Wall clock time and date at job start Sun Mar 29 2020 21:27:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53000 * 109.47119 * 2 1
4 4 H 1.09002 * 109.47338 * 54.86811 * 3 2 1
5 5 C 1.50695 * 109.47016 * 174.87065 * 3 2 1
6 6 H 1.08002 * 119.99853 * 120.00132 * 5 3 2
7 7 C 1.37878 * 120.00071 * 299.99450 * 5 3 2
8 8 N 1.31514 * 120.00089 * 0.02562 * 7 5 3
9 9 Si 1.86804 * 119.99964 * 179.97438 * 7 5 3
10 10 H 1.48500 * 109.46861 * 60.00684 * 9 7 5
11 11 H 1.48502 * 109.47068 * 180.02562 * 9 7 5
12 12 H 1.48493 * 109.47445 * 300.00397 * 9 7 5
13 13 N 1.46900 * 109.47034 * 294.87052 * 3 2 1
14 14 C 1.46897 * 111.00386 * 151.97317 * 13 3 2
15 15 H 1.08999 * 109.46644 * 326.82469 * 14 13 3
16 16 C 1.52999 * 109.47084 * 86.82248 * 14 13 3
17 17 C 1.53002 * 109.47483 * 206.82685 * 14 13 3
18 18 C 1.53779 * 113.61618 * 162.55871 * 17 14 13
19 19 C 1.53955 * 87.01788 * 220.05017 * 18 17 14
20 20 C 1.53776 * 113.61211 * 64.95090 * 17 14 13
21 21 H 1.08996 * 109.46905 * 65.59644 * 1 2 3
22 22 H 1.09005 * 109.46764 * 185.59781 * 1 2 3
23 23 H 1.09004 * 109.46816 * 305.59045 * 1 2 3
24 24 H 1.08999 * 109.46913 * 240.00051 * 2 1 3
25 25 H 1.09005 * 109.47110 * 119.99965 * 2 1 3
26 26 H 0.96996 * 120.00094 * 180.02562 * 8 7 5
27 27 H 1.00906 * 110.99946 * 28.01501 * 13 3 2
28 28 H 1.08997 * 109.47000 * 176.52736 * 16 14 13
29 29 H 1.08999 * 109.47336 * 296.52939 * 16 14 13
30 30 H 1.08999 * 109.47035 * 56.53223 * 16 14 13
31 31 H 1.09001 * 112.84521 * 293.75774 * 17 14 13
32 32 H 1.09007 * 113.60819 * 334.56805 * 18 17 14
33 33 H 1.08995 * 113.61267 * 105.46726 * 18 17 14
34 34 H 1.09001 * 113.53026 * 270.80856 * 19 18 17
35 35 H 1.08998 * 113.73822 * 139.94767 * 19 18 17
36 36 H 1.09011 * 113.61309 * 254.52897 * 20 17 14
37 37 H 1.09001 * 113.61715 * 25.43217 * 20 17 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6036 1.9822 0.8405
5 6 3.5416 1.4444 0.1270
6 1 4.1485 1.8884 -0.6482
7 6 4.1406 0.8794 1.2329
8 7 3.4016 0.3384 2.1767
9 14 6.0020 0.8811 1.3900
10 1 6.4975 2.2810 1.3897
11 1 6.3922 0.2178 2.6601
12 1 6.5961 0.1454 0.2451
13 7 1.6541 2.0983 -1.2566
14 6 1.5050 3.5477 -1.0698
15 1 1.1341 3.7482 -0.0647
16 6 2.8622 4.2284 -1.2579
17 6 0.5130 4.0951 -2.0981
18 6 -0.0404 5.4848 -1.7411
19 6 -1.4046 4.9834 -2.2488
20 6 -0.9183 3.5627 -1.9173
21 1 -0.3633 0.4246 -0.9358
22 1 -0.3633 -1.0228 0.1002
23 1 -0.3633 0.5981 0.8357
24 1 1.8933 -0.5138 -0.8900
25 1 1.8934 -0.5138 0.8900
26 1 3.8230 -0.0588 2.9549
27 1 0.8093 1.6932 -1.6313
28 1 2.7406 5.3088 -1.1805
29 1 3.5513 3.8841 -0.4868
30 1 3.2616 3.9773 -2.2405
31 1 0.8804 4.0211 -3.1216
32 1 -0.0243 5.6998 -0.6726
33 1 0.3812 6.2902 -2.3424
34 1 -1.5619 5.1536 -3.3139
35 1 -2.2468 5.3101 -1.6389
36 1 -1.2046 2.8186 -2.6607
37 1 -1.1427 3.2513 -0.8971
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000124056634.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:27:34
Heat of formation + Delta-G solvation = 0.643799 kcal
Electronic energy + Delta-G solvation = -14828.550468 eV
Core-core repulsion = 12605.691371 eV
Total energy + Delta-G solvation = -2222.859097 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 211.163 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-38.97795 -35.98944 -32.73859 -31.48579 -28.45870 -26.63280 -25.14786 -24.82499
-22.67992 -20.35911 -19.53533 -18.92358 -16.23881 -15.42240 -15.11411 -14.63066
-14.05827 -13.62725 -12.68661 -12.63078 -12.57981 -12.23429 -11.93736 -11.76095
-11.42775 -11.05971 -10.99808 -10.81994 -10.65738 -10.61083 -10.27139 -10.15185
-9.92980 -9.67367 -9.56336 -9.23047 -8.91801 -8.27306 -7.11816 -5.90206
-3.92941 3.37369 3.41408 3.44957 4.49337 4.81602 4.88217 4.97289
5.09600 5.37657 5.57046 5.72375 5.85821 5.95475 5.96749 6.03816
6.10882 6.19216 6.20661 6.26372 6.34960 6.45123 6.53286 6.61831
6.73666 6.88994 6.94888 7.13486 7.20318 7.30010 7.59127 7.84968
8.01008 8.43912 8.50265 8.88285 9.14782 9.71082 11.15200
Molecular weight = 211.16amu
Principal moments of inertia in cm(-1)
A = 0.035960 B = 0.009158 C = 0.007708
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 778.453237 B = 3056.587870 C = 3631.928111
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.128 4.128
3 C 0.219 3.781
4 H 0.001 0.999
5 C -0.487 4.487
6 H 0.063 0.937
7 C 0.052 3.948
8 N -0.898 5.898
9 Si 0.893 3.107
10 H -0.279 1.279
11 H -0.290 1.290
12 H -0.278 1.278
13 N -0.683 5.683
14 C 0.105 3.895
15 H 0.033 0.967
16 C -0.135 4.135
17 C -0.110 4.110
18 C -0.134 4.134
19 C -0.142 4.142
20 C -0.140 4.140
21 H 0.035 0.965
22 H 0.036 0.964
23 H 0.041 0.959
24 H 0.040 0.960
25 H 0.099 0.901
26 H 0.258 0.742
27 H 0.317 0.683
28 H 0.034 0.966
29 H 0.072 0.928
30 H 0.049 0.951
31 H 0.089 0.911
32 H 0.078 0.922
33 H 0.062 0.938
34 H 0.075 0.925
35 H 0.061 0.939
36 H 0.064 0.936
37 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.119 6.230 -6.154 11.286
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.166 4.166
3 C 0.112 3.888
4 H 0.019 0.981
5 C -0.526 4.526
6 H 0.082 0.918
7 C -0.147 4.147
8 N -0.539 5.539
9 Si 0.721 3.279
10 H -0.205 1.205
11 H -0.216 1.216
12 H -0.204 1.204
13 N -0.315 5.315
14 C -0.005 4.005
15 H 0.051 0.949
16 C -0.193 4.193
17 C -0.128 4.128
18 C -0.172 4.172
19 C -0.179 4.179
20 C -0.178 4.178
21 H 0.054 0.946
22 H 0.055 0.945
23 H 0.060 0.940
24 H 0.058 0.942
25 H 0.117 0.883
26 H 0.068 0.932
27 H 0.135 0.865
28 H 0.053 0.947
29 H 0.091 0.909
30 H 0.068 0.932
31 H 0.107 0.893
32 H 0.097 0.903
33 H 0.081 0.919
34 H 0.094 0.906
35 H 0.080 0.920
36 H 0.082 0.918
37 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -6.439 6.174 -6.197 10.862
hybrid contribution 0.162 -0.051 0.687 0.708
sum -6.277 6.123 -5.510 10.356
Atomic orbital electron populations
1.21881 0.99707 0.99586 0.99500 1.21799 0.91152 1.00682 1.02979
1.19217 0.95384 0.89759 0.84438 0.98139 1.21251 0.91331 1.35747
1.04233 0.91843 1.24973 0.97903 0.95856 0.96004 1.69864 1.34681
1.39640 1.09696 0.86650 0.86109 0.78082 0.77059 1.20479 1.21557
1.20386 1.60740 1.37327 1.01318 1.32091 1.21363 0.94180 0.89880
0.95125 0.94936 1.21798 0.97866 0.97030 1.02629 1.22781 0.94153
0.95493 1.00415 1.22935 0.96147 0.97006 1.01145 1.22821 0.97160
0.97253 1.00699 1.22927 0.96861 0.96310 1.01701 0.94610 0.94489
0.93993 0.94155 0.88331 0.93165 0.86458 0.94728 0.90857 0.93212
0.89311 0.90320 0.91921 0.90639 0.92010 0.91772 0.90371
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.93 9.65 37.16 0.36 -2.57 16
2 C -0.13 -3.04 5.34 -26.73 -0.14 -3.18 16
3 C 0.22 5.49 2.03 -68.87 -0.14 5.35 16
4 H 0.00 0.03 7.35 -51.93 -0.38 -0.35 16
5 C -0.49 -13.39 7.41 -34.44 -0.26 -13.65 16
6 H 0.06 1.77 6.95 -52.49 -0.36 1.40 16
7 C 0.05 1.46 5.29 -17.82 -0.09 1.37 16
8 N -0.90 -25.77 11.29 55.43 0.63 -25.15 16
9 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16
10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
13 N -0.68 -14.58 6.16 -100.96 -0.62 -15.21 16
14 C 0.10 1.99 2.35 -67.71 -0.16 1.83 16
15 H 0.03 0.68 7.27 -51.93 -0.38 0.30 16
16 C -0.14 -2.58 8.92 37.16 0.33 -2.25 16
17 C -0.11 -1.66 3.19 -89.81 -0.29 -1.94 16
18 C -0.13 -1.75 7.44 -25.83 -0.19 -1.94 16
19 C -0.14 -1.67 8.09 -25.83 -0.21 -1.88 16
20 C -0.14 -1.93 6.75 -25.92 -0.18 -2.11 16
21 H 0.03 0.63 6.63 -51.93 -0.34 0.28 16
22 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16
23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16
24 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16
25 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16
26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
27 H 0.32 6.26 5.37 -39.29 -0.21 6.05 16
28 H 0.03 0.56 7.98 -51.93 -0.41 0.15 16
29 H 0.07 1.61 6.32 -51.93 -0.33 1.28 16
30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16
31 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16
32 H 0.08 1.06 8.04 -51.93 -0.42 0.64 16
33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
36 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16
37 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16
LS Contribution 286.33 15.07 4.31 4.31
Total: -1.00 -27.83 286.33 -8.17 -36.00
By element:
Atomic # 1 Polarization: 10.86 SS G_CDS: -6.51 Total: 4.35 kcal
Atomic # 6 Polarization: -20.03 SS G_CDS: -0.96 Total: -20.99 kcal
Atomic # 7 Polarization: -40.36 SS G_CDS: 0.00 Total: -40.36 kcal
Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal
Total LS contribution 4.31 Total: 4.31 kcal
Total: -27.83 -8.17 -36.00 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000124056634.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.647 kcal
(2) G-P(sol) polarization free energy of solvation -27.829 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.818 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.003 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.644 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds