Wall clock time and date at job start Sun Mar 29 2020 21:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.01623 * 2 1 4 4 C 1.54267 * 110.07299 * 121.41431 * 2 1 3 5 5 C 1.54893 * 104.19353 * 142.91957 * 4 2 1 6 6 C 1.54889 * 102.74709 * 322.05534 * 5 4 2 7 7 H 1.09005 * 110.60495 * 279.21027 * 6 5 4 8 8 N 1.46904 * 110.48748 * 156.62375 * 6 5 4 9 9 C 1.46896 * 111.00095 * 90.22393 * 8 6 5 10 10 C 1.52997 * 109.47114 * 180.02562 * 9 8 6 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47418 * 89.99710 * 16 14 12 18 18 H 1.48498 * 109.47091 * 209.99770 * 16 14 12 19 19 H 1.48508 * 109.47394 * 329.99535 * 16 14 12 20 20 C 1.53874 * 110.03372 * 238.60772 * 2 1 3 21 21 H 1.09003 * 109.47220 * 181.39550 * 1 2 3 22 22 H 1.08998 * 109.47198 * 301.39707 * 1 2 3 23 23 H 1.09003 * 109.47066 * 61.39251 * 1 2 3 24 24 H 1.08995 * 110.48544 * 261.59111 * 4 2 1 25 25 H 1.08997 * 110.48706 * 24.24078 * 4 2 1 26 26 H 1.08995 * 110.75587 * 203.74647 * 5 4 2 27 27 H 1.08997 * 110.76112 * 80.37099 * 5 4 2 28 28 H 1.00907 * 110.99561 * 326.27341 * 8 6 5 29 29 H 1.08996 * 109.47194 * 60.00616 * 9 8 6 30 30 H 1.09001 * 109.47271 * 300.00180 * 9 8 6 31 31 H 1.09001 * 109.47502 * 60.00479 * 10 9 8 32 32 H 1.09001 * 109.47289 * 300.00275 * 10 9 8 33 33 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 34 34 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 35 35 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 36 36 H 1.09002 * 110.03427 * 121.38032 * 20 2 1 37 37 H 1.09003 * 110.03246 * 359.95215 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0594 -0.7552 1.2366 5 6 3.3150 -1.4995 0.7182 6 6 2.8885 -1.9396 -0.7043 7 1 2.2794 -2.8425 -0.6600 8 7 4.0692 -2.1585 -1.5505 9 6 4.5284 -3.5511 -1.4635 10 6 5.7570 -3.7397 -2.3556 11 6 6.2349 -5.1904 -2.2654 12 6 7.4454 -5.3760 -3.1436 13 1 7.8346 -4.5427 -3.7098 14 6 8.0553 -6.6098 -3.2251 15 7 7.5810 -7.6246 -2.5361 16 14 9.5553 -6.8400 -4.3143 17 1 10.7846 -6.5608 -3.5294 18 1 9.5942 -8.2378 -4.8143 19 1 9.4797 -5.9046 -5.4653 20 6 2.0571 -0.7530 -1.2340 21 1 -0.3634 -1.0274 0.0250 22 1 -0.3633 0.5354 0.8772 23 1 -0.3633 0.4921 -0.9022 24 1 2.3306 -0.0533 2.0251 25 1 1.3159 -1.4663 1.5966 26 1 3.5347 -2.3666 1.3411 27 1 4.1719 -0.8273 0.6739 28 1 4.8104 -1.5176 -1.3096 29 1 3.7323 -4.2176 -1.7953 30 1 4.7903 -3.7835 -0.4312 31 1 6.5530 -3.0733 -2.0234 32 1 5.4956 -3.5071 -3.3879 33 1 6.4963 -5.4233 -1.2332 34 1 5.4388 -5.8565 -2.5979 35 1 8.0099 -8.4927 -2.5937 36 1 2.6860 -0.0943 -1.8330 37 1 1.2229 -1.1192 -1.8325 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121998208.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:08 Heat of formation + Delta-G solvation = -40.531677 kcal Electronic energy + Delta-G solvation = -13756.816236 eV Core-core repulsion = 11532.171636 eV Total energy + Delta-G solvation = -2224.644600 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.86822 -35.52783 -33.31171 -31.43040 -29.89021 -28.12256 -25.83983 -24.27686 -22.30360 -20.80653 -20.08635 -19.33762 -16.33628 -15.95468 -15.46975 -14.62041 -14.42668 -13.92907 -13.55229 -13.32378 -13.19945 -12.39699 -12.21745 -11.94207 -11.90421 -11.27892 -11.11174 -10.89529 -10.83579 -10.77538 -10.73629 -10.53678 -10.46441 -10.34956 -9.65388 -9.28376 -9.01038 -8.31187 -8.03272 -5.96347 -3.98313 3.34500 3.40441 3.44519 4.31607 4.49698 4.58656 4.64360 4.86075 5.18508 5.28865 5.38340 5.39371 5.46066 5.52162 5.64841 5.70399 5.81210 5.83739 5.90796 5.94885 6.00131 6.05942 6.16870 6.27720 6.37107 6.37840 6.77769 6.85064 7.18433 7.45335 7.70973 7.73295 7.88171 8.04420 8.47918 9.08996 9.65497 11.15170 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.087205 B = 0.004350 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.006137 B = 6435.158539 C = 6522.398630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.068 0.932 4 C -0.117 4.117 5 C -0.155 4.155 6 C 0.083 3.917 7 H 0.078 0.922 8 N -0.686 5.686 9 C 0.059 3.941 10 C -0.107 4.107 11 C 0.022 3.978 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.110 4.110 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.337 0.663 29 H 0.065 0.935 30 H 0.023 0.977 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.013 0.987 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.070 0.930 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.754 13.752 6.368 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.087 0.913 4 C -0.155 4.155 5 C -0.195 4.195 6 C -0.028 4.028 7 H 0.097 0.903 8 N -0.315 5.315 9 C -0.069 4.069 10 C -0.145 4.145 11 C -0.016 4.016 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.149 4.149 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.156 0.844 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.093 13.444 5.803 18.991 hybrid contribution 1.265 -0.283 0.388 1.353 sum -10.828 13.161 6.191 18.133 Atomic orbital electron populations 1.21885 0.95248 1.01721 1.01277 1.21758 0.95477 0.99334 0.95202 0.91338 1.22361 0.97256 0.98832 0.97049 1.23225 0.97941 1.00055 0.98231 1.22443 0.92791 0.98009 0.89541 0.90333 1.60613 1.08555 1.06221 1.56112 1.22138 0.98568 0.87910 0.98308 1.21628 0.94101 1.00417 0.98402 1.19069 0.95921 0.89637 0.96980 1.21270 1.12363 0.95442 1.26579 0.92676 1.25033 0.97497 0.96114 0.95920 1.69965 1.40837 1.01176 1.41690 0.86594 0.83206 0.77300 0.80901 1.20718 1.21249 1.19843 1.22232 0.99162 0.96799 0.96674 0.92611 0.93062 0.92787 0.92064 0.91611 0.91712 0.91417 0.84443 0.91632 0.95835 0.93724 0.92610 0.96841 0.96588 0.93062 0.91171 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.85 37.16 0.33 -0.86 16 2 C -0.10 -0.93 3.50 -89.50 -0.31 -1.24 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.12 -1.12 6.36 -25.07 -0.16 -1.28 16 5 C -0.16 -1.76 6.46 -24.74 -0.16 -1.92 16 6 C 0.08 1.06 3.19 -66.05 -0.21 0.85 16 7 H 0.08 1.06 7.82 -51.93 -0.41 0.65 16 8 N -0.69 -10.39 6.29 -104.98 -0.66 -11.05 16 9 C 0.06 1.06 5.55 -3.83 -0.02 1.04 16 10 C -0.11 -2.30 5.41 -26.73 -0.14 -2.44 16 11 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 12 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 13 H 0.05 1.56 7.74 -52.48 -0.41 1.15 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 16 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.11 -1.23 6.19 -25.61 -0.16 -1.39 16 21 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 22 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.61 7.84 -51.93 -0.41 0.21 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.76 7.79 -51.93 -0.40 0.36 16 28 H 0.34 4.83 8.23 -39.29 -0.32 4.51 16 29 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 37 H 0.06 0.72 7.67 -51.93 -0.40 0.32 16 LS Contribution 296.54 15.07 4.47 4.47 Total: -1.00 -29.93 296.54 -8.83 -38.76 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.97 Total: -1.77 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -1.39 Total: -20.68 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.08 Total: -37.79 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.93 -8.83 -38.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121998208.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.775 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds