Wall clock time and date at job start Sun Mar 29 2020 21:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 110.43459 * 2 1 4 4 C 1.54262 * 110.48671 * 122.54120 * 2 1 3 5 5 C 1.53875 * 106.60194 * 142.42191 * 4 2 1 6 6 C 1.54268 * 106.59351 * 0.02562 * 5 4 2 7 7 H 1.09000 * 110.48477 * 95.20497 * 6 5 4 8 8 N 1.46906 * 110.48469 * 217.71317 * 6 5 4 9 9 C 1.46902 * 110.99573 * 273.54815 * 8 6 5 10 10 C 1.53008 * 109.46622 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.46689 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46812 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00063 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00212 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00189 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99712 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47426 * 89.99638 * 16 14 12 18 18 H 1.48501 * 109.47045 * 210.00047 * 16 14 12 19 19 H 1.48507 * 109.46759 * 330.00040 * 16 14 12 20 20 C 1.54888 * 104.20043 * 336.38913 * 6 5 4 21 21 H 1.08997 * 109.47011 * 298.91698 * 1 2 3 22 22 H 1.09002 * 109.46779 * 58.90912 * 1 2 3 23 23 H 1.08991 * 109.47134 * 178.90988 * 1 2 3 24 24 H 1.09005 * 110.03065 * 23.13295 * 4 2 1 25 25 H 1.09000 * 110.03220 * 261.70748 * 4 2 1 26 26 H 1.09000 * 110.03144 * 240.71597 * 5 4 2 27 27 H 1.08995 * 110.03399 * 119.28748 * 5 4 2 28 28 H 1.00896 * 111.00309 * 149.59227 * 8 6 5 29 29 H 1.08990 * 109.47358 * 299.99539 * 9 8 6 30 30 H 1.09004 * 109.47457 * 60.00221 * 9 8 6 31 31 H 1.09006 * 109.47203 * 299.99590 * 10 9 8 32 32 H 1.08995 * 109.47152 * 60.00028 * 10 9 8 33 33 H 1.09006 * 109.46807 * 299.99641 * 11 10 9 34 34 H 1.08995 * 109.47458 * 60.00024 * 11 10 9 35 35 H 0.96997 * 120.00150 * 179.97438 * 15 14 12 36 36 H 1.08993 * 110.75832 * 156.25729 * 20 6 5 37 37 H 1.09002 * 110.75512 * 279.63194 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0699 -0.7773 1.2182 5 6 3.3186 -1.5369 0.7368 6 6 3.4942 -1.1941 -0.7570 7 1 4.1938 -0.3673 -0.8789 8 7 3.9566 -2.3717 -1.5038 9 6 5.4212 -2.4783 -1.4642 10 6 5.8639 -3.7140 -2.2503 11 6 7.3894 -3.8254 -2.2085 12 6 7.8255 -5.0422 -2.9833 13 1 7.0884 -5.6732 -3.4577 14 6 9.1655 -5.3500 -3.0866 15 7 9.5461 -6.4121 -3.7624 16 14 10.4405 -4.2582 -2.2668 17 1 10.6907 -4.7411 -0.8850 18 1 11.7050 -4.3044 -3.0439 19 1 9.9390 -2.8612 -2.2197 20 6 2.0755 -0.7806 -1.2212 21 1 -0.3633 0.4969 0.8995 22 1 -0.3633 0.5307 -0.8801 23 1 -0.3633 -1.0274 -0.0195 24 1 1.3184 -1.4819 1.5745 25 1 2.3390 -0.0834 2.0145 26 1 3.1730 -2.6102 0.8595 27 1 4.1935 -1.2117 1.2996 28 1 3.6211 -2.3513 -2.4551 29 1 5.8626 -1.5867 -1.9094 30 1 5.7511 -2.5691 -0.4292 31 1 5.4226 -4.6056 -1.8047 32 1 5.5340 -3.6237 -3.2852 33 1 7.8311 -2.9339 -2.6539 34 1 7.7189 -3.9159 -1.1735 35 1 10.4888 -6.6284 -3.8354 36 1 2.1287 -0.1368 -2.0991 37 1 1.4633 -1.6598 -1.4221 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121998672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:10 Heat of formation + Delta-G solvation = -55.706716 kcal Electronic energy + Delta-G solvation = -13788.620967 eV Core-core repulsion = 11563.318328 eV Total energy + Delta-G solvation = -2225.302639 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.73405 -37.02201 -35.15225 -33.31872 -31.16561 -29.55665 -27.58139 -25.29929 -23.85252 -22.00281 -21.02972 -20.37225 -18.89728 -17.28932 -16.47100 -16.41181 -15.86691 -15.44684 -14.79765 -14.64192 -14.33675 -14.07669 -13.80376 -13.45235 -13.05690 -12.83656 -12.55591 -12.39245 -12.00348 -11.82049 -11.78126 -11.74599 -11.51445 -11.43605 -11.38902 -11.26259 -11.09775 -10.77205 -9.35387 -8.30137 -6.34601 1.35406 1.37304 1.49604 2.35912 3.04911 3.20624 3.63913 3.75403 4.03587 4.20262 4.29021 4.39780 4.52612 4.56475 4.64628 4.68084 4.74680 4.76500 4.87175 4.92710 5.00089 5.06022 5.12456 5.15936 5.20877 5.26974 5.37109 5.39878 5.52107 5.59262 5.60259 5.65636 6.17821 6.29615 6.51797 6.73616 7.30003 8.86966 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.072572 B = 0.004719 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.731820 B = 5931.668914 C = 6115.599017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.118 4.118 6 C 0.076 3.924 7 H 0.044 0.956 8 N -0.690 5.690 9 C 0.071 3.929 10 C -0.091 4.091 11 C -0.010 4.010 12 C -0.535 4.535 13 H 0.029 0.971 14 C 0.001 3.999 15 N -0.953 5.953 16 Si 0.955 3.045 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.246 1.246 20 C -0.116 4.116 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.344 0.656 29 H 0.029 0.971 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.020 0.980 34 H 0.018 0.982 35 H 0.267 0.733 36 H 0.070 0.930 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.626 16.156 9.284 24.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 H 0.096 0.904 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.034 4.034 7 H 0.062 0.938 8 N -0.321 5.321 9 C -0.058 4.058 10 C -0.129 4.129 11 C -0.048 4.048 12 C -0.573 4.573 13 H 0.048 0.952 14 C -0.195 4.195 15 N -0.594 5.594 16 Si 0.778 3.222 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.170 1.170 20 C -0.154 4.154 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.162 0.838 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.582 15.630 9.760 24.132 hybrid contribution 1.180 0.362 -0.660 1.400 sum -14.402 15.992 9.100 23.366 Atomic orbital electron populations 1.21774 0.93980 1.01916 1.02152 1.21893 0.96273 0.98984 0.94021 0.90422 1.22179 0.96528 0.98772 0.97781 1.22176 0.98132 1.00649 0.94653 1.22483 0.96193 0.90174 0.94543 0.93822 1.60561 1.10023 1.41823 1.19675 1.21900 0.87567 0.96372 0.99985 1.21275 0.95518 0.97212 0.98885 1.19492 0.94345 0.95113 0.95861 1.21522 0.92688 1.10328 1.32749 0.95243 1.26083 1.01218 0.96611 0.95629 1.70075 1.17088 1.28509 1.43688 0.85590 0.77574 0.80358 0.78696 1.19073 1.20803 1.16994 1.22695 0.94447 1.00109 0.98168 0.91922 0.92225 0.92831 0.91487 0.91194 0.92162 0.92662 0.83801 0.95280 0.91620 0.93361 0.93414 0.96210 0.96366 0.92452 0.91112 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.12 71.98 0.66 -1.18 16 2 C -0.09 -1.44 3.45 -9.73 -0.03 -1.48 16 3 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.11 -1.95 6.37 31.32 0.20 -1.76 16 5 C -0.12 -2.60 6.45 31.32 0.20 -2.40 16 6 C 0.08 1.73 3.17 45.99 0.15 1.88 16 7 H 0.04 1.03 7.87 -2.39 -0.02 1.01 16 8 N -0.69 -19.15 6.29 -486.01 -3.06 -22.21 16 9 C 0.07 2.30 5.53 86.31 0.48 2.78 16 10 C -0.09 -3.69 5.41 30.60 0.17 -3.53 16 11 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 12 C -0.53 -32.00 9.66 25.60 0.25 -31.75 16 13 H 0.03 1.94 7.99 -2.91 -0.02 1.91 16 14 C 0.00 0.06 5.47 84.66 0.46 0.52 16 15 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 16 Si 0.95 45.15 27.47 68.60 1.88 47.03 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 19 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 20 C -0.12 -2.14 5.74 31.88 0.18 -1.95 16 21 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 22 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 24 H 0.07 1.11 7.84 -2.38 -0.02 1.09 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.53 8.04 -2.39 -0.02 1.51 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 28 H 0.34 8.94 8.47 -89.70 -0.76 8.18 16 29 H 0.03 0.91 8.08 -2.39 -0.02 0.89 16 30 H 0.07 2.14 8.12 -2.38 -0.02 2.12 16 31 H 0.05 2.06 8.14 -2.38 -0.02 2.05 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.02 0.92 7.20 -2.38 -0.02 0.91 16 34 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 35 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.43 8.06 -2.39 -0.02 1.41 16 Total: -1.00 -65.69 293.71 2.14 -63.55 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.19 Total: 11.77 kcal Atomic # 6 Polarization: -42.06 SS G_CDS: 2.83 Total: -39.23 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -2.76 Total: -83.12 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal Total: -65.69 2.14 -63.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121998672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.840 kcal (2) G-P(sol) polarization free energy of solvation -65.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds