Wall clock time and date at job start Sun Mar 29 2020 21:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 C 1.38174 * 120.01454 * 264.72667 * 10 9 7 12 12 C 1.38230 * 120.06879 * 179.77124 * 11 10 9 13 13 C 1.38410 * 120.09607 * 0.50474 * 12 11 10 14 14 Cl 1.73596 * 119.98667 * 179.77084 * 13 12 11 15 15 C 1.38243 * 120.02753 * 359.74579 * 13 12 11 16 16 C 1.38719 * 120.01633 * 84.99808 * 10 9 7 17 17 O 1.35899 * 120.04899 * 0.02562 * 16 10 9 18 18 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 20 20 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 21 21 H 1.07999 * 119.96906 * 0.02562 * 11 10 9 22 22 H 1.07991 * 119.95080 * 180.25222 * 12 11 10 23 23 H 1.08000 * 120.02710 * 180.02562 * 15 13 12 24 24 H 0.96697 * 114.00510 * 89.99129 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0137 -2.6150 -0.0010 11 6 4.3482 -3.2297 1.1904 12 6 4.8045 -4.5345 1.1923 13 6 4.9374 -5.2250 0.0001 14 17 5.5164 -6.8616 0.0052 15 6 4.6088 -4.6121 -1.1947 16 6 4.1458 -3.3044 -1.1975 17 8 3.8230 -2.6994 -2.3707 18 1 -0.4850 0.8401 0.0004 19 1 3.8745 -0.6801 -0.8911 20 1 3.8751 -0.6805 0.8889 21 1 4.2491 -2.6916 2.1215 22 1 5.0615 -5.0145 2.1249 23 1 4.7122 -5.1511 -2.1249 24 1 4.5593 -2.2312 -2.7875 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114155895.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:47 Heat of formation + Delta-G solvation = -56.505451 kcal Electronic energy + Delta-G solvation = -11518.481775 eV Core-core repulsion = 9228.635719 eV Total energy + Delta-G solvation = -2289.846056 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.034 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.80910 -37.98397 -37.05920 -35.32797 -33.20121 -31.03814 -29.14151 -24.93482 -23.68114 -22.03837 -19.34448 -18.95982 -17.23379 -17.02389 -16.41308 -16.05594 -15.08251 -14.77920 -14.27688 -14.14066 -13.76613 -13.55060 -13.06599 -12.58345 -12.22037 -12.12820 -11.90420 -11.78917 -11.59789 -11.26807 -10.76969 -9.79970 -9.31535 -8.27468 -6.32279 0.21048 0.27609 1.11212 1.38106 1.40280 1.51493 2.36985 2.60987 3.06999 3.37930 3.90115 4.12356 4.14843 4.44899 4.67742 4.88766 5.04478 5.09592 5.18531 5.32935 5.56219 5.74303 5.78920 6.26122 6.72224 6.94153 7.29766 8.89713 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.058180 B = 0.007694 C = 0.007472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.148336 B = 3638.531873 C = 3746.612537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.240 1.240 7 C -0.512 4.512 8 H 0.019 0.981 9 C 0.028 3.972 10 C -0.088 4.088 11 C -0.102 4.102 12 C -0.114 4.114 13 C -0.039 4.039 14 Cl -0.063 7.063 15 C -0.140 4.140 16 C 0.105 3.895 17 O -0.499 6.499 18 H 0.266 0.734 19 H 0.034 0.966 20 H 0.038 0.962 21 H 0.143 0.857 22 H 0.158 0.842 23 H 0.149 0.851 24 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.318 -7.260 -0.022 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.163 1.163 7 C -0.550 4.550 8 H 0.037 0.963 9 C -0.009 4.009 10 C -0.088 4.088 11 C -0.121 4.121 12 C -0.132 4.132 13 C -0.066 4.066 14 Cl -0.034 7.034 15 C -0.159 4.159 16 C 0.060 3.940 17 O -0.311 6.311 18 H 0.075 0.925 19 H 0.052 0.948 20 H 0.056 0.944 21 H 0.161 0.839 22 H 0.175 0.825 23 H 0.167 0.833 24 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 13.676 -7.535 0.079 15.614 hybrid contribution 0.027 0.734 -0.283 0.788 sum 13.703 -6.801 -0.205 15.299 Atomic orbital electron populations 1.70078 1.08486 1.28198 1.52574 1.26040 0.95653 1.03595 0.94075 0.85585 0.79572 0.77735 0.79277 1.19134 1.21057 1.16320 1.21062 0.90836 0.92672 1.50423 0.96254 1.18524 0.94144 0.90346 0.97907 1.20735 0.96291 0.98212 0.93599 1.21125 0.98314 0.94800 0.97820 1.21240 1.00314 0.93966 0.97708 1.20677 1.04073 0.87119 0.94731 1.98340 1.87214 1.18925 1.98929 1.21320 1.01317 0.94727 0.98584 1.18286 0.98397 0.91483 0.85839 1.84879 1.40465 1.71503 1.34296 0.92471 0.94774 0.94385 0.83903 0.82451 0.83331 0.73908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.43 13.96 21.45 0.30 -60.13 14 2 C 0.00 0.16 5.47 84.66 0.46 0.62 14 3 Si 0.96 43.32 27.47 68.60 1.88 45.21 14 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 14 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 14 6 H -0.24 -9.79 6.54 99.48 0.65 -9.14 14 7 C -0.51 -29.82 9.65 25.60 0.25 -29.57 14 8 H 0.02 1.28 7.98 -2.91 -0.02 1.26 14 9 C 0.03 1.28 3.90 29.10 0.11 1.40 14 10 C -0.09 -3.51 5.08 -19.76 -0.10 -3.61 14 11 C -0.10 -3.48 9.67 22.25 0.22 -3.26 14 12 C -0.11 -3.26 9.83 22.31 0.22 -3.04 14 13 C -0.04 -1.14 6.32 22.31 0.14 -0.99 14 14 Cl -0.06 -1.51 28.95 -2.72 -0.08 -1.59 14 15 C -0.14 -4.37 9.77 22.39 0.22 -4.15 14 16 C 0.10 3.88 6.68 22.50 0.15 4.03 14 17 O -0.50 -18.20 12.64 -92.41 -1.17 -19.37 14 18 H 0.27 15.69 8.31 -92.70 -0.77 14.92 14 19 H 0.03 1.50 7.12 -2.39 -0.02 1.48 14 20 H 0.04 1.66 7.11 -2.39 -0.02 1.64 14 21 H 0.14 4.44 8.06 -2.91 -0.02 4.42 14 22 H 0.16 3.51 8.06 -2.92 -0.02 3.48 14 23 H 0.15 3.99 8.06 -2.91 -0.02 3.97 14 24 H 0.40 9.91 9.06 -74.06 -0.67 9.24 14 Total: -1.00 -69.23 233.89 3.10 -66.13 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 0.50 Total: 8.35 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 1.67 Total: -38.59 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.30 Total: -60.13 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -1.17 Total: -19.37 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.21 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -69.23 3.10 -66.13 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114155895.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.621 kcal (2) G-P(sol) polarization free energy of solvation -69.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds