Wall clock time and date at job start Sun Mar 29 2020 21:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.52997 * 109.46975 * 239.99628 * 2 1 3 5 5 C 1.53006 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47127 * 59.99836 * 5 4 2 7 7 C 1.53000 * 109.47060 * 300.00449 * 6 5 4 8 8 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 9 9 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 10 10 N 1.46894 * 109.47806 * 64.99505 * 9 7 6 11 11 C 1.46895 * 111.00595 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47433 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99709 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00296 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99674 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00315 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47048 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47128 * 119.99822 * 16 14 12 19 19 H 1.48499 * 109.47223 * 240.00157 * 16 14 12 20 20 C 1.52996 * 109.47328 * 60.00126 * 7 6 5 21 21 H 1.08996 * 109.47261 * 300.00539 * 1 2 3 22 22 H 1.09004 * 109.47368 * 60.00155 * 1 2 3 23 23 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47375 * 300.00370 * 4 2 1 25 25 H 1.09000 * 109.47140 * 60.00388 * 4 2 1 26 26 H 1.08998 * 109.46505 * 299.99708 * 5 4 2 27 27 H 1.08996 * 109.46884 * 180.02562 * 5 4 2 28 28 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 30 30 H 1.08998 * 109.46991 * 184.99937 * 9 7 6 31 31 H 1.09008 * 109.46864 * 304.99696 * 9 7 6 32 32 H 1.00902 * 110.99854 * 56.04216 * 10 9 7 33 33 H 1.08999 * 109.47040 * 300.00362 * 11 10 9 34 34 H 1.09006 * 109.46888 * 60.00201 * 11 10 9 35 35 H 0.96996 * 120.00048 * 180.02562 * 15 14 12 36 36 H 1.08992 * 109.47554 * 59.99639 * 20 7 6 37 37 H 1.09004 * 109.47108 * 179.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7221 1.2496 8 1 3.9331 0.3055 1.2498 9 6 4.0795 -1.4433 2.4988 10 7 5.5434 -1.3397 2.5608 11 6 6.0697 -2.0219 3.7505 12 6 7.5709 -1.8941 3.7801 13 1 8.0829 -1.3591 2.9938 14 6 8.2909 -2.4600 4.8108 15 7 7.6675 -3.1118 5.7679 16 14 10.1519 -2.3021 4.8471 17 1 10.6061 -1.5278 3.6641 18 1 10.5648 -1.5977 6.0874 19 1 10.7641 -3.6548 4.8188 20 6 2.0395 -0.7216 1.2493 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6765 -1.7490 -1.2492 25 1 1.6766 -0.2075 -2.1392 26 1 3.9336 0.3056 -1.2488 27 1 3.9332 -1.2354 -2.1391 28 1 5.1695 -1.4434 0.0008 29 1 3.7158 -2.4709 0.0002 30 1 3.6448 -0.9837 3.3865 31 1 3.7911 -2.4936 2.4552 32 1 5.8391 -0.3753 2.5369 33 1 5.6489 -1.5660 4.6467 34 1 5.7951 -3.0762 3.7160 35 1 8.1739 -3.5096 6.4932 36 1 1.6757 -1.7490 1.2491 37 1 1.6761 -0.2081 2.1395 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088430482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:24 Heat of formation + Delta-G solvation = -61.974840 kcal Electronic energy + Delta-G solvation = -14113.441226 eV Core-core repulsion = 11887.866781 eV Total energy + Delta-G solvation = -2225.574445 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.96228 -37.01314 -34.79129 -33.21129 -32.09671 -28.78492 -27.12911 -25.62942 -23.40578 -22.81062 -21.30845 -20.57731 -18.53841 -16.81301 -16.32354 -15.89829 -15.74530 -15.32176 -14.95180 -14.69587 -14.28561 -14.04744 -13.51864 -13.16531 -12.98900 -12.92352 -12.67986 -12.61593 -12.39736 -12.16981 -11.98607 -11.81412 -11.61081 -11.37642 -11.25792 -10.83045 -10.75254 -10.66665 -9.09956 -8.23815 -6.35464 1.40698 1.41627 1.55811 2.39558 3.09440 3.52084 3.77004 3.89100 4.02742 4.18580 4.36992 4.47238 4.51849 4.64685 4.67668 4.75197 4.82733 4.86125 4.93521 4.99781 5.06649 5.09568 5.15551 5.25141 5.26582 5.33777 5.44567 5.45548 5.52950 5.58782 5.63342 5.69693 6.01065 6.44429 6.72214 6.88667 7.35904 8.88336 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.065237 B = 0.005298 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.102084 B = 5283.929885 C = 5568.140656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.069 0.931 4 C -0.110 4.110 5 C -0.116 4.116 6 C -0.103 4.103 7 C -0.073 4.073 8 H 0.066 0.934 9 C 0.064 3.936 10 N -0.684 5.684 11 C 0.207 3.793 12 C -0.535 4.535 13 H 0.065 0.935 14 C 0.000 4.000 15 N -0.936 5.936 16 Si 0.976 3.024 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.278 1.278 20 C -0.105 4.105 21 H 0.054 0.946 22 H 0.064 0.936 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.012 0.988 31 H 0.051 0.949 32 H 0.333 0.667 33 H -0.042 1.042 34 H -0.003 1.003 35 H 0.265 0.735 36 H 0.058 0.942 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.982 6.533 -12.753 18.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.148 4.148 5 C -0.153 4.153 6 C -0.141 4.141 7 C -0.092 4.092 8 H 0.084 0.916 9 C -0.066 4.066 10 N -0.314 5.314 11 C 0.079 3.921 12 C -0.573 4.573 13 H 0.083 0.917 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.800 3.200 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.203 1.203 20 C -0.143 4.143 21 H 0.073 0.927 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.150 0.850 33 H -0.024 1.024 34 H 0.015 0.985 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.860 5.887 -13.015 18.566 hybrid contribution 0.657 0.254 1.372 1.542 sum -11.203 6.141 -11.643 17.285 Atomic orbital electron populations 1.21804 0.94332 1.01934 1.02053 1.21102 0.96021 0.99325 0.94236 0.91280 1.21587 0.94903 1.00630 0.97632 1.21533 0.96120 1.00538 0.97134 1.21410 1.00332 0.98465 0.93875 1.21071 0.95657 0.98872 0.93558 0.91555 1.22019 0.88198 0.99663 0.96704 1.60534 1.09056 1.19413 1.42384 1.19209 0.94530 0.92712 0.85643 1.21583 0.92582 1.34812 1.08347 0.91653 1.25998 1.04487 0.94541 0.94814 1.70105 1.37887 1.36853 1.12789 0.85236 0.78332 0.78073 0.78350 1.18560 1.20203 1.20328 1.21592 0.93617 1.00797 0.98266 0.92665 0.91728 0.92754 0.92269 0.90850 0.92020 0.91630 0.92796 0.93304 0.97004 0.93078 0.84982 1.02445 0.98511 0.92587 0.92307 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.19 71.98 0.66 -1.61 16 2 C -0.09 -1.68 2.72 -10.80 -0.03 -1.71 16 3 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.11 -2.04 5.20 30.60 0.16 -1.88 16 5 C -0.12 -2.51 5.92 30.60 0.18 -2.33 16 6 C -0.10 -2.90 5.09 30.59 0.16 -2.75 16 7 C -0.07 -2.09 2.33 -10.79 -0.03 -2.11 16 8 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 9 C 0.06 2.38 5.08 86.30 0.44 2.82 16 10 N -0.68 -30.67 5.94 -517.95 -3.08 -33.74 16 11 C 0.21 11.58 5.44 85.56 0.47 12.04 16 12 C -0.54 -31.39 9.32 25.60 0.24 -31.15 16 13 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 14 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 15 N -0.94 -57.80 13.29 21.45 0.28 -57.52 16 16 Si 0.98 44.97 29.54 68.60 2.03 46.99 16 17 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 C -0.10 -2.47 4.48 30.59 0.14 -2.33 16 21 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.77 7.75 -2.39 -0.02 1.75 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.33 14.17 8.72 -89.69 -0.78 13.39 16 33 H -0.04 -2.53 8.14 -2.39 -0.02 -2.55 16 34 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 35 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -63.71 293.19 2.29 -61.42 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.22 Total: 13.42 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 2.84 Total: -30.58 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -2.79 Total: -91.26 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -63.71 2.29 -61.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088430482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.554 kcal (2) G-P(sol) polarization free energy of solvation -63.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds