -18.192 19.697 hybrid contribution 1.587 0.601 0.086 1.699 sum -3.019 6.586 -18.106 19.502 Atomic orbital electron populations 1.21809 0.94554 1.02119 1.01245 1.22101 0.96316 0.98911 0.94729 0.91033 1.22950 0.98313 0.91338 0.96211 1.64824 1.21774 1.35602 1.01893 1.22481 0.91199 1.00074 0.94578 1.21537 0.99866 1.01390 0.91129 1.19554 0.93974 0.95950 0.95630 1.21152 0.96401 1.47916 0.90123 0.91056 1.25037 0.98831 0.94780 0.94913 1.69919 1.34873 1.49548 1.00098 0.86769 0.85691 0.78194 0.78575 1.20390 1.21388 1.19025 1.23296 0.96009 0.98607 0.91225 1.22150 0.97442 0.96851 0.94718 0.89981 1.21775 1.01074 0.98940 0.98187 0.92170 0.92650 0.93020 0.93510 0.90123 0.91086 0.95327 0.92810 0.92003 0.96599 0.97356 0.92794 0.90502 0.94002 0.92793 0.92639 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.88 37.16 0.33 -1.07 16 2 C -0.10 -1.15 3.17 -89.26 -0.28 -1.44 16 3 H 0.07 0.78 7.85 -51.93 -0.41 0.37 16 4 C 0.04 0.57 4.98 -2.76 -0.01 0.56 16 5 N -0.52 -7.98 5.40 -230.47 -1.24 -9.23 16 6 C 0.04 0.77 4.99 -3.83 -0.02 0.75 16 7 C -0.10 -2.10 4.90 -26.73 -0.13 -2.24 16 8 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 9 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 10 H 0.07 2.24 7.99 -52.49 -0.42 1.83 16 11 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 12 N -0.91 -28.47 13.96 55.43 0.77 -27.69 16 13 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 17 C 0.04 0.46 6.00 -1.90 -0.01 0.45 16 18 C -0.09 -0.99 3.20 -88.76 -0.28 -1.28 16 19 H 0.08 0.88 7.86 -51.93 -0.41 0.48 16 20 C -0.14 -1.24 9.16 37.16 0.34 -0.90 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.71 7.14 -51.93 -0.37 0.34 16 25 H 0.08 1.20 7.68 -51.93 -0.40 0.80 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.03 0.49 7.90 -51.93 -0.41 0.08 16 28 H 0.05 1.11 6.63 -51.93 -0.34 0.77 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 31 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.53 7.73 -51.93 -0.40 0.13 16 35 H 0.05 0.48 8.10 -51.93 -0.42 0.06 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 289.12 15.07 4.36 4.36 Total: -1.00 -30.70 289.12 -8.29 -38.99 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -6.90 Total: -4.67 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -0.61 Total: -19.27 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.47 Total: -36.92 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.70 -8.29 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085697599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.324 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds