Wall clock time and date at job start Sun Mar 29 2020 21:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.01623 * 2 1 4 4 C 1.54267 * 110.07299 * 121.41431 * 2 1 3 5 5 C 1.54893 * 104.19353 * 142.91957 * 4 2 1 6 6 C 1.54889 * 102.74709 * 322.05534 * 5 4 2 7 7 H 1.09005 * 110.60495 * 279.21027 * 6 5 4 8 8 N 1.46904 * 110.48748 * 156.62375 * 6 5 4 9 9 C 1.46896 * 111.00095 * 90.22393 * 8 6 5 10 10 C 1.52997 * 109.47114 * 180.02562 * 9 8 6 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47418 * 89.99710 * 16 14 12 18 18 H 1.48498 * 109.47091 * 209.99770 * 16 14 12 19 19 H 1.48508 * 109.47394 * 329.99535 * 16 14 12 20 20 C 1.53874 * 110.03372 * 238.60772 * 2 1 3 21 21 H 1.09003 * 109.47220 * 181.39550 * 1 2 3 22 22 H 1.08998 * 109.47198 * 301.39707 * 1 2 3 23 23 H 1.09003 * 109.47066 * 61.39251 * 1 2 3 24 24 H 1.08995 * 110.48544 * 261.59111 * 4 2 1 25 25 H 1.08997 * 110.48706 * 24.24078 * 4 2 1 26 26 H 1.08995 * 110.75587 * 203.74647 * 5 4 2 27 27 H 1.08997 * 110.76112 * 80.37099 * 5 4 2 28 28 H 1.00907 * 110.99561 * 326.27341 * 8 6 5 29 29 H 1.08996 * 109.47194 * 60.00616 * 9 8 6 30 30 H 1.09001 * 109.47271 * 300.00180 * 9 8 6 31 31 H 1.09001 * 109.47502 * 60.00479 * 10 9 8 32 32 H 1.09001 * 109.47289 * 300.00275 * 10 9 8 33 33 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 34 34 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 35 35 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 36 36 H 1.09002 * 110.03427 * 121.38032 * 20 2 1 37 37 H 1.09003 * 110.03246 * 359.95215 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0594 -0.7552 1.2366 5 6 3.3150 -1.4995 0.7182 6 6 2.8885 -1.9396 -0.7043 7 1 2.2794 -2.8425 -0.6600 8 7 4.0692 -2.1585 -1.5505 9 6 4.5284 -3.5511 -1.4635 10 6 5.7570 -3.7397 -2.3556 11 6 6.2349 -5.1904 -2.2654 12 6 7.4454 -5.3760 -3.1436 13 1 7.8346 -4.5427 -3.7098 14 6 8.0553 -6.6098 -3.2251 15 7 7.5810 -7.6246 -2.5361 16 14 9.5553 -6.8400 -4.3143 17 1 10.7846 -6.5608 -3.5294 18 1 9.5942 -8.2378 -4.8143 19 1 9.4797 -5.9046 -5.4653 20 6 2.0571 -0.7530 -1.2340 21 1 -0.3634 -1.0274 0.0250 22 1 -0.3633 0.5354 0.8772 23 1 -0.3633 0.4921 -0.9022 24 1 2.3306 -0.0533 2.0251 25 1 1.3159 -1.4663 1.5966 26 1 3.5347 -2.3666 1.3411 27 1 4.1719 -0.8273 0.6739 28 1 4.8104 -1.5176 -1.3096 29 1 3.7323 -4.2176 -1.7953 30 1 4.7903 -3.7835 -0.4312 31 1 6.5530 -3.0733 -2.0234 32 1 5.4956 -3.5071 -3.3879 33 1 6.4963 -5.4233 -1.2332 34 1 5.4388 -5.8565 -2.5979 35 1 8.0099 -8.4927 -2.5937 36 1 2.6860 -0.0943 -1.8330 37 1 1.2229 -1.1192 -1.8325 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121998208.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:07 Heat of formation + Delta-G solvation = -58.145566 kcal Electronic energy + Delta-G solvation = -13757.580031 eV Core-core repulsion = 11532.171636 eV Total energy + Delta-G solvation = -2225.408396 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.82585 -36.98241 -35.19659 -33.09730 -30.96236 -29.33352 -27.48120 -25.32490 -24.04073 -22.14080 -21.44359 -20.26307 -18.50426 -16.95459 -16.74050 -16.45592 -15.95885 -15.06958 -14.72209 -14.39168 -14.21802 -13.99534 -13.71362 -13.51549 -12.91210 -12.88543 -12.63253 -12.45503 -12.36754 -12.04170 -11.72258 -11.64168 -11.56438 -11.49888 -11.35809 -11.25368 -11.00612 -10.55956 -9.26822 -8.20575 -6.31948 1.39890 1.41671 1.53095 2.40960 3.12362 3.20792 3.73219 3.75080 3.98456 4.19360 4.33864 4.41751 4.47363 4.56860 4.68050 4.70402 4.71998 4.78864 4.92265 4.97200 5.01914 5.06854 5.14454 5.18329 5.22716 5.29224 5.35538 5.41278 5.51924 5.60202 5.74145 5.84981 6.13965 6.27802 6.52175 6.84918 7.37377 8.91491 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.087205 B = 0.004350 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.006137 B = 6435.158539 C = 6522.398630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.112 4.112 5 C -0.153 4.153 6 C 0.078 3.922 7 H 0.069 0.931 8 N -0.686 5.686 9 C 0.074 3.926 10 C -0.093 4.093 11 C 0.025 3.975 12 C -0.544 4.544 13 H 0.060 0.940 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.263 1.263 20 C -0.107 4.107 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.344 0.656 29 H 0.058 0.942 30 H 0.021 0.979 31 H 0.051 0.949 32 H 0.051 0.949 33 H -0.009 1.009 34 H -0.009 1.009 35 H 0.264 0.736 36 H 0.066 0.934 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.669 15.162 6.255 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.095 0.905 4 C -0.150 4.150 5 C -0.193 4.193 6 C -0.032 4.032 7 H 0.087 0.913 8 N -0.317 5.317 9 C -0.056 4.056 10 C -0.131 4.131 11 C -0.013 4.013 12 C -0.582 4.582 13 H 0.078 0.922 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.145 4.145 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.163 0.837 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.009 0.991 34 H 0.009 0.991 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.020 14.878 5.697 19.957 hybrid contribution 1.206 -0.729 0.444 1.477 sum -10.814 14.149 6.140 18.838 Atomic orbital electron populations 1.21869 0.94264 1.01776 1.02064 1.21736 0.96277 0.99339 0.93979 0.90526 1.22353 0.96294 0.98955 0.97446 1.23180 0.99003 1.00030 0.97039 1.22531 0.91845 0.98484 0.90361 0.91279 1.60557 1.09368 1.04474 1.57259 1.21826 0.96774 0.89757 0.97203 1.21384 0.95705 0.96953 0.99030 1.18978 0.94773 0.92487 0.95074 1.21705 1.13348 0.95980 1.27181 0.92220 1.26016 1.00918 0.95692 0.97353 1.70097 1.42492 1.01778 1.43107 0.85413 0.78923 0.77510 0.78996 1.19644 1.20646 1.18739 1.22199 0.98725 0.96066 0.97493 0.92961 0.91918 0.92385 0.90747 0.91340 0.92526 0.91140 0.83738 0.92392 0.96028 0.93074 0.92980 0.99102 0.99106 0.92736 0.91557 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.85 71.98 0.64 -1.40 16 2 C -0.09 -1.57 3.50 -10.07 -0.04 -1.60 16 3 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 4 C -0.11 -1.92 6.36 31.67 0.20 -1.72 16 5 C -0.15 -3.27 6.46 31.89 0.21 -3.07 16 6 C 0.08 1.92 3.19 45.99 0.15 2.07 16 7 H 0.07 1.84 7.82 -2.38 -0.02 1.82 16 8 N -0.69 -20.30 6.29 -486.04 -3.06 -23.36 16 9 C 0.07 2.65 5.55 86.30 0.48 3.13 16 10 C -0.09 -3.99 5.41 30.60 0.17 -3.83 16 11 C 0.02 1.34 4.97 29.85 0.15 1.49 16 12 C -0.54 -31.95 9.11 25.60 0.23 -31.71 16 13 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 14 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 15 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 16 Si 0.97 45.05 29.54 68.60 2.03 47.07 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 20 C -0.11 -2.22 6.19 31.32 0.19 -2.03 16 21 H 0.05 0.78 8.12 -2.39 -0.02 0.76 16 22 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.14 7.84 -2.39 -0.02 1.12 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.47 7.79 -2.39 -0.02 1.45 16 28 H 0.34 9.45 8.23 -89.69 -0.74 8.71 16 29 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 30 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 33 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.07 1.44 8.04 -2.39 -0.02 1.42 16 37 H 0.06 1.34 7.67 -2.39 -0.02 1.32 16 Total: -1.00 -63.58 296.54 2.35 -61.23 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.26 Total: 11.14 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 2.84 Total: -38.34 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -2.77 Total: -81.10 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -63.58 2.35 -61.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121998208.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.083 kcal (2) G-P(sol) polarization free energy of solvation -63.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds