Wall clock time and date at job start Sun Mar 29 2020 21:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.26861 * 2 1 4 4 C 1.53985 * 110.30898 * 122.19159 * 2 1 3 5 5 N 1.47902 * 107.06097 * 117.69406 * 4 2 1 6 6 C 1.46894 * 111.00312 * 145.84230 * 5 4 2 7 7 C 1.52998 * 109.46988 * 52.60558 * 6 5 4 8 8 C 1.53006 * 109.46950 * 179.97438 * 7 6 5 9 9 C 1.50707 * 109.46922 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00229 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99909 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99874 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99790 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.46932 * 90.00463 * 13 11 9 15 15 H 1.48497 * 109.46967 * 209.99822 * 13 11 9 16 16 H 1.48495 * 109.47561 * 330.00506 * 13 11 9 17 17 C 1.48533 * 105.81656 * 25.32716 * 5 4 2 18 18 C 1.54595 * 110.31080 * 237.90880 * 2 1 3 19 19 H 1.09000 * 110.72508 * 337.66530 * 18 2 1 20 20 C 1.53004 * 110.72238 * 100.76379 * 18 2 1 21 21 H 1.09001 * 109.47002 * 182.08881 * 1 2 3 22 22 H 1.08993 * 109.46955 * 302.09318 * 1 2 3 23 23 H 1.09000 * 109.47050 * 62.09147 * 1 2 3 24 24 H 1.08996 * 109.91993 * 237.04736 * 4 2 1 25 25 H 1.09005 * 109.92070 * 358.34220 * 4 2 1 26 26 H 1.08997 * 109.47221 * 172.60381 * 6 5 4 27 27 H 1.08998 * 109.47577 * 292.60364 * 6 5 4 28 28 H 1.09001 * 109.47459 * 299.99770 * 7 6 5 29 29 H 1.08999 * 109.47513 * 60.00395 * 7 6 5 30 30 H 1.08997 * 109.47449 * 299.99939 * 8 7 6 31 31 H 1.08999 * 109.46816 * 60.00448 * 8 7 6 32 32 H 0.96999 * 119.99763 * 179.97438 * 12 11 9 33 33 H 1.09001 * 110.66803 * 202.35970 * 17 5 4 34 34 H 1.09000 * 110.80870 * 79.30055 * 17 5 4 35 35 H 1.09004 * 109.47070 * 60.00428 * 20 18 2 36 36 H 1.08997 * 109.46886 * 179.97438 * 20 18 2 37 37 H 1.09003 * 109.47455 * 300.00233 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0645 -0.7694 1.2221 5 7 2.8314 -1.9242 0.7065 6 6 3.9752 -2.2275 1.5769 7 6 3.4913 -2.3799 3.0203 8 6 4.6826 -2.6965 3.9267 9 6 4.2061 -2.8461 5.3486 10 1 3.1584 -2.7276 5.5823 11 6 5.1078 -3.1341 6.3512 12 7 4.6919 -3.2651 7.5919 13 14 6.9199 -3.3397 5.9468 14 1 7.6025 -2.0250 6.0511 15 1 7.5353 -4.2942 6.9036 16 1 7.0624 -3.8632 4.5645 17 6 3.2856 -1.5341 -0.6528 18 6 2.0667 -0.7702 -1.2283 19 1 1.3162 -1.4646 -1.6063 20 6 2.5053 0.2004 -2.3268 21 1 -0.3633 -1.0270 0.0375 22 1 -0.3633 0.5460 0.8706 23 1 -0.3633 0.4810 -0.9081 24 1 2.7162 -0.1241 1.8112 25 1 1.2327 -1.1193 1.8336 26 1 4.4437 -3.1560 1.2508 27 1 4.7001 -1.4155 1.5205 28 1 3.0228 -1.4514 3.3465 29 1 2.7665 -3.1921 3.0767 30 1 5.1508 -3.6252 3.6005 31 1 5.4078 -1.8847 3.8705 32 1 5.3262 -3.4682 8.2971 33 1 3.5047 -2.4170 -1.2533 34 1 4.1572 -0.8820 -0.5976 35 1 3.2945 0.8483 -1.9452 36 1 2.8798 -0.3632 -3.1812 37 1 1.6545 0.8075 -2.6361 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085697599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:36 Heat of formation + Delta-G solvation = -43.213892 kcal Electronic energy + Delta-G solvation = -14175.946871 eV Core-core repulsion = 11951.185962 eV Total energy + Delta-G solvation = -2224.760910 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.40919 -36.59749 -34.85506 -32.94904 -32.12851 -29.03116 -27.27027 -25.96193 -23.60458 -22.23863 -21.70197 -20.30600 -18.87256 -17.08407 -16.71160 -16.07986 -15.81698 -15.06871 -14.72651 -14.68194 -14.30915 -14.09100 -13.75047 -13.42156 -13.26738 -13.04829 -12.68849 -12.56258 -12.39367 -12.03161 -11.81834 -11.65202 -11.55437 -11.53480 -11.37163 -11.26626 -11.15107 -10.77920 -9.35034 -8.30945 -6.35612 1.34491 1.36990 1.49434 2.35332 3.04096 3.07308 3.64215 3.68469 3.91975 4.18941 4.21952 4.30585 4.49345 4.59435 4.62549 4.64186 4.64420 4.76831 4.83747 4.86294 4.89583 5.00931 5.03225 5.10791 5.17474 5.22321 5.28485 5.39721 5.46207 5.52254 5.56503 5.63911 6.01138 6.11063 6.28311 6.72168 7.29043 8.86222 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054747 B = 0.005804 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.318718 B = 4822.697021 C = 5176.622627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 H 0.080 0.920 4 C 0.036 3.964 5 N -0.530 5.530 6 C 0.056 3.944 7 C -0.091 4.091 8 C -0.009 4.009 9 C -0.535 4.535 10 H 0.028 0.972 11 C 0.003 3.997 12 N -0.953 5.953 13 Si 0.954 3.046 14 H -0.265 1.265 15 H -0.282 1.282 16 H -0.246 1.246 17 C 0.034 3.966 18 C -0.086 4.086 19 H 0.083 0.917 20 C -0.137 4.137 21 H 0.051 0.949 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.021 0.979 31 H 0.018 0.982 32 H 0.267 0.733 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.115 7.052 -20.867 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 H 0.098 0.902 4 C -0.092 4.092 5 N -0.254 5.254 6 C -0.072 4.072 7 C -0.129 4.129 8 C -0.047 4.047 9 C -0.573 4.573 10 H 0.046 0.954 11 C -0.194 4.194 12 N -0.593 5.593 13 Si 0.777 3.223 14 H -0.190 1.190 15 H -0.208 1.208 16 H -0.169 1.169 17 C -0.093 4.093 18 C -0.105 4.105 19 H 0.102 0.898 20 C -0.195 4.195 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.051 0.949 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.382 6.538 -20.707 21.977 hybrid contribution 1.087 0.432 0.915 1.485 sum -2.295 6.971 -19.792 21.109 Atomic orbital electron populations 1.21780 0.93535 1.01854 1.02230 1.22099 0.97147 0.98865 0.93530 0.90209 1.22972 0.97587 0.91168 0.97469 1.64783 1.21151 1.36521 1.02937 1.22250 0.91861 1.00645 0.92476 1.21349 0.98092 1.00351 0.93134 1.19490 0.95426 0.96410 0.93379 1.21492 0.94728 1.48029 0.93049 0.95382 1.26068 1.04646 0.94184 0.94490 1.70076 1.37036 1.50737 1.01479 0.85596 0.78515 0.78830 0.79335 1.19043 1.20756 1.16933 1.23410 0.96993 0.99354 0.89581 1.22139 0.96501 0.97001 0.94877 0.89836 1.21740 1.01535 0.98577 0.97610 0.92986 0.92714 0.91078 0.94869 0.91568 0.90535 0.94780 0.93575 0.93486 0.96017 0.96414 0.92430 0.89674 0.93699 0.92892 0.91613 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.88 71.98 0.64 -1.87 16 2 C -0.10 -2.05 3.17 -9.92 -0.03 -2.08 16 3 H 0.08 1.56 7.85 -2.39 -0.02 1.54 16 4 C 0.04 1.02 4.98 86.44 0.43 1.45 16 5 N -0.53 -15.79 5.40 -883.08 -4.77 -20.56 16 6 C 0.06 1.87 4.99 86.30 0.43 2.30 16 7 C -0.09 -3.82 4.90 30.60 0.15 -3.67 16 8 C -0.01 -0.45 4.04 29.85 0.12 -0.32 16 9 C -0.54 -32.18 9.66 25.60 0.25 -31.93 16 10 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 11 C 0.00 0.16 5.47 84.66 0.46 0.62 16 12 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 13 Si 0.95 45.18 27.47 68.60 1.88 47.06 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 15 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 16 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 17 C 0.03 0.79 6.00 86.65 0.52 1.31 16 18 C -0.09 -1.63 3.20 -9.59 -0.03 -1.66 16 19 H 0.08 1.58 7.86 -2.39 -0.02 1.56 16 20 C -0.14 -1.94 9.16 71.98 0.66 -1.28 16 21 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.03 1.01 7.14 -2.39 -0.02 0.99 16 25 H 0.07 2.02 7.68 -2.38 -0.02 2.00 16 26 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.03 1.11 7.90 -2.39 -0.02 1.09 16 28 H 0.05 1.96 6.63 -2.39 -0.02 1.95 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 31 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 32 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.04 1.02 7.73 -2.39 -0.02 1.00 16 35 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -66.66 289.12 1.95 -64.71 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 0.93 Total: 6.91 kcal Atomic # 6 Polarization: -40.74 SS G_CDS: 3.60 Total: -37.14 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -4.47 Total: -81.54 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.06 kcal Total: -66.66 1.95 -64.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085697599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.493 kcal (2) G-P(sol) polarization free energy of solvation -66.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds