Wall clock time and date at job start Sun Mar 29 2020 21:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.52997 * 109.46975 * 239.99628 * 2 1 3 5 5 C 1.53006 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47127 * 59.99836 * 5 4 2 7 7 C 1.53000 * 109.47060 * 300.00449 * 6 5 4 8 8 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 9 9 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 10 10 N 1.46894 * 109.47806 * 64.99505 * 9 7 6 11 11 C 1.46895 * 111.00595 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47433 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99709 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00296 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99674 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00315 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47048 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47128 * 119.99822 * 16 14 12 19 19 H 1.48499 * 109.47223 * 240.00157 * 16 14 12 20 20 C 1.52996 * 109.47328 * 60.00126 * 7 6 5 21 21 H 1.08996 * 109.47261 * 300.00539 * 1 2 3 22 22 H 1.09004 * 109.47368 * 60.00155 * 1 2 3 23 23 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47375 * 300.00370 * 4 2 1 25 25 H 1.09000 * 109.47140 * 60.00388 * 4 2 1 26 26 H 1.08998 * 109.46505 * 299.99708 * 5 4 2 27 27 H 1.08996 * 109.46884 * 180.02562 * 5 4 2 28 28 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 30 30 H 1.08998 * 109.46991 * 184.99937 * 9 7 6 31 31 H 1.09008 * 109.46864 * 304.99696 * 9 7 6 32 32 H 1.00902 * 110.99854 * 56.04216 * 10 9 7 33 33 H 1.08999 * 109.47040 * 300.00362 * 11 10 9 34 34 H 1.09006 * 109.46888 * 60.00201 * 11 10 9 35 35 H 0.96996 * 120.00048 * 180.02562 * 15 14 12 36 36 H 1.08992 * 109.47554 * 59.99639 * 20 7 6 37 37 H 1.09004 * 109.47108 * 179.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7221 1.2496 8 1 3.9331 0.3055 1.2498 9 6 4.0795 -1.4433 2.4988 10 7 5.5434 -1.3397 2.5608 11 6 6.0697 -2.0219 3.7505 12 6 7.5709 -1.8941 3.7801 13 1 8.0829 -1.3591 2.9938 14 6 8.2909 -2.4600 4.8108 15 7 7.6675 -3.1118 5.7679 16 14 10.1519 -2.3021 4.8471 17 1 10.6061 -1.5278 3.6641 18 1 10.5648 -1.5977 6.0874 19 1 10.7641 -3.6548 4.8188 20 6 2.0395 -0.7216 1.2493 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6765 -1.7490 -1.2492 25 1 1.6766 -0.2075 -2.1392 26 1 3.9336 0.3056 -1.2488 27 1 3.9332 -1.2354 -2.1391 28 1 5.1695 -1.4434 0.0008 29 1 3.7158 -2.4709 0.0002 30 1 3.6448 -0.9837 3.3865 31 1 3.7911 -2.4936 2.4552 32 1 5.8391 -0.3753 2.5369 33 1 5.6489 -1.5660 4.6467 34 1 5.7951 -3.0762 3.7160 35 1 8.1739 -3.5096 6.4932 36 1 1.6757 -1.7490 1.2491 37 1 1.6761 -0.2081 2.1395 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088430482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:25 Heat of formation + Delta-G solvation = -44.333737 kcal Electronic energy + Delta-G solvation = -14112.676251 eV Core-core repulsion = 11887.866781 eV Total energy + Delta-G solvation = -2224.809470 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.87616 -35.32110 -32.90299 -31.96736 -30.74779 -26.88738 -26.20187 -23.97165 -21.80523 -21.38084 -20.10100 -19.56587 -16.34834 -15.18041 -14.82182 -14.47952 -14.38130 -14.18075 -13.74100 -13.30744 -12.81370 -12.39684 -12.30553 -11.81308 -11.64444 -11.50140 -11.28955 -11.09452 -10.82642 -10.71356 -10.65203 -10.56139 -10.16450 -10.06218 -9.78443 -9.63422 -9.08936 -8.45462 -7.20923 -6.00628 -4.02333 3.32595 3.39627 3.44978 4.45128 4.72561 4.77293 4.88522 5.23173 5.27669 5.35324 5.41357 5.54207 5.56341 5.63376 5.69552 5.77996 5.86026 5.88176 5.98732 6.08802 6.14053 6.16918 6.27450 6.37665 6.38773 6.47005 6.56859 6.79394 6.81780 7.30963 7.47185 7.82546 8.17095 8.45590 8.67392 9.07755 9.62607 11.10667 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.065237 B = 0.005298 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.102084 B = 5283.929885 C = 5568.140656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.105 4.105 7 C -0.082 4.082 8 H 0.063 0.937 9 C 0.063 3.937 10 N -0.688 5.688 11 C 0.193 3.807 12 C -0.512 4.512 13 H 0.063 0.937 14 C 0.054 3.946 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.108 4.108 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.015 0.985 31 H 0.061 0.939 32 H 0.326 0.674 33 H -0.016 1.016 34 H 0.027 0.973 35 H 0.260 0.740 36 H 0.060 0.940 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.958 5.557 -11.421 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.142 4.142 7 C -0.101 4.101 8 H 0.082 0.918 9 C -0.067 4.067 10 N -0.318 5.318 11 C 0.066 3.934 12 C -0.551 4.551 13 H 0.081 0.919 14 C -0.147 4.147 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.146 4.146 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.080 0.920 32 H 0.142 0.858 33 H 0.002 0.998 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.817 4.898 -11.664 17.312 hybrid contribution 0.697 0.577 0.945 1.309 sum -11.120 5.476 -10.719 16.387 Atomic orbital electron populations 1.21836 0.95733 1.01601 1.01241 1.21120 0.94882 0.99604 0.95367 0.91509 1.21594 0.96114 1.00359 0.96960 1.21577 0.95053 1.00731 0.98471 1.21461 1.01859 0.98381 0.92536 1.21148 0.93944 0.99477 0.95541 0.91847 1.21926 0.90468 0.99638 0.94653 1.60650 1.06662 1.19284 1.45212 1.19548 0.94793 0.94199 0.84852 1.21246 0.91624 1.34311 1.07884 0.91927 1.25000 0.98833 0.95332 0.95497 1.69977 1.35563 1.36225 1.12096 0.86433 0.85306 0.77781 0.77843 1.19648 1.21125 1.21005 1.21622 0.95685 1.00454 0.96874 0.92878 0.93073 0.92826 0.92221 0.92719 0.92394 0.92485 0.90380 0.92608 0.96694 0.92022 0.85760 0.99773 0.95531 0.93012 0.92093 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.19 37.16 0.34 -1.02 16 2 C -0.09 -0.98 2.72 -90.62 -0.25 -1.23 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -1.19 5.20 -26.73 -0.14 -1.33 16 5 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 6 C -0.10 -1.50 5.09 -26.73 -0.14 -1.64 16 7 C -0.08 -1.20 2.33 -90.62 -0.21 -1.41 16 8 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 9 C 0.06 1.16 5.08 -3.83 -0.02 1.14 16 10 N -0.69 -15.07 5.94 -115.06 -0.68 -15.76 16 11 C 0.19 5.20 5.44 -4.98 -0.03 5.17 16 12 C -0.51 -14.81 9.32 -34.44 -0.32 -15.13 16 13 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 16 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 20 C -0.11 -1.35 4.48 -26.73 -0.12 -1.47 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.28 7.75 -51.93 -0.40 0.87 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 32 H 0.33 6.86 8.72 -39.29 -0.34 6.52 16 33 H -0.02 -0.44 8.14 -51.93 -0.42 -0.87 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 293.19 15.07 4.42 4.42 Total: -1.00 -29.66 293.19 -8.74 -38.40 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.05 Total: -0.39 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -1.13 Total: -17.00 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.05 Total: -42.37 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.66 -8.74 -38.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088430482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.938 kcal (2) G-P(sol) polarization free energy of solvation -29.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds