Wall clock time and date at job start Sun Mar 29 2020 21:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48497 * 109.47322 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47056 * 119.99730 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99759 * 3 2 1 7 7 C 1.38947 * 120.00367 * 180.26985 * 2 1 3 8 8 H 1.07992 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.37106 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99958 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99760 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99768 * 179.97438 * 10 9 7 13 13 H 1.09001 * 109.60291 * 300.31883 * 12 10 9 14 14 C 1.53346 * 109.60054 * 179.97438 * 12 10 9 15 15 C 1.53069 * 108.42429 * 172.71512 * 14 12 10 16 16 C 1.50169 * 109.89251 * 48.89932 * 15 14 12 17 17 O 1.21280 * 118.24696 * 162.39744 * 16 15 14 18 18 N 1.33350 * 123.51228 * 342.41659 * 16 15 14 19 19 C 1.45756 * 124.10278 * 2.22306 * 18 16 15 20 20 H 0.97005 * 120.00032 * 359.72583 * 1 2 3 21 21 H 0.97000 * 119.99715 * 359.97438 * 9 7 2 22 22 H 1.09007 * 109.67579 * 292.44588 * 14 12 10 23 23 H 1.08999 * 109.67481 * 52.94632 * 14 12 10 24 24 H 1.09002 * 109.39930 * 169.03435 * 15 14 12 25 25 H 1.09009 * 109.40054 * 288.85401 * 15 14 12 26 26 H 0.96991 * 117.95495 * 182.22431 * 18 16 15 27 27 H 1.09004 * 109.30418 * 220.61144 * 19 18 16 28 28 H 1.09006 * 109.29846 * 101.23487 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1018 1.6965 1.2126 6 1 3.1019 1.6965 -1.2125 7 6 2.0090 -1.2033 -0.0057 8 1 3.0889 -1.2032 -0.0061 9 7 1.3234 -2.3906 -0.0118 10 6 1.9973 -3.5578 -0.0178 11 8 3.2103 -3.5577 -0.0183 12 6 1.2438 -4.8629 -0.0240 13 1 0.6124 -4.9247 0.8624 14 6 2.2376 -6.0307 -0.0307 15 6 1.4543 -7.3336 0.1473 16 6 0.2968 -7.3686 -0.8088 17 8 -0.2286 -8.4380 -1.0350 18 7 -0.1839 -6.2869 -1.4228 19 6 0.3779 -4.9495 -1.2814 20 1 -0.4850 0.8401 0.0040 21 1 0.3534 -2.3906 -0.0118 22 1 2.7732 -6.0513 -0.9799 23 1 2.9471 -5.9135 0.7884 24 1 2.1116 -8.1808 -0.0485 25 1 1.0801 -7.3943 1.1693 26 1 -0.9559 -6.3969 -1.9996 27 1 -0.4324 -4.2237 -1.2115 28 1 0.9880 -4.7208 -2.1553 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111325196.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:57 Heat of formation + Delta-G solvation = -90.252709 kcal Electronic energy + Delta-G solvation = -13997.606435 eV Core-core repulsion = 11433.713669 eV Total energy + Delta-G solvation = -2563.892766 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.21953 -38.38949 -35.84955 -34.13727 -32.72507 -31.43372 -29.61434 -25.18642 -24.40152 -22.70196 -19.98927 -18.66053 -18.01192 -17.10395 -16.11571 -15.74508 -15.16418 -14.55753 -14.35350 -14.09165 -13.71099 -13.32948 -12.96809 -12.67428 -11.75947 -11.54571 -11.41685 -11.13381 -10.94372 -10.76600 -10.51575 -10.28826 -9.61959 -9.60800 -8.98355 -8.53946 -8.09540 -6.52699 -3.94145 2.74566 3.12149 3.20481 3.24250 3.38431 3.74674 4.07590 4.58322 4.84054 4.89502 4.95598 5.23208 5.30809 5.49609 5.52072 5.72580 5.85385 5.93918 6.23795 6.33226 6.46685 6.84773 7.41013 7.45169 7.93244 8.29955 8.46763 9.05609 9.40227 9.90303 10.64340 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.066267 B = 0.007050 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.429443 B = 3970.510261 C = 4280.661127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.026 3.974 3 Si 0.931 3.069 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.305 4.305 8 H 0.104 0.896 9 N -0.556 5.556 10 C 0.445 3.555 11 O -0.590 6.590 12 C -0.115 4.115 13 H 0.091 0.909 14 C -0.099 4.099 15 C -0.136 4.136 16 C 0.520 3.480 17 O -0.571 6.571 18 N -0.716 5.716 19 C 0.117 3.883 20 H 0.274 0.726 21 H 0.393 0.607 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.398 0.602 27 H 0.084 0.916 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.252 -6.887 -0.689 7.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.434 4.434 8 H 0.122 0.878 9 N -0.191 5.191 10 C 0.230 3.770 11 O -0.475 6.475 12 C -0.137 4.137 13 H 0.109 0.891 14 C -0.137 4.137 15 C -0.176 4.176 16 C 0.308 3.692 17 O -0.451 6.451 18 N -0.367 5.367 19 C -0.007 4.007 20 H 0.084 0.916 21 H 0.226 0.774 22 H 0.092 0.908 23 H 0.104 0.896 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.233 0.767 27 H 0.102 0.898 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.648 -7.209 -0.658 7.268 hybrid contribution -0.576 1.038 -0.197 1.203 sum -1.224 -6.171 -0.855 6.349 Atomic orbital electron populations 1.69594 1.05976 1.28530 1.49797 1.25282 0.95634 0.99834 0.96916 0.85907 0.78809 0.80306 0.79168 1.20910 1.19813 1.19806 1.19690 0.93441 0.82190 1.48093 0.87817 1.41925 1.09232 1.04658 1.63258 1.19490 0.88068 0.84301 0.85169 1.90535 1.13704 1.86978 1.56269 1.21489 0.97734 0.96010 0.98472 0.89054 1.21415 0.97176 0.90614 1.04461 1.21707 0.95717 1.00608 0.99541 1.20281 0.84832 0.83136 0.80948 1.90723 1.60871 1.28867 1.64650 1.45498 1.34085 1.08283 1.48802 1.21441 0.97980 0.82876 0.98436 0.91631 0.77361 0.90784 0.89573 0.88165 0.88292 0.76708 0.89769 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.25 13.05 55.50 0.72 -22.53 15 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 15 3 Si 0.93 20.17 29.55 -169.99 -5.02 15.15 15 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 7 C -0.30 -8.05 9.68 -14.93 -0.14 -8.19 15 8 H 0.10 2.88 7.16 -52.49 -0.38 2.50 15 9 N -0.56 -13.06 5.20 -10.96 -0.06 -13.12 15 10 C 0.44 9.65 7.08 -10.99 -0.08 9.57 15 11 O -0.59 -14.97 15.47 5.55 0.09 -14.88 15 12 C -0.11 -1.83 2.60 -91.64 -0.24 -2.07 15 13 H 0.09 1.34 8.12 -51.93 -0.42 0.92 15 14 C -0.10 -1.43 4.71 -26.52 -0.12 -1.56 15 15 C -0.14 -1.72 6.03 -28.10 -0.17 -1.89 15 16 C 0.52 7.71 7.71 -11.88 -0.09 7.61 15 17 O -0.57 -10.32 17.78 5.56 0.10 -10.22 15 18 N -0.72 -9.41 5.45 -61.39 -0.33 -9.75 15 19 C 0.12 1.63 6.33 -4.49 -0.03 1.60 15 20 H 0.27 6.75 8.31 -40.82 -0.34 6.41 15 21 H 0.39 8.76 7.57 -40.82 -0.31 8.45 15 22 H 0.07 1.12 8.13 -51.93 -0.42 0.70 15 23 H 0.09 1.30 7.90 -51.93 -0.41 0.89 15 24 H 0.10 1.15 8.14 -51.93 -0.42 0.72 15 25 H 0.10 1.11 8.14 -51.92 -0.42 0.69 15 26 H 0.40 4.64 8.80 -40.82 -0.36 4.28 15 27 H 0.08 1.10 7.88 -51.93 -0.41 0.69 15 28 H 0.07 1.05 8.11 -51.93 -0.42 0.63 15 LS Contribution 245.74 15.07 3.70 3.70 Total: -1.00 -30.83 245.74 -4.88 -35.71 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -3.11 Total: 10.30 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -0.97 Total: 5.64 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.33 Total: -45.40 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: 0.18 Total: -25.10 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.83 -4.88 -35.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111325196.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.542 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds