Wall clock time and date at job start Sun Mar 29 2020 21:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48497 * 109.47322 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47056 * 119.99730 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99759 * 3 2 1 7 7 C 1.38947 * 120.00367 * 180.26985 * 2 1 3 8 8 H 1.07992 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.37106 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99958 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99760 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99768 * 179.97438 * 10 9 7 13 13 H 1.09001 * 109.60291 * 300.31883 * 12 10 9 14 14 C 1.53346 * 109.60054 * 179.97438 * 12 10 9 15 15 C 1.53069 * 108.42429 * 172.71512 * 14 12 10 16 16 C 1.50169 * 109.89251 * 48.89932 * 15 14 12 17 17 O 1.21280 * 118.24696 * 162.39744 * 16 15 14 18 18 N 1.33350 * 123.51228 * 342.41659 * 16 15 14 19 19 C 1.45756 * 124.10278 * 2.22306 * 18 16 15 20 20 H 0.97005 * 120.00032 * 359.72583 * 1 2 3 21 21 H 0.97000 * 119.99715 * 359.97438 * 9 7 2 22 22 H 1.09007 * 109.67579 * 292.44588 * 14 12 10 23 23 H 1.08999 * 109.67481 * 52.94632 * 14 12 10 24 24 H 1.09002 * 109.39930 * 169.03435 * 15 14 12 25 25 H 1.09009 * 109.40054 * 288.85401 * 15 14 12 26 26 H 0.96991 * 117.95495 * 182.22431 * 18 16 15 27 27 H 1.09004 * 109.30418 * 220.61144 * 19 18 16 28 28 H 1.09006 * 109.29846 * 101.23487 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1018 1.6965 1.2126 6 1 3.1019 1.6965 -1.2125 7 6 2.0090 -1.2033 -0.0057 8 1 3.0889 -1.2032 -0.0061 9 7 1.3234 -2.3906 -0.0118 10 6 1.9973 -3.5578 -0.0178 11 8 3.2103 -3.5577 -0.0183 12 6 1.2438 -4.8629 -0.0240 13 1 0.6124 -4.9247 0.8624 14 6 2.2376 -6.0307 -0.0307 15 6 1.4543 -7.3336 0.1473 16 6 0.2968 -7.3686 -0.8088 17 8 -0.2286 -8.4380 -1.0350 18 7 -0.1839 -6.2869 -1.4228 19 6 0.3779 -4.9495 -1.2814 20 1 -0.4850 0.8401 0.0040 21 1 0.3534 -2.3906 -0.0118 22 1 2.7732 -6.0513 -0.9799 23 1 2.9471 -5.9135 0.7884 24 1 2.1116 -8.1808 -0.0485 25 1 1.0801 -7.3943 1.1693 26 1 -0.9559 -6.3969 -1.9996 27 1 -0.4324 -4.2237 -1.2115 28 1 0.9880 -4.7208 -2.1553 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111325196.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:57 Heat of formation + Delta-G solvation = -113.864178 kcal Electronic energy + Delta-G solvation = -13998.630305 eV Core-core repulsion = 11433.713669 eV Total energy + Delta-G solvation = -2564.916636 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.48840 -40.03718 -37.21481 -36.01491 -33.91459 -33.32114 -30.93931 -27.01955 -25.59933 -24.05843 -21.48208 -20.21854 -19.67246 -18.46762 -17.58856 -17.01579 -16.62880 -16.22097 -15.83622 -15.66759 -14.97675 -14.62739 -14.57712 -14.14313 -13.53898 -12.95720 -12.80344 -12.72168 -12.45074 -12.20630 -12.06639 -11.90403 -11.50564 -10.82340 -10.37577 -10.14306 -10.01947 -8.46782 -5.95307 1.40233 1.44699 1.54274 1.58950 1.96906 2.28350 2.33705 3.08711 3.19299 3.65743 3.71149 3.81229 3.96829 4.29804 4.44027 4.54300 4.61950 4.78663 4.91468 5.10914 5.27321 5.42783 5.78438 5.99086 6.27615 6.57462 7.11654 7.16913 7.54142 8.08297 8.69661 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.066267 B = 0.007050 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.429443 B = 3970.510261 C = 4280.661127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.007 4.007 3 Si 0.989 3.011 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.081 0.919 9 N -0.564 5.564 10 C 0.448 3.552 11 O -0.628 6.628 12 C -0.106 4.106 13 H 0.112 0.888 14 C -0.093 4.093 15 C -0.125 4.125 16 C 0.518 3.482 17 O -0.605 6.605 18 N -0.704 5.704 19 C 0.126 3.874 20 H 0.278 0.722 21 H 0.398 0.602 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.407 0.593 27 H 0.097 0.903 28 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 -7.039 -0.530 7.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.208 4.208 3 Si 0.813 3.187 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.099 0.901 9 N -0.200 5.200 10 C 0.234 3.766 11 O -0.516 6.516 12 C -0.128 4.128 13 H 0.130 0.870 14 C -0.131 4.131 15 C -0.164 4.164 16 C 0.307 3.693 17 O -0.487 6.487 18 N -0.355 5.355 19 C 0.001 3.999 20 H 0.088 0.912 21 H 0.233 0.767 22 H 0.083 0.917 23 H 0.099 0.901 24 H 0.134 0.866 25 H 0.138 0.862 26 H 0.244 0.756 27 H 0.115 0.885 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.179 -7.356 -0.507 7.467 hybrid contribution -0.400 1.054 -0.249 1.154 sum -1.579 -6.302 -0.756 6.541 Atomic orbital electron populations 1.69646 1.06740 1.29449 1.49792 1.25974 0.96464 1.02264 0.96097 0.85044 0.77825 0.76896 0.78950 1.19717 1.19773 1.19720 1.19653 0.92827 0.83973 1.50118 0.90099 1.41960 1.09412 1.04614 1.63979 1.20416 0.87865 0.85571 0.82702 1.90512 1.15812 1.87886 1.57367 1.21426 0.98037 0.92934 1.00438 0.86988 1.21354 0.96897 0.91040 1.03836 1.21682 0.94874 0.99763 1.00124 1.20628 0.84985 0.82751 0.80949 1.90720 1.62089 1.30009 1.65918 1.45373 1.34062 1.07578 1.48460 1.21301 0.98026 0.83449 0.97093 0.91226 0.76743 0.91697 0.90111 0.86580 0.86221 0.75646 0.88512 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.72 13.05 21.66 0.28 -46.44 15 2 C -0.01 -0.37 5.50 84.93 0.47 0.09 15 3 Si 0.99 40.90 29.55 68.60 2.03 42.92 15 4 H -0.27 -10.70 7.11 99.48 0.71 -9.99 15 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 15 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 7 C -0.34 -17.94 9.68 84.04 0.81 -17.12 15 8 H 0.08 4.61 7.16 -2.91 -0.02 4.59 15 9 N -0.56 -26.49 5.20 -306.99 -1.60 -28.09 15 10 C 0.45 19.27 7.08 87.66 0.62 19.89 15 11 O -0.63 -32.20 15.47 -3.07 -0.05 -32.25 15 12 C -0.11 -3.21 2.60 -11.45 -0.03 -3.24 15 13 H 0.11 2.99 8.12 -2.39 -0.02 2.97 15 14 C -0.09 -2.55 4.71 30.73 0.14 -2.40 15 15 C -0.13 -2.82 6.03 29.70 0.18 -2.64 15 16 C 0.52 14.14 7.71 87.71 0.68 14.82 15 17 O -0.60 -20.73 17.78 -3.03 -0.05 -20.78 15 18 N -0.70 -16.92 5.45 -467.32 -2.55 -19.46 15 19 C 0.13 3.26 6.33 86.49 0.55 3.81 15 20 H 0.28 13.40 8.31 -92.70 -0.77 12.63 15 21 H 0.40 17.56 7.57 -92.71 -0.70 16.86 15 22 H 0.06 1.89 8.13 -2.38 -0.02 1.87 15 23 H 0.08 2.33 7.90 -2.39 -0.02 2.31 15 24 H 0.12 2.32 8.14 -2.39 -0.02 2.30 15 25 H 0.12 2.27 8.14 -2.38 -0.02 2.25 15 26 H 0.41 8.59 8.80 -92.72 -0.82 7.77 15 27 H 0.10 2.32 7.88 -2.38 -0.02 2.30 15 28 H 0.07 1.87 8.11 -2.38 -0.02 1.85 15 Total: -1.00 -65.27 245.74 1.16 -64.11 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: -0.32 Total: 26.78 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 3.42 Total: 13.21 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -3.86 Total: -93.99 kcal Atomic # 8 Polarization: -52.93 SS G_CDS: -0.10 Total: -53.03 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.92 kcal Total: -65.27 1.16 -64.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111325196.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.755 kcal (2) G-P(sol) polarization free energy of solvation -65.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds