Wall clock time and date at job start Sun Mar 29 2020 21:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47119 * 2 1 4 4 H 1.09002 * 109.47338 * 54.86811 * 3 2 1 5 5 C 1.50695 * 109.47016 * 174.87065 * 3 2 1 6 6 H 1.08002 * 119.99853 * 120.00132 * 5 3 2 7 7 C 1.37878 * 120.00071 * 299.99450 * 5 3 2 8 8 N 1.31514 * 120.00089 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99964 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46861 * 60.00684 * 9 7 5 11 11 H 1.48502 * 109.47068 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47445 * 300.00397 * 9 7 5 13 13 N 1.46900 * 109.47034 * 294.87052 * 3 2 1 14 14 C 1.46897 * 111.00386 * 151.97317 * 13 3 2 15 15 H 1.08999 * 109.46644 * 326.82469 * 14 13 3 16 16 C 1.52999 * 109.47084 * 86.82248 * 14 13 3 17 17 C 1.53002 * 109.47483 * 206.82685 * 14 13 3 18 18 C 1.53779 * 113.61618 * 162.55871 * 17 14 13 19 19 C 1.53955 * 87.01788 * 220.05017 * 18 17 14 20 20 C 1.53776 * 113.61211 * 64.95090 * 17 14 13 21 21 H 1.08996 * 109.46905 * 65.59644 * 1 2 3 22 22 H 1.09005 * 109.46764 * 185.59781 * 1 2 3 23 23 H 1.09004 * 109.46816 * 305.59045 * 1 2 3 24 24 H 1.08999 * 109.46913 * 240.00051 * 2 1 3 25 25 H 1.09005 * 109.47110 * 119.99965 * 2 1 3 26 26 H 0.96996 * 120.00094 * 180.02562 * 8 7 5 27 27 H 1.00906 * 110.99946 * 28.01501 * 13 3 2 28 28 H 1.08997 * 109.47000 * 176.52736 * 16 14 13 29 29 H 1.08999 * 109.47336 * 296.52939 * 16 14 13 30 30 H 1.08999 * 109.47035 * 56.53223 * 16 14 13 31 31 H 1.09001 * 112.84521 * 293.75774 * 17 14 13 32 32 H 1.09007 * 113.60819 * 334.56805 * 18 17 14 33 33 H 1.08995 * 113.61267 * 105.46726 * 18 17 14 34 34 H 1.09001 * 113.53026 * 270.80856 * 19 18 17 35 35 H 1.08998 * 113.73822 * 139.94767 * 19 18 17 36 36 H 1.09011 * 113.61309 * 254.52897 * 20 17 14 37 37 H 1.09001 * 113.61715 * 25.43217 * 20 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6036 1.9822 0.8405 5 6 3.5416 1.4444 0.1270 6 1 4.1485 1.8884 -0.6482 7 6 4.1406 0.8794 1.2329 8 7 3.4016 0.3384 2.1767 9 14 6.0020 0.8811 1.3900 10 1 6.4975 2.2810 1.3897 11 1 6.3922 0.2178 2.6601 12 1 6.5961 0.1454 0.2451 13 7 1.6541 2.0983 -1.2566 14 6 1.5050 3.5477 -1.0698 15 1 1.1341 3.7482 -0.0647 16 6 2.8622 4.2284 -1.2579 17 6 0.5130 4.0951 -2.0981 18 6 -0.0404 5.4848 -1.7411 19 6 -1.4046 4.9834 -2.2488 20 6 -0.9183 3.5627 -1.9173 21 1 -0.3633 0.4246 -0.9358 22 1 -0.3633 -1.0228 0.1002 23 1 -0.3633 0.5981 0.8357 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8230 -0.0588 2.9549 27 1 0.8093 1.6932 -1.6313 28 1 2.7406 5.3088 -1.1805 29 1 3.5513 3.8841 -0.4868 30 1 3.2616 3.9773 -2.2405 31 1 0.8804 4.0211 -3.1216 32 1 -0.0243 5.6998 -0.6726 33 1 0.3812 6.2902 -2.3424 34 1 -1.5619 5.1536 -3.3139 35 1 -2.2468 5.3101 -1.6389 36 1 -1.2046 2.8186 -2.6607 37 1 -1.1427 3.2513 -0.8971 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124056634.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:33 Heat of formation + Delta-G solvation = -15.415782 kcal Electronic energy + Delta-G solvation = -14829.246864 eV Core-core repulsion = 12605.691371 eV Total energy + Delta-G solvation = -2223.555493 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.22941 -37.71028 -34.56754 -33.36244 -30.12800 -28.50954 -26.36228 -26.08806 -24.55699 -21.80159 -21.38329 -20.16049 -18.33664 -16.82151 -16.76602 -16.16415 -15.66739 -15.35538 -14.53573 -14.20383 -14.08787 -13.49499 -13.30870 -13.29853 -13.01976 -12.82905 -12.62304 -12.50443 -12.43465 -12.13383 -11.91545 -11.67713 -11.51688 -11.28512 -11.00510 -10.97248 -10.64555 -10.38857 -8.94664 -8.03183 -6.13362 1.41385 1.42747 1.50252 2.45266 3.21013 3.54188 3.79991 3.84754 4.00559 4.15284 4.45167 4.51383 4.53036 4.57116 4.71831 4.80796 4.88802 4.90370 4.98134 5.02178 5.10274 5.11252 5.17427 5.24105 5.28824 5.40190 5.42986 5.56546 5.62154 5.72761 5.80539 5.94832 6.41738 6.61910 7.00373 7.10003 7.54665 8.99933 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035960 B = 0.009158 C = 0.007708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.453237 B = 3056.587870 C = 3631.928111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 C 0.227 3.773 4 H -0.036 1.036 5 C -0.501 4.501 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.923 5.923 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.682 5.682 14 C 0.104 3.896 15 H 0.009 0.991 16 C -0.129 4.129 17 C -0.110 4.110 18 C -0.132 4.132 19 C -0.127 4.127 20 C -0.144 4.144 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.034 0.966 24 H 0.036 0.964 25 H 0.067 0.933 26 H 0.258 0.742 27 H 0.328 0.672 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.853 7.018 -7.642 13.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.163 4.163 3 C 0.119 3.881 4 H -0.019 1.019 5 C -0.540 4.540 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.564 5.564 9 Si 0.778 3.222 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.314 5.314 14 C -0.006 4.006 15 H 0.027 0.973 16 C -0.187 4.187 17 C -0.129 4.129 18 C -0.170 4.170 19 C -0.164 4.164 20 C -0.181 4.181 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.147 0.853 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.183 6.969 -7.699 12.627 hybrid contribution 0.392 -0.273 1.144 1.240 sum -6.792 6.696 -6.555 11.573 Atomic orbital electron populations 1.21739 0.96334 1.01029 1.00389 1.21633 0.94206 0.99293 1.01123 1.18971 0.94075 0.90370 0.84696 1.01893 1.21507 0.92773 1.35546 1.04124 0.92764 1.25692 1.02065 0.95660 0.95799 1.70000 1.36182 1.40192 1.10016 0.85708 0.81177 0.78159 0.77140 1.20052 1.21079 1.19875 1.60645 1.38058 1.02755 1.29990 1.21412 0.95304 0.88519 0.95414 0.97348 1.21717 0.97054 0.98674 1.01284 1.22760 0.93669 0.97230 0.99240 1.22929 0.96929 0.96104 1.01042 1.22777 0.96640 0.94966 1.02005 1.22930 0.95928 0.98094 1.01183 0.92367 0.92423 0.94730 0.94550 0.91501 0.93263 0.85341 0.92058 0.94542 0.92946 0.88601 0.91196 0.90305 0.88720 0.90895 0.90788 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 9.65 71.98 0.69 -4.58 16 2 C -0.12 -5.98 5.34 30.59 0.16 -5.82 16 3 C 0.23 11.67 2.03 44.17 0.09 11.76 16 4 H -0.04 -2.11 7.35 -2.39 -0.02 -2.13 16 5 C -0.50 -28.26 7.41 25.60 0.19 -28.07 16 6 H 0.05 3.09 6.95 -2.91 -0.02 3.07 16 7 C 0.01 0.30 5.29 84.65 0.45 0.75 16 8 N -0.92 -54.30 11.29 21.45 0.24 -54.05 16 9 Si 0.95 45.11 29.54 68.60 2.03 47.14 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 13 N -0.68 -29.22 6.16 -473.32 -2.92 -32.13 16 14 C 0.10 3.92 2.35 44.92 0.11 4.03 16 15 H 0.01 0.37 7.27 -2.39 -0.02 0.35 16 16 C -0.13 -4.91 8.92 71.98 0.64 -4.27 16 17 C -0.11 -3.13 3.19 -10.27 -0.03 -3.16 16 18 C -0.13 -3.11 7.44 31.18 0.23 -2.88 16 19 C -0.13 -2.56 8.09 31.18 0.25 -2.31 16 20 C -0.14 -3.64 6.75 31.12 0.21 -3.43 16 21 H 0.06 1.95 6.63 -2.39 -0.02 1.94 16 22 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 23 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.07 3.67 5.95 -2.38 -0.01 3.66 16 26 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.33 12.64 5.37 -89.69 -0.48 12.15 16 28 H 0.06 1.95 7.98 -2.39 -0.02 1.93 16 29 H 0.04 1.63 6.32 -2.39 -0.02 1.61 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.07 1.77 8.04 -2.38 -0.02 1.76 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.06 1.78 8.10 -2.39 -0.02 1.77 16 Total: -1.00 -60.85 286.33 2.88 -57.97 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.54 Total: 19.07 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 2.99 Total: -37.99 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -2.67 Total: -86.19 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -60.85 2.88 -57.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124056634.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.555 kcal (2) G-P(sol) polarization free energy of solvation -60.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds