Wall clock time and date at job start Sun Mar 29 2020 21:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99312 * 2 1 3 5 5 C 1.53005 * 109.47159 * 60.00365 * 4 2 1 6 6 C 1.52997 * 109.47452 * 59.99536 * 5 4 2 7 7 C 1.53002 * 109.46817 * 300.00239 * 6 5 4 8 8 H 1.08992 * 109.47063 * 299.99823 * 7 6 5 9 9 C 1.53001 * 109.46637 * 179.97438 * 7 6 5 10 10 N 1.46896 * 109.47098 * 65.00379 * 9 7 6 11 11 C 1.46903 * 111.00046 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.46999 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00129 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00160 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99559 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00434 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46966 * 60.00134 * 16 14 12 18 18 H 1.48501 * 109.47379 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47406 * 299.99924 * 16 14 12 20 20 C 1.52997 * 109.47127 * 239.99248 * 2 1 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00592 * 1 2 3 23 23 H 1.09001 * 109.47002 * 60.00326 * 1 2 3 24 24 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 25 25 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 26 26 H 1.09002 * 109.46935 * 299.99411 * 5 4 2 27 27 H 1.09001 * 109.46812 * 179.97438 * 5 4 2 28 28 H 1.08993 * 109.47194 * 179.97438 * 6 5 4 29 29 H 1.09002 * 109.46695 * 59.99734 * 6 5 4 30 30 H 1.09008 * 109.46864 * 185.00001 * 9 7 6 31 31 H 1.09000 * 109.47679 * 305.00033 * 9 7 6 32 32 H 1.00904 * 110.99715 * 303.94762 * 10 9 7 33 33 H 1.08991 * 109.47170 * 299.99552 * 11 10 9 34 34 H 1.09001 * 109.46877 * 59.99944 * 11 10 9 35 35 H 0.96997 * 119.99572 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47153 * 180.02562 * 20 2 1 37 37 H 1.09001 * 109.46832 * 60.00321 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.5299 -2.1637 1.2495 6 6 2.0399 -2.8851 0.0003 7 6 1.5300 -2.1639 -1.2490 8 1 0.4400 -2.1638 -1.2490 9 6 2.0405 -2.8849 -2.4981 10 7 1.4552 -4.2308 -2.5602 11 6 1.9235 -4.9542 -3.7499 12 6 1.3038 -6.3276 -3.7789 13 1 0.6298 -6.6327 -2.9921 14 6 1.5981 -7.1951 -4.8094 15 7 2.4192 -6.8237 -5.7673 16 14 0.8305 -8.8977 -4.8452 17 1 -0.6485 -8.7730 -4.8926 18 1 1.3039 -9.6290 -6.0478 19 1 1.2254 -9.6445 -3.6239 20 6 2.0401 -0.7214 -1.2491 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6766 -0.2072 2.1393 25 1 3.1300 -0.7215 1.2491 26 1 0.4399 -2.1636 1.2494 27 1 1.8936 -2.6775 2.1393 28 1 1.6770 -3.9128 0.0007 29 1 3.1299 -2.8850 0.0004 30 1 1.7522 -2.3220 -3.3859 31 1 3.1268 -2.9629 -2.4543 32 1 1.6542 -4.7508 -1.7187 33 1 1.6340 -4.4056 -4.6460 34 1 3.0091 -5.0465 -3.7150 35 1 2.6260 -7.4338 -6.4924 36 1 3.1301 -0.7218 -1.2489 37 1 1.6767 -0.2076 -2.1392 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088430483.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:26 Heat of formation + Delta-G solvation = -57.658269 kcal Electronic energy + Delta-G solvation = -14277.612623 eV Core-core repulsion = 12052.225358 eV Total energy + Delta-G solvation = -2225.387265 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.27555 -37.04256 -34.76326 -32.68616 -32.10496 -28.73922 -27.56967 -25.67371 -23.65929 -22.96528 -21.70040 -19.44198 -18.59952 -16.91251 -16.48282 -16.37942 -15.35982 -15.27283 -14.97876 -14.61728 -14.48055 -13.95127 -13.68091 -13.33104 -13.14121 -12.80495 -12.59961 -12.50584 -12.39653 -12.20488 -11.95803 -11.84439 -11.72085 -11.43334 -11.03758 -10.77890 -10.71212 -10.66479 -9.12871 -8.23781 -6.35910 1.40546 1.44791 1.52868 2.39538 3.09148 3.54406 3.82030 3.87316 3.91035 4.22677 4.39020 4.45553 4.52691 4.57195 4.62394 4.74020 4.79752 4.86916 4.90798 5.03393 5.07355 5.12910 5.16052 5.20223 5.25321 5.34206 5.38951 5.44479 5.50488 5.56312 5.61418 5.72558 6.00715 6.44164 6.71622 6.87851 7.35353 8.87928 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.059822 B = 0.005544 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.946282 B = 5049.527696 C = 5210.020237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 H 0.079 0.921 4 C -0.111 4.111 5 C -0.115 4.115 6 C -0.115 4.115 7 C -0.074 4.074 8 H 0.073 0.927 9 C 0.063 3.937 10 N -0.688 5.688 11 C 0.207 3.793 12 C -0.539 4.539 13 H 0.065 0.935 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.977 3.023 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.265 1.265 20 C -0.106 4.106 21 H 0.053 0.947 22 H 0.063 0.937 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.011 0.989 32 H 0.334 0.666 33 H -0.003 1.003 34 H -0.042 1.042 35 H 0.266 0.734 36 H 0.059 0.941 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 12.253 13.802 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.105 4.105 3 H 0.097 0.903 4 C -0.149 4.149 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.093 4.093 8 H 0.092 0.908 9 C -0.067 4.067 10 N -0.319 5.319 11 C 0.079 3.921 12 C -0.577 4.577 13 H 0.083 0.917 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.800 3.200 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.190 1.190 20 C -0.144 4.144 21 H 0.072 0.928 22 H 0.082 0.918 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.152 0.848 33 H 0.015 0.985 34 H -0.025 1.025 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.990 12.414 13.336 18.328 hybrid contribution 0.876 -1.125 -0.464 1.499 sum -1.114 11.290 12.872 17.158 Atomic orbital electron populations 1.21938 0.95205 1.01904 1.01752 1.21071 0.96081 0.99145 0.94206 0.90293 1.21562 1.00465 0.95154 0.97673 1.21529 1.01050 0.95927 0.96749 1.21572 1.00070 0.98877 0.94772 1.21105 1.00712 0.94718 0.92778 0.90845 1.22031 0.95301 0.90618 0.98736 1.60585 1.62278 1.03514 1.05567 1.19207 0.91334 0.92905 0.88650 1.21525 1.27787 0.99154 1.09223 0.91698 1.26007 0.95523 1.03461 0.94794 1.70097 1.36584 1.38188 1.12669 0.85331 0.78826 0.78001 0.77807 1.19250 1.20652 1.18969 1.21568 1.00323 0.94135 0.98410 0.92804 0.91781 0.93037 0.90757 0.92115 0.91626 0.91474 0.92937 0.92791 0.92997 0.97116 0.84759 0.98464 1.02466 0.92549 0.92255 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.50 71.98 0.61 -2.19 16 2 C -0.09 -1.63 3.20 -10.79 -0.03 -1.66 16 3 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.11 -1.97 5.45 30.60 0.17 -1.80 16 5 C -0.12 -2.36 5.65 30.60 0.17 -2.19 16 6 C -0.12 -3.03 4.97 30.59 0.15 -2.88 16 7 C -0.07 -2.14 2.12 -10.79 -0.02 -2.16 16 8 H 0.07 2.23 6.43 -2.39 -0.02 2.21 16 9 C 0.06 2.37 5.14 86.30 0.44 2.81 16 10 N -0.69 -31.32 6.49 -517.93 -3.36 -34.68 16 11 C 0.21 11.67 5.44 85.56 0.47 12.14 16 12 C -0.54 -31.79 9.32 25.60 0.24 -31.55 16 13 H 0.06 3.70 7.81 -2.91 -0.02 3.67 16 14 C 0.00 0.02 5.46 84.65 0.46 0.48 16 15 N -0.94 -57.88 13.29 21.45 0.28 -57.59 16 16 Si 0.98 44.99 29.54 68.60 2.03 47.01 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 20 C -0.11 -2.50 4.73 30.59 0.14 -2.36 16 21 H 0.05 1.13 4.81 -2.39 -0.01 1.12 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.35 6.43 -2.39 -0.02 1.33 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.52 6.68 -2.39 -0.02 1.50 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.33 14.40 6.98 -89.69 -0.63 13.77 16 33 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H -0.04 -2.56 8.14 -2.39 -0.02 -2.58 16 35 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -64.18 283.90 2.14 -62.04 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.39 Total: 14.59 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 2.80 Total: -31.37 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -3.08 Total: -92.28 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.18 2.14 -62.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088430483.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.384 kcal (2) G-P(sol) polarization free energy of solvation -64.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds