Wall clock time and date at job start Sun Mar 29 2020 21:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46872 * 2 1 4 4 H 1.08997 * 109.46970 * 304.32076 * 3 2 1 5 5 C 1.50707 * 109.46767 * 184.32403 * 3 2 1 6 6 H 1.07997 * 119.99754 * 305.19983 * 5 3 2 7 7 C 1.37871 * 119.99777 * 125.19892 * 5 3 2 8 8 N 1.31522 * 119.99913 * 172.94141 * 7 5 3 9 9 Si 1.86804 * 120.00376 * 352.94133 * 7 5 3 10 10 H 1.48501 * 109.46985 * 84.90831 * 9 7 5 11 11 H 1.48497 * 109.47291 * 204.91292 * 9 7 5 12 12 H 1.48501 * 109.46929 * 324.90824 * 9 7 5 13 13 N 1.46895 * 109.47151 * 64.32153 * 3 2 1 14 14 C 1.48559 * 111.00086 * 69.87781 * 13 3 2 15 15 C 1.54380 * 104.59799 * 159.03617 * 14 13 3 16 16 C 1.54261 * 105.05641 * 336.14617 * 15 14 13 17 17 C 1.53001 * 110.32207 * 118.89598 * 16 15 14 18 18 C 1.53002 * 110.32279 * 241.09756 * 16 15 14 19 19 C 1.48567 * 110.99850 * 185.29031 * 13 3 2 20 20 H 1.09000 * 109.47608 * 60.00153 * 1 2 3 21 21 H 1.09002 * 109.47392 * 180.02562 * 1 2 3 22 22 H 1.09010 * 109.47024 * 300.00022 * 1 2 3 23 23 H 1.08996 * 109.47072 * 239.99834 * 2 1 3 24 24 H 1.09000 * 109.47121 * 119.99638 * 2 1 3 25 25 H 0.96999 * 120.00091 * 180.02562 * 8 7 5 26 26 H 1.09001 * 110.40603 * 277.81509 * 14 13 3 27 27 H 1.09002 * 110.41462 * 40.25444 * 14 13 3 28 28 H 1.08997 * 110.32270 * 95.03888 * 15 14 13 29 29 H 1.09002 * 110.32424 * 217.24805 * 15 14 13 30 30 H 1.09005 * 109.47490 * 61.45325 * 17 16 15 31 31 H 1.09001 * 109.46999 * 181.45077 * 17 16 15 32 32 H 1.08998 * 109.47463 * 301.44835 * 17 16 15 33 33 H 1.09005 * 109.46761 * 58.54775 * 18 16 15 34 34 H 1.08990 * 109.47480 * 178.54459 * 18 16 15 35 35 H 1.08996 * 109.47358 * 298.55732 * 18 16 15 36 36 H 1.08999 * 110.41013 * 319.74283 * 19 13 3 37 37 H 1.08997 * 110.40695 * 82.17783 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6147 1.9782 -0.8487 5 6 3.5432 1.4439 -0.1071 6 1 4.1356 0.8862 0.6030 7 6 4.1620 2.1570 -1.1118 8 7 5.4720 2.2731 -1.1249 9 14 3.1399 2.9585 -2.4544 10 1 2.6702 4.2890 -1.9912 11 1 3.9687 3.1236 -3.6755 12 1 1.9684 2.1000 -2.7636 13 7 1.6373 2.1042 1.2482 14 6 2.3830 1.5517 2.4082 15 6 2.2823 2.6460 3.4925 16 6 2.0334 3.9564 2.7174 17 6 0.6916 4.5682 3.1250 18 6 3.1702 4.9484 2.9719 19 6 2.0048 3.5436 1.2302 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 5.9074 2.7751 -1.8315 26 1 1.9175 0.6291 2.7548 27 1 3.4252 1.3758 2.1414 28 1 1.4485 2.4387 4.1632 29 1 3.2143 2.7095 4.0541 30 1 0.7091 4.8069 4.1885 31 1 0.5181 5.4785 2.5511 32 1 -0.1084 3.8552 2.9258 33 1 4.1165 4.5030 2.6649 34 1 2.9938 5.8581 2.3982 35 1 3.2103 5.1904 4.0339 36 1 2.9877 3.6794 0.7790 37 1 1.2545 4.1207 0.6898 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087254240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:21 Heat of formation + Delta-G solvation = -32.976159 kcal Electronic energy + Delta-G solvation = -15311.941344 eV Core-core repulsion = 13087.624375 eV Total energy + Delta-G solvation = -2224.316968 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.40213 -36.81157 -34.24370 -32.85503 -30.48377 -28.78337 -28.06725 -26.07195 -24.33985 -22.98432 -20.59848 -19.78207 -18.87456 -16.97284 -16.35479 -15.96137 -15.26316 -14.92258 -14.50260 -14.41919 -14.13731 -13.96267 -13.80832 -13.54809 -13.06896 -12.81266 -12.61490 -12.47411 -12.22893 -12.04311 -11.85045 -11.72725 -11.52189 -11.35168 -11.22032 -11.13866 -10.98750 -10.73164 -8.94398 -8.33429 -6.37218 1.26582 1.29129 1.38078 2.27705 2.99623 3.59206 3.77311 3.94269 4.17203 4.32737 4.51981 4.58458 4.58492 4.70125 4.71364 4.84000 4.85701 4.88965 4.97141 5.01170 5.13601 5.19365 5.22400 5.23879 5.35971 5.37491 5.39940 5.47941 5.49802 5.61479 5.64674 5.69865 6.12181 6.41324 6.49179 6.71707 7.31397 8.82477 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.024356 B = 0.014309 C = 0.011356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.342104 B = 1956.389475 C = 2465.065547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.101 4.101 3 C 0.158 3.842 4 H 0.037 0.963 5 C -0.527 4.527 6 H 0.037 0.963 7 C 0.027 3.973 8 N -0.942 5.942 9 Si 0.925 3.075 10 H -0.266 1.266 11 H -0.288 1.288 12 H -0.251 1.251 13 N -0.497 5.497 14 C 0.034 3.966 15 C -0.106 4.106 16 C -0.068 4.068 17 C -0.121 4.121 18 C -0.133 4.133 19 C 0.039 3.961 20 H 0.041 0.959 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.042 0.958 24 H 0.046 0.954 25 H 0.264 0.736 26 H 0.070 0.930 27 H 0.026 0.974 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.029 0.971 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.022 0.978 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.012 3.108 6.952 12.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.140 4.140 3 C 0.051 3.949 4 H 0.055 0.945 5 C -0.566 4.566 6 H 0.055 0.945 7 C -0.172 4.172 8 N -0.582 5.582 9 Si 0.750 3.250 10 H -0.191 1.191 11 H -0.215 1.215 12 H -0.175 1.175 13 N -0.221 5.221 14 C -0.094 4.094 15 C -0.144 4.144 16 C -0.069 4.069 17 C -0.178 4.178 18 C -0.190 4.190 19 C -0.090 4.090 20 H 0.060 0.940 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.045 0.955 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.041 0.959 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.466 3.082 6.891 12.904 hybrid contribution 1.425 0.308 -1.215 1.898 sum -9.041 3.390 5.676 11.200 Atomic orbital electron populations 1.21635 0.94752 1.00959 1.01649 1.21449 0.96117 0.96364 1.00044 1.19863 0.91706 0.93252 0.90111 0.94537 1.21654 0.92587 1.29371 1.12967 0.94513 1.25830 0.95512 0.96194 0.99689 1.70062 1.10378 1.43087 1.34680 0.86075 0.79542 0.79955 0.79394 1.19062 1.21453 1.17508 1.65834 1.50679 1.01949 1.03588 1.22934 0.96958 0.97938 0.91574 1.22400 1.01650 0.93436 0.96879 1.21291 0.96807 0.95296 0.93458 1.21731 0.94728 1.00025 1.01356 1.21831 0.96738 0.98383 1.02085 1.23075 0.98309 0.90839 0.96728 0.93975 0.92326 0.91928 0.93887 0.93472 0.92695 0.91179 0.95535 0.89771 0.91919 0.91207 0.92761 0.92479 0.95160 0.92610 0.90599 0.95937 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 9.79 71.98 0.71 -3.70 16 2 C -0.10 -4.16 5.39 30.60 0.16 -4.00 16 3 C 0.16 7.38 1.75 44.17 0.08 7.46 16 4 H 0.04 1.76 4.68 -2.39 -0.01 1.75 16 5 C -0.53 -29.37 6.64 25.60 0.17 -29.20 16 6 H 0.04 2.30 6.68 -2.91 -0.02 2.28 16 7 C 0.03 1.53 5.03 84.65 0.43 1.95 16 8 N -0.94 -58.34 13.96 21.45 0.30 -58.04 16 9 Si 0.93 44.54 27.04 68.60 1.85 46.40 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 12 H -0.25 -11.42 6.68 99.48 0.66 -10.75 16 13 N -0.50 -20.66 4.78 -860.72 -4.12 -24.78 16 14 C 0.03 1.36 5.53 86.45 0.48 1.84 16 15 C -0.11 -3.38 6.30 31.49 0.20 -3.18 16 16 C -0.07 -2.18 1.03 -51.29 -0.05 -2.24 16 17 C -0.12 -3.09 8.23 71.98 0.59 -2.50 16 18 C -0.13 -4.05 8.24 71.98 0.59 -3.46 16 19 C 0.04 1.60 5.44 86.45 0.47 2.07 16 20 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.06 2.05 7.73 -2.38 -0.02 2.03 16 23 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 24 H 0.05 1.92 7.08 -2.39 -0.02 1.91 16 25 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 26 H 0.07 2.56 7.65 -2.39 -0.02 2.54 16 27 H 0.03 1.27 5.55 -2.39 -0.01 1.26 16 28 H 0.08 2.27 7.71 -2.39 -0.02 2.26 16 29 H 0.06 1.94 7.71 -2.39 -0.02 1.92 16 30 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.03 1.08 8.12 -2.38 -0.02 1.06 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.02 1.11 6.29 -2.39 -0.02 1.09 16 37 H 0.06 2.38 7.86 -2.39 -0.02 2.36 16 Total: -1.00 -62.05 280.55 2.82 -59.22 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.96 Total: 12.15 kcal Atomic # 6 Polarization: -38.77 SS G_CDS: 3.82 Total: -34.95 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -3.82 Total: -82.83 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.85 Total: 46.40 kcal Total: -62.05 2.82 -59.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087254240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.246 kcal (2) G-P(sol) polarization free energy of solvation -62.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds