Wall clock time and date at job start Sun Mar 29 2020 21:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47433 * 2 1 4 4 H 1.09002 * 109.46789 * 54.55868 * 3 2 1 5 5 C 1.50697 * 109.47471 * 174.56007 * 3 2 1 6 6 H 1.07998 * 119.99960 * 119.99599 * 5 3 2 7 7 C 1.37875 * 120.00089 * 300.00441 * 5 3 2 8 8 N 1.31517 * 119.99865 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00069 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47676 * 59.99655 * 9 7 5 11 11 H 1.48501 * 109.47235 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46910 * 299.99277 * 9 7 5 13 13 N 1.46907 * 109.46859 * 294.56188 * 3 2 1 14 14 C 1.46903 * 110.99537 * 153.33068 * 13 3 2 15 15 H 1.08998 * 109.47466 * 36.80524 * 14 13 3 16 16 C 1.53002 * 109.47188 * 276.79878 * 14 13 3 17 17 C 1.52997 * 109.46692 * 156.80383 * 14 13 3 18 18 C 1.53787 * 113.61270 * 180.66716 * 17 14 13 19 19 C 1.53785 * 87.07972 * 220.01670 * 18 17 14 20 20 C 1.53777 * 87.17231 * 25.38903 * 19 18 17 21 21 H 1.08993 * 109.47169 * 305.95710 * 1 2 3 22 22 H 1.09001 * 109.46747 * 65.96015 * 1 2 3 23 23 H 1.09003 * 109.46831 * 185.95638 * 1 2 3 24 24 H 1.09006 * 109.46991 * 239.99985 * 2 1 3 25 25 H 1.09001 * 109.46982 * 119.99971 * 2 1 3 26 26 H 0.96997 * 119.99766 * 180.02562 * 8 7 5 27 27 H 1.00892 * 111.00107 * 29.37700 * 13 3 2 28 28 H 1.08996 * 109.47255 * 307.79768 * 16 14 13 29 29 H 1.09004 * 109.46805 * 67.79716 * 16 14 13 30 30 H 1.08998 * 109.46900 * 187.79422 * 16 14 13 31 31 H 1.09000 * 112.90861 * 311.91410 * 17 14 13 32 32 H 1.08999 * 113.61317 * 105.47346 * 18 17 14 33 33 H 1.08997 * 113.61164 * 334.56345 * 18 17 14 34 34 H 1.09003 * 113.61400 * 139.97846 * 19 18 17 35 35 H 1.09002 * 113.61814 * 270.79793 * 19 18 17 36 36 H 1.08999 * 113.61281 * 89.15980 * 20 19 18 37 37 H 1.09001 * 113.61794 * 220.05851 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5993 1.9836 0.8373 5 6 3.5410 1.4446 0.1347 6 1 4.1519 1.8871 -0.6382 7 6 4.1344 0.8814 1.2445 8 7 3.3904 0.3429 2.1859 9 14 5.9948 0.8847 1.4118 10 1 6.4894 2.2849 1.4122 11 1 6.3785 0.2244 2.6854 12 1 6.5956 0.1478 0.2711 13 7 1.6605 2.0960 -1.2597 14 6 1.5420 3.5496 -1.0837 15 1 2.3096 3.8956 -0.3915 16 6 0.1592 3.8841 -0.5207 17 6 1.7238 4.2434 -2.4351 18 6 1.6334 5.7766 -2.3575 19 6 0.8469 5.7185 -3.6778 20 6 0.4404 4.2886 -3.2843 21 1 -0.3633 0.6034 0.8318 22 1 -0.3633 0.4187 -0.9386 23 1 -0.3633 -1.0222 0.1066 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8079 -0.0530 2.9668 27 1 0.8057 1.7053 -1.6265 28 1 -0.6076 3.4189 -1.1401 29 1 0.0810 3.5066 0.4989 30 1 0.0191 4.9650 -0.5196 31 1 2.5955 3.8846 -2.9824 32 1 2.5983 6.2759 -2.4458 33 1 1.0446 6.1371 -1.5141 34 1 0.0094 6.4150 -3.7182 35 1 1.4787 5.7644 -4.5649 36 1 -0.4751 4.2415 -2.6948 37 1 0.4436 3.5882 -4.1196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124057085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:37 Heat of formation + Delta-G solvation = 4.552262 kcal Electronic energy + Delta-G solvation = -14775.793075 eV Core-core repulsion = 12553.103461 eV Total energy + Delta-G solvation = -2222.689614 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.07626 -36.06457 -32.77621 -31.34892 -28.47067 -26.08112 -25.55025 -25.05710 -22.75882 -20.83662 -19.50738 -18.19915 -16.14716 -15.63385 -14.93307 -14.57392 -14.06622 -13.91386 -13.05932 -12.80626 -12.49427 -12.26295 -11.90546 -11.60821 -11.41490 -11.12004 -11.01359 -10.83808 -10.67837 -10.60750 -10.26128 -10.02352 -9.89322 -9.68264 -9.60990 -9.19651 -9.00659 -8.29277 -7.08560 -5.91162 -3.94854 3.37220 3.41055 3.44795 4.49079 4.91697 4.98017 5.08179 5.18821 5.36960 5.59146 5.70613 5.80231 5.89704 5.98547 6.10148 6.10527 6.18588 6.20327 6.22165 6.24229 6.43759 6.46159 6.57400 6.67121 6.85573 6.89176 6.94603 7.16286 7.27038 7.60452 7.84656 7.99132 8.42525 8.49223 8.87569 9.13598 9.69935 11.14041 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030756 B = 0.009228 C = 0.007671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.177395 B = 3033.656962 C = 3649.183662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.003 0.997 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.099 3.901 15 H 0.080 0.920 16 C -0.180 4.180 17 C -0.091 4.091 18 C -0.142 4.142 19 C -0.142 4.142 20 C -0.143 4.143 21 H 0.041 0.959 22 H 0.034 0.966 23 H 0.036 0.964 24 H 0.039 0.961 25 H 0.098 0.902 26 H 0.259 0.741 27 H 0.316 0.684 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.944 6.695 -6.933 11.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.529 4.529 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.310 5.310 14 C -0.012 4.012 15 H 0.099 0.901 16 C -0.239 4.239 17 C -0.110 4.110 18 C -0.179 4.179 19 C -0.180 4.180 20 C -0.180 4.180 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.116 0.884 26 H 0.069 0.931 27 H 0.133 0.867 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.261 6.614 -6.978 10.959 hybrid contribution 0.137 -0.002 0.704 0.717 sum -5.124 6.612 -6.274 10.456 Atomic orbital electron populations 1.21874 0.99686 0.99571 0.99484 1.21780 0.91163 1.00636 1.02946 1.19154 0.95182 0.89785 0.84741 0.97960 1.21215 0.91443 1.36136 1.04148 0.92187 1.24960 0.97977 0.95783 0.95916 1.69866 1.34684 1.39663 1.09606 0.86629 0.85987 0.78090 0.77060 1.20478 1.21523 1.20370 1.60752 1.36724 1.01475 1.32081 1.21316 0.95066 0.90037 0.94817 0.90143 1.22627 0.99217 1.00832 1.01189 1.22568 0.97938 0.93692 0.96781 1.23014 1.00054 0.97414 0.97459 1.22785 0.99790 0.97664 0.97751 1.23096 0.98953 0.96175 0.99819 0.93966 0.94650 0.94518 0.94172 0.88366 0.93130 0.86668 0.93104 0.92911 0.93041 0.89004 0.92043 0.90287 0.92337 0.90770 0.90029 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.64 37.16 0.36 -2.56 16 2 C -0.13 -3.02 5.35 -26.73 -0.14 -3.16 16 3 C 0.22 5.45 1.83 -68.86 -0.13 5.32 16 4 H 0.00 0.08 7.06 -51.93 -0.37 -0.29 16 5 C -0.49 -13.65 8.58 -34.44 -0.30 -13.95 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.79 11.29 55.43 0.63 -25.16 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 N -0.68 -14.41 6.04 -100.95 -0.61 -15.02 16 14 C 0.10 1.84 2.55 -67.71 -0.17 1.67 16 15 H 0.08 1.73 7.72 -51.93 -0.40 1.33 16 16 C -0.18 -2.94 7.98 37.16 0.30 -2.65 16 17 C -0.09 -1.44 3.90 -89.72 -0.35 -1.79 16 18 C -0.14 -1.91 7.45 -25.91 -0.19 -2.10 16 19 C -0.14 -1.72 8.08 -25.92 -0.21 -1.93 16 20 C -0.14 -1.94 7.34 -25.83 -0.19 -2.13 16 21 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.03 0.62 6.66 -51.93 -0.35 0.28 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.32 6.21 6.25 -39.30 -0.25 5.97 16 28 H 0.05 0.77 6.47 -51.93 -0.34 0.43 16 29 H 0.05 0.95 7.44 -51.93 -0.39 0.56 16 30 H 0.05 0.74 6.25 -51.93 -0.32 0.42 16 31 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.04 6.35 -51.93 -0.33 0.71 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.08 5.64 -51.93 -0.29 0.79 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 283.21 15.07 4.27 4.27 Total: -1.00 -27.82 283.21 -8.12 -35.94 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.26 Total: 5.10 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -1.12 Total: -21.87 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.02 Total: -40.18 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.82 -8.12 -35.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124057085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.488 kcal (2) G-P(sol) polarization free energy of solvation -27.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds