Wall clock time and date at job start Sun Mar 29 2020 21:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99312 * 2 1 3 5 5 C 1.53005 * 109.47159 * 60.00365 * 4 2 1 6 6 C 1.52997 * 109.47452 * 59.99536 * 5 4 2 7 7 C 1.53002 * 109.46817 * 300.00239 * 6 5 4 8 8 H 1.08992 * 109.47063 * 299.99823 * 7 6 5 9 9 C 1.53001 * 109.46637 * 179.97438 * 7 6 5 10 10 N 1.46896 * 109.47098 * 65.00379 * 9 7 6 11 11 C 1.46903 * 111.00046 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.46999 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00129 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00160 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99559 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00434 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46966 * 60.00134 * 16 14 12 18 18 H 1.48501 * 109.47379 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47406 * 299.99924 * 16 14 12 20 20 C 1.52997 * 109.47127 * 239.99248 * 2 1 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00592 * 1 2 3 23 23 H 1.09001 * 109.47002 * 60.00326 * 1 2 3 24 24 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 25 25 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 26 26 H 1.09002 * 109.46935 * 299.99411 * 5 4 2 27 27 H 1.09001 * 109.46812 * 179.97438 * 5 4 2 28 28 H 1.08993 * 109.47194 * 179.97438 * 6 5 4 29 29 H 1.09002 * 109.46695 * 59.99734 * 6 5 4 30 30 H 1.09008 * 109.46864 * 185.00001 * 9 7 6 31 31 H 1.09000 * 109.47679 * 305.00033 * 9 7 6 32 32 H 1.00904 * 110.99715 * 303.94762 * 10 9 7 33 33 H 1.08991 * 109.47170 * 299.99552 * 11 10 9 34 34 H 1.09001 * 109.46877 * 59.99944 * 11 10 9 35 35 H 0.96997 * 119.99572 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47153 * 180.02562 * 20 2 1 37 37 H 1.09001 * 109.46832 * 60.00321 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.5299 -2.1637 1.2495 6 6 2.0399 -2.8851 0.0003 7 6 1.5300 -2.1639 -1.2490 8 1 0.4400 -2.1638 -1.2490 9 6 2.0405 -2.8849 -2.4981 10 7 1.4552 -4.2308 -2.5602 11 6 1.9235 -4.9542 -3.7499 12 6 1.3038 -6.3276 -3.7789 13 1 0.6298 -6.6327 -2.9921 14 6 1.5981 -7.1951 -4.8094 15 7 2.4192 -6.8237 -5.7673 16 14 0.8305 -8.8977 -4.8452 17 1 -0.6485 -8.7730 -4.8926 18 1 1.3039 -9.6290 -6.0478 19 1 1.2254 -9.6445 -3.6239 20 6 2.0401 -0.7214 -1.2491 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6766 -0.2072 2.1393 25 1 3.1300 -0.7215 1.2491 26 1 0.4399 -2.1636 1.2494 27 1 1.8936 -2.6775 2.1393 28 1 1.6770 -3.9128 0.0007 29 1 3.1299 -2.8850 0.0004 30 1 1.7522 -2.3220 -3.3859 31 1 3.1268 -2.9629 -2.4543 32 1 1.6542 -4.7508 -1.7187 33 1 1.6340 -4.4056 -4.6460 34 1 3.0091 -5.0465 -3.7150 35 1 2.6260 -7.4338 -6.4924 36 1 3.1301 -0.7218 -1.2489 37 1 1.6767 -0.2076 -2.1392 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088430483.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:26 Heat of formation + Delta-G solvation = -39.427570 kcal Electronic energy + Delta-G solvation = -14276.822080 eV Core-core repulsion = 12052.225358 eV Total energy + Delta-G solvation = -2224.596722 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.21828 -35.32707 -32.77078 -31.51625 -30.77078 -26.88777 -26.60853 -24.03861 -22.29394 -21.34996 -20.40495 -18.48271 -16.45662 -15.49930 -15.02562 -14.57606 -14.34326 -13.87469 -13.79155 -13.23742 -12.92819 -12.47231 -12.39903 -11.81657 -11.57802 -11.46823 -11.29977 -10.98821 -10.90112 -10.78446 -10.71988 -10.57434 -10.12097 -9.93811 -9.74680 -9.64485 -9.10175 -8.44491 -7.21422 -6.00007 -4.01950 3.35561 3.39114 3.42449 4.45455 4.75020 4.78408 4.84344 5.22349 5.26010 5.35685 5.41183 5.43814 5.56387 5.65974 5.72935 5.76732 5.81623 5.91224 5.97338 6.08172 6.09825 6.19888 6.29201 6.30831 6.40770 6.43840 6.49742 6.67751 6.80169 7.31877 7.47664 7.82369 8.17778 8.46520 8.68099 9.07473 9.62806 11.11181 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.059822 B = 0.005544 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.946282 B = 5049.527696 C = 5210.020237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 H 0.063 0.937 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.085 4.085 8 H 0.079 0.921 9 C 0.063 3.937 10 N -0.691 5.691 11 C 0.193 3.807 12 C -0.514 4.514 13 H 0.061 0.939 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.109 4.109 21 H 0.065 0.935 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.015 0.985 32 H 0.327 0.673 33 H 0.027 0.973 34 H -0.015 1.015 35 H 0.261 0.739 36 H 0.058 0.942 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.833 12.110 12.257 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 H 0.081 0.919 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.153 4.153 7 C -0.104 4.104 8 H 0.098 0.902 9 C -0.067 4.067 10 N -0.322 5.322 11 C 0.067 3.933 12 C -0.553 4.553 13 H 0.079 0.921 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.727 3.273 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.147 4.147 21 H 0.084 0.916 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.144 0.856 33 H 0.045 0.955 34 H 0.002 0.998 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.327 12.251 11.767 17.038 hybrid contribution 0.644 -1.133 0.036 1.303 sum -0.683 11.118 11.802 16.229 Atomic orbital electron populations 1.21946 0.95417 1.02474 1.00995 1.21072 0.95949 0.98597 0.95225 0.91859 1.21560 1.00313 0.96005 0.97200 1.21558 1.01007 0.95271 0.97840 1.21591 1.00219 0.99486 0.94033 1.21211 1.01217 0.93540 0.94418 0.90246 1.21921 0.95589 0.92397 0.96783 1.60693 1.62203 1.02353 1.06925 1.19539 0.93125 0.92955 0.87731 1.21170 1.27267 0.98167 1.08662 0.92063 1.24997 0.95288 0.98800 0.95522 1.69961 1.35454 1.36419 1.12014 0.86539 0.79647 0.83804 0.77268 1.20156 1.21345 1.20281 1.21585 1.00280 0.95714 0.97089 0.91603 0.93337 0.92919 0.92578 0.92318 0.91721 0.92572 0.91447 0.92600 0.92046 0.96695 0.85577 0.95530 0.99763 0.92895 0.92340 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.50 37.16 0.32 -1.26 16 2 C -0.09 -0.96 3.20 -90.62 -0.29 -1.25 16 3 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.11 -1.17 5.45 -26.73 -0.15 -1.31 16 5 C -0.12 -1.35 5.65 -26.73 -0.15 -1.50 16 6 C -0.12 -1.57 4.97 -26.73 -0.13 -1.70 16 7 C -0.09 -1.24 2.12 -90.62 -0.19 -1.43 16 8 H 0.08 1.22 6.43 -51.93 -0.33 0.89 16 9 C 0.06 1.16 5.14 -3.83 -0.02 1.15 16 10 N -0.69 -15.34 6.49 -115.06 -0.75 -16.09 16 11 C 0.19 5.25 5.44 -4.97 -0.03 5.22 16 12 C -0.51 -14.95 9.32 -34.44 -0.32 -15.27 16 13 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 16 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C -0.11 -1.35 4.73 -26.73 -0.13 -1.47 16 21 H 0.07 0.75 4.81 -51.93 -0.25 0.50 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.99 6.68 -51.93 -0.35 0.64 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.33 6.92 6.98 -39.29 -0.27 6.65 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 34 H -0.02 -0.44 8.14 -51.93 -0.42 -0.87 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 283.90 15.07 4.28 4.28 Total: -1.00 -29.90 283.90 -8.52 -38.42 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.58 Total: 0.36 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -1.19 Total: -17.31 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.01 Total: -42.75 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.90 -8.52 -38.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088430483.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.009 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds