Wall clock time and date at job start Sun Mar 29 2020 21:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47119 * 2 1 4 4 H 1.09002 * 109.47338 * 54.86811 * 3 2 1 5 5 C 1.50695 * 109.47016 * 174.87065 * 3 2 1 6 6 H 1.08002 * 119.99853 * 120.00132 * 5 3 2 7 7 C 1.37878 * 120.00071 * 299.99450 * 5 3 2 8 8 N 1.31514 * 120.00089 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99964 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46861 * 60.00684 * 9 7 5 11 11 H 1.48502 * 109.47068 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47445 * 300.00397 * 9 7 5 13 13 N 1.46900 * 109.47034 * 294.87052 * 3 2 1 14 14 C 1.46897 * 111.00386 * 151.97317 * 13 3 2 15 15 H 1.08999 * 109.46644 * 326.82469 * 14 13 3 16 16 C 1.52999 * 109.47084 * 86.82248 * 14 13 3 17 17 C 1.53002 * 109.47483 * 206.82685 * 14 13 3 18 18 C 1.53779 * 113.61618 * 162.55871 * 17 14 13 19 19 C 1.53955 * 87.01788 * 220.05017 * 18 17 14 20 20 C 1.53776 * 113.61211 * 64.95090 * 17 14 13 21 21 H 1.08996 * 109.46905 * 65.59644 * 1 2 3 22 22 H 1.09005 * 109.46764 * 185.59781 * 1 2 3 23 23 H 1.09004 * 109.46816 * 305.59045 * 1 2 3 24 24 H 1.08999 * 109.46913 * 240.00051 * 2 1 3 25 25 H 1.09005 * 109.47110 * 119.99965 * 2 1 3 26 26 H 0.96996 * 120.00094 * 180.02562 * 8 7 5 27 27 H 1.00906 * 110.99946 * 28.01501 * 13 3 2 28 28 H 1.08997 * 109.47000 * 176.52736 * 16 14 13 29 29 H 1.08999 * 109.47336 * 296.52939 * 16 14 13 30 30 H 1.08999 * 109.47035 * 56.53223 * 16 14 13 31 31 H 1.09001 * 112.84521 * 293.75774 * 17 14 13 32 32 H 1.09007 * 113.60819 * 334.56805 * 18 17 14 33 33 H 1.08995 * 113.61267 * 105.46726 * 18 17 14 34 34 H 1.09001 * 113.53026 * 270.80856 * 19 18 17 35 35 H 1.08998 * 113.73822 * 139.94767 * 19 18 17 36 36 H 1.09011 * 113.61309 * 254.52897 * 20 17 14 37 37 H 1.09001 * 113.61715 * 25.43217 * 20 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6036 1.9822 0.8405 5 6 3.5416 1.4444 0.1270 6 1 4.1485 1.8884 -0.6482 7 6 4.1406 0.8794 1.2329 8 7 3.4016 0.3384 2.1767 9 14 6.0020 0.8811 1.3900 10 1 6.4975 2.2810 1.3897 11 1 6.3922 0.2178 2.6601 12 1 6.5961 0.1454 0.2451 13 7 1.6541 2.0983 -1.2566 14 6 1.5050 3.5477 -1.0698 15 1 1.1341 3.7482 -0.0647 16 6 2.8622 4.2284 -1.2579 17 6 0.5130 4.0951 -2.0981 18 6 -0.0404 5.4848 -1.7411 19 6 -1.4046 4.9834 -2.2488 20 6 -0.9183 3.5627 -1.9173 21 1 -0.3633 0.4246 -0.9358 22 1 -0.3633 -1.0228 0.1002 23 1 -0.3633 0.5981 0.8357 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8230 -0.0588 2.9549 27 1 0.8093 1.6932 -1.6313 28 1 2.7406 5.3088 -1.1805 29 1 3.5513 3.8841 -0.4868 30 1 3.2616 3.9773 -2.2405 31 1 0.8804 4.0211 -3.1216 32 1 -0.0243 5.6998 -0.6726 33 1 0.3812 6.2902 -2.3424 34 1 -1.5619 5.1536 -3.3139 35 1 -2.2468 5.3101 -1.6389 36 1 -1.2046 2.8186 -2.6607 37 1 -1.1427 3.2513 -0.8971 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124056634.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:34 Heat of formation + Delta-G solvation = 0.643799 kcal Electronic energy + Delta-G solvation = -14828.550468 eV Core-core repulsion = 12605.691371 eV Total energy + Delta-G solvation = -2222.859097 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.97795 -35.98944 -32.73859 -31.48579 -28.45870 -26.63280 -25.14786 -24.82499 -22.67992 -20.35911 -19.53533 -18.92358 -16.23881 -15.42240 -15.11411 -14.63066 -14.05827 -13.62725 -12.68661 -12.63078 -12.57981 -12.23429 -11.93736 -11.76095 -11.42775 -11.05971 -10.99808 -10.81994 -10.65738 -10.61083 -10.27139 -10.15185 -9.92980 -9.67367 -9.56336 -9.23047 -8.91801 -8.27306 -7.11816 -5.90206 -3.92941 3.37369 3.41408 3.44957 4.49337 4.81602 4.88217 4.97289 5.09600 5.37657 5.57046 5.72375 5.85821 5.95475 5.96749 6.03816 6.10882 6.19216 6.20661 6.26372 6.34960 6.45123 6.53286 6.61831 6.73666 6.88994 6.94888 7.13486 7.20318 7.30010 7.59127 7.84968 8.01008 8.43912 8.50265 8.88285 9.14782 9.71082 11.15200 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035960 B = 0.009158 C = 0.007708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.453237 B = 3056.587870 C = 3631.928111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.487 4.487 6 H 0.063 0.937 7 C 0.052 3.948 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.683 5.683 14 C 0.105 3.895 15 H 0.033 0.967 16 C -0.135 4.135 17 C -0.110 4.110 18 C -0.134 4.134 19 C -0.142 4.142 20 C -0.140 4.140 21 H 0.035 0.965 22 H 0.036 0.964 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.099 0.901 26 H 0.258 0.742 27 H 0.317 0.683 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.119 6.230 -6.154 11.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.526 4.526 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.315 5.315 14 C -0.005 4.005 15 H 0.051 0.949 16 C -0.193 4.193 17 C -0.128 4.128 18 C -0.172 4.172 19 C -0.179 4.179 20 C -0.178 4.178 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.117 0.883 26 H 0.068 0.932 27 H 0.135 0.865 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.439 6.174 -6.197 10.862 hybrid contribution 0.162 -0.051 0.687 0.708 sum -6.277 6.123 -5.510 10.356 Atomic orbital electron populations 1.21881 0.99707 0.99586 0.99500 1.21799 0.91152 1.00682 1.02979 1.19217 0.95384 0.89759 0.84438 0.98139 1.21251 0.91331 1.35747 1.04233 0.91843 1.24973 0.97903 0.95856 0.96004 1.69864 1.34681 1.39640 1.09696 0.86650 0.86109 0.78082 0.77059 1.20479 1.21557 1.20386 1.60740 1.37327 1.01318 1.32091 1.21363 0.94180 0.89880 0.95125 0.94936 1.21798 0.97866 0.97030 1.02629 1.22781 0.94153 0.95493 1.00415 1.22935 0.96147 0.97006 1.01145 1.22821 0.97160 0.97253 1.00699 1.22927 0.96861 0.96310 1.01701 0.94610 0.94489 0.93993 0.94155 0.88331 0.93165 0.86458 0.94728 0.90857 0.93212 0.89311 0.90320 0.91921 0.90639 0.92010 0.91772 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.65 37.16 0.36 -2.57 16 2 C -0.13 -3.04 5.34 -26.73 -0.14 -3.18 16 3 C 0.22 5.49 2.03 -68.87 -0.14 5.35 16 4 H 0.00 0.03 7.35 -51.93 -0.38 -0.35 16 5 C -0.49 -13.39 7.41 -34.44 -0.26 -13.65 16 6 H 0.06 1.77 6.95 -52.49 -0.36 1.40 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.37 16 8 N -0.90 -25.77 11.29 55.43 0.63 -25.15 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.68 -14.58 6.16 -100.96 -0.62 -15.21 16 14 C 0.10 1.99 2.35 -67.71 -0.16 1.83 16 15 H 0.03 0.68 7.27 -51.93 -0.38 0.30 16 16 C -0.14 -2.58 8.92 37.16 0.33 -2.25 16 17 C -0.11 -1.66 3.19 -89.81 -0.29 -1.94 16 18 C -0.13 -1.75 7.44 -25.83 -0.19 -1.94 16 19 C -0.14 -1.67 8.09 -25.83 -0.21 -1.88 16 20 C -0.14 -1.93 6.75 -25.92 -0.18 -2.11 16 21 H 0.03 0.63 6.63 -51.93 -0.34 0.28 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.32 6.26 5.37 -39.29 -0.21 6.05 16 28 H 0.03 0.56 7.98 -51.93 -0.41 0.15 16 29 H 0.07 1.61 6.32 -51.93 -0.33 1.28 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.08 1.06 8.04 -51.93 -0.42 0.64 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 37 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 LS Contribution 286.33 15.07 4.31 4.31 Total: -1.00 -27.83 286.33 -8.17 -36.00 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.51 Total: 4.35 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -0.96 Total: -20.99 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.00 Total: -40.36 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.83 -8.17 -36.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124056634.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.647 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds