Wall clock time and date at job start Sun Mar 29 2020 21:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46872 * 2 1 4 4 H 1.08997 * 109.46970 * 304.32076 * 3 2 1 5 5 C 1.50707 * 109.46767 * 184.32403 * 3 2 1 6 6 H 1.07997 * 119.99754 * 305.19983 * 5 3 2 7 7 C 1.37871 * 119.99777 * 125.19892 * 5 3 2 8 8 N 1.31522 * 119.99913 * 172.94141 * 7 5 3 9 9 Si 1.86804 * 120.00376 * 352.94133 * 7 5 3 10 10 H 1.48501 * 109.46985 * 84.90831 * 9 7 5 11 11 H 1.48497 * 109.47291 * 204.91292 * 9 7 5 12 12 H 1.48501 * 109.46929 * 324.90824 * 9 7 5 13 13 N 1.46895 * 109.47151 * 64.32153 * 3 2 1 14 14 C 1.48559 * 111.00086 * 69.87781 * 13 3 2 15 15 C 1.54380 * 104.59799 * 159.03617 * 14 13 3 16 16 C 1.54261 * 105.05641 * 336.14617 * 15 14 13 17 17 C 1.53001 * 110.32207 * 118.89598 * 16 15 14 18 18 C 1.53002 * 110.32279 * 241.09756 * 16 15 14 19 19 C 1.48567 * 110.99850 * 185.29031 * 13 3 2 20 20 H 1.09000 * 109.47608 * 60.00153 * 1 2 3 21 21 H 1.09002 * 109.47392 * 180.02562 * 1 2 3 22 22 H 1.09010 * 109.47024 * 300.00022 * 1 2 3 23 23 H 1.08996 * 109.47072 * 239.99834 * 2 1 3 24 24 H 1.09000 * 109.47121 * 119.99638 * 2 1 3 25 25 H 0.96999 * 120.00091 * 180.02562 * 8 7 5 26 26 H 1.09001 * 110.40603 * 277.81509 * 14 13 3 27 27 H 1.09002 * 110.41462 * 40.25444 * 14 13 3 28 28 H 1.08997 * 110.32270 * 95.03888 * 15 14 13 29 29 H 1.09002 * 110.32424 * 217.24805 * 15 14 13 30 30 H 1.09005 * 109.47490 * 61.45325 * 17 16 15 31 31 H 1.09001 * 109.46999 * 181.45077 * 17 16 15 32 32 H 1.08998 * 109.47463 * 301.44835 * 17 16 15 33 33 H 1.09005 * 109.46761 * 58.54775 * 18 16 15 34 34 H 1.08990 * 109.47480 * 178.54459 * 18 16 15 35 35 H 1.08996 * 109.47358 * 298.55732 * 18 16 15 36 36 H 1.08999 * 110.41013 * 319.74283 * 19 13 3 37 37 H 1.08997 * 110.40695 * 82.17783 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6147 1.9782 -0.8487 5 6 3.5432 1.4439 -0.1071 6 1 4.1356 0.8862 0.6030 7 6 4.1620 2.1570 -1.1118 8 7 5.4720 2.2731 -1.1249 9 14 3.1399 2.9585 -2.4544 10 1 2.6702 4.2890 -1.9912 11 1 3.9687 3.1236 -3.6755 12 1 1.9684 2.1000 -2.7636 13 7 1.6373 2.1042 1.2482 14 6 2.3830 1.5517 2.4082 15 6 2.2823 2.6460 3.4925 16 6 2.0334 3.9564 2.7174 17 6 0.6916 4.5682 3.1250 18 6 3.1702 4.9484 2.9719 19 6 2.0048 3.5436 1.2302 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 5.9074 2.7751 -1.8315 26 1 1.9175 0.6291 2.7548 27 1 3.4252 1.3758 2.1414 28 1 1.4485 2.4387 4.1632 29 1 3.2143 2.7095 4.0541 30 1 0.7091 4.8069 4.1885 31 1 0.5181 5.4785 2.5511 32 1 -0.1084 3.8552 2.9258 33 1 4.1165 4.5030 2.6649 34 1 2.9938 5.8581 2.3982 35 1 3.2103 5.1904 4.0339 36 1 2.9877 3.6794 0.7790 37 1 1.2545 4.1207 0.6898 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087254240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:21 Heat of formation + Delta-G solvation = -15.614701 kcal Electronic energy + Delta-G solvation = -15311.188494 eV Core-core repulsion = 13087.624375 eV Total energy + Delta-G solvation = -2223.564119 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.80269 -35.15826 -32.14885 -31.32688 -28.88945 -27.00908 -26.77652 -24.39728 -22.62955 -21.35673 -18.81678 -18.22986 -16.88759 -15.16431 -14.71330 -14.16999 -13.72949 -13.21045 -13.02134 -12.81415 -12.56942 -12.34487 -12.19066 -11.94748 -11.55231 -11.14976 -10.96644 -10.90996 -10.77048 -10.45674 -10.16674 -10.04665 -9.90895 -9.83450 -9.55704 -9.51609 -9.08434 -8.61667 -7.10498 -6.15443 -4.16782 3.23856 3.32547 3.35061 4.35004 5.04050 5.18542 5.28603 5.36987 5.60510 5.93287 5.96192 5.98275 6.00768 6.10644 6.12309 6.19218 6.26205 6.30113 6.43804 6.46128 6.61182 6.63351 6.71753 6.75161 6.77045 6.93268 7.00535 7.05687 7.09716 7.22972 7.29696 7.64307 7.97986 8.32007 8.47728 8.89447 9.48979 10.96839 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.024356 B = 0.014309 C = 0.011356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.342104 B = 1956.389475 C = 2465.065547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C 0.157 3.843 4 H 0.044 0.956 5 C -0.536 4.536 6 H 0.077 0.923 7 C 0.079 3.921 8 N -0.894 5.894 9 Si 0.870 3.130 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.265 1.265 13 N -0.508 5.508 14 C 0.034 3.966 15 C -0.112 4.112 16 C -0.070 4.070 17 C -0.129 4.129 18 C -0.136 4.136 19 C 0.043 3.957 20 H 0.039 0.961 21 H 0.032 0.968 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.264 0.736 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.372 2.422 6.027 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C 0.050 3.950 4 H 0.062 0.938 5 C -0.575 4.575 6 H 0.095 0.905 7 C -0.124 4.124 8 N -0.532 5.532 9 Si 0.698 3.302 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.232 5.232 14 C -0.094 4.094 15 C -0.150 4.150 16 C -0.070 4.070 17 C -0.186 4.186 18 C -0.194 4.194 19 C -0.085 4.085 20 H 0.058 0.942 21 H 0.051 0.949 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.805 2.403 5.954 10.107 hybrid contribution 0.548 0.575 -1.000 1.277 sum -7.257 2.978 4.954 9.277 Atomic orbital electron populations 1.21752 0.97754 0.99135 1.01459 1.21511 0.93522 0.98395 1.00554 1.19895 0.94385 0.91485 0.89226 0.93818 1.21479 0.90628 1.30938 1.14433 0.90542 1.25103 0.94683 0.95295 0.97366 1.69926 1.08527 1.41214 1.33504 0.86975 0.80646 0.80384 0.82200 1.19936 1.21597 1.19005 1.65864 1.51285 1.01679 1.04328 1.22951 0.99512 0.96062 0.90881 1.22402 1.00214 0.94817 0.97596 1.21252 0.94647 0.94844 0.96283 1.21801 0.97042 1.00072 0.99684 1.21866 0.98642 0.98676 1.00204 1.23022 1.00595 0.90939 0.93945 0.94167 0.94915 0.92190 0.92935 0.93243 0.92640 0.92460 0.91447 0.92455 0.92439 0.93692 0.93493 0.92234 0.92179 0.93251 0.93443 0.91785 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.79 37.16 0.36 -2.22 16 2 C -0.10 -2.13 5.39 -26.73 -0.14 -2.27 16 3 C 0.16 3.66 1.75 -68.86 -0.12 3.54 16 4 H 0.04 1.07 4.68 -51.93 -0.24 0.83 16 5 C -0.54 -14.40 6.64 -34.44 -0.23 -14.62 16 6 H 0.08 2.25 6.68 -52.49 -0.35 1.90 16 7 C 0.08 2.20 5.03 -17.82 -0.09 2.11 16 8 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 9 Si 0.87 21.39 27.04 -169.99 -4.60 16.80 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.36 6.68 56.52 0.38 -5.98 16 13 N -0.51 -10.74 4.78 -223.41 -1.07 -11.81 16 14 C 0.03 0.68 5.53 -2.18 -0.01 0.67 16 15 C -0.11 -1.91 6.30 -25.35 -0.16 -2.07 16 16 C -0.07 -1.19 1.03 -153.13 -0.16 -1.35 16 17 C -0.13 -1.89 8.23 37.16 0.31 -1.59 16 18 C -0.14 -2.18 8.24 37.16 0.31 -1.88 16 19 C 0.04 0.90 5.44 -2.18 -0.01 0.89 16 20 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 1.08 7.73 -51.92 -0.40 0.67 16 23 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.05 1.02 7.08 -51.93 -0.37 0.65 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.06 1.08 7.65 -51.93 -0.40 0.68 16 27 H 0.07 1.55 5.55 -51.93 -0.29 1.26 16 28 H 0.06 0.89 7.71 -51.93 -0.40 0.49 16 29 H 0.06 0.93 7.71 -51.93 -0.40 0.53 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 1.54 6.29 -51.93 -0.33 1.21 16 37 H 0.06 1.12 7.86 -51.93 -0.41 0.71 16 LS Contribution 280.55 15.07 4.23 4.23 Total: -1.00 -27.91 280.55 -7.16 -35.06 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.55 Total: 0.29 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 0.05 Total: -18.79 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.30 Total: -37.59 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.60 Total: 16.80 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.91 -7.16 -35.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087254240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.448 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds