Wall clock time and date at job start Sun Mar 29 2020 21:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47433 * 2 1 4 4 H 1.09002 * 109.46789 * 54.55868 * 3 2 1 5 5 C 1.50697 * 109.47471 * 174.56007 * 3 2 1 6 6 H 1.07998 * 119.99960 * 119.99599 * 5 3 2 7 7 C 1.37875 * 120.00089 * 300.00441 * 5 3 2 8 8 N 1.31517 * 119.99865 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00069 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47676 * 59.99655 * 9 7 5 11 11 H 1.48501 * 109.47235 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46910 * 299.99277 * 9 7 5 13 13 N 1.46907 * 109.46859 * 294.56188 * 3 2 1 14 14 C 1.46903 * 110.99537 * 153.33068 * 13 3 2 15 15 H 1.08998 * 109.47466 * 36.80524 * 14 13 3 16 16 C 1.53002 * 109.47188 * 276.79878 * 14 13 3 17 17 C 1.52997 * 109.46692 * 156.80383 * 14 13 3 18 18 C 1.53787 * 113.61270 * 180.66716 * 17 14 13 19 19 C 1.53785 * 87.07972 * 220.01670 * 18 17 14 20 20 C 1.53777 * 87.17231 * 25.38903 * 19 18 17 21 21 H 1.08993 * 109.47169 * 305.95710 * 1 2 3 22 22 H 1.09001 * 109.46747 * 65.96015 * 1 2 3 23 23 H 1.09003 * 109.46831 * 185.95638 * 1 2 3 24 24 H 1.09006 * 109.46991 * 239.99985 * 2 1 3 25 25 H 1.09001 * 109.46982 * 119.99971 * 2 1 3 26 26 H 0.96997 * 119.99766 * 180.02562 * 8 7 5 27 27 H 1.00892 * 111.00107 * 29.37700 * 13 3 2 28 28 H 1.08996 * 109.47255 * 307.79768 * 16 14 13 29 29 H 1.09004 * 109.46805 * 67.79716 * 16 14 13 30 30 H 1.08998 * 109.46900 * 187.79422 * 16 14 13 31 31 H 1.09000 * 112.90861 * 311.91410 * 17 14 13 32 32 H 1.08999 * 113.61317 * 105.47346 * 18 17 14 33 33 H 1.08997 * 113.61164 * 334.56345 * 18 17 14 34 34 H 1.09003 * 113.61400 * 139.97846 * 19 18 17 35 35 H 1.09002 * 113.61814 * 270.79793 * 19 18 17 36 36 H 1.08999 * 113.61281 * 89.15980 * 20 19 18 37 37 H 1.09001 * 113.61794 * 220.05851 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5993 1.9836 0.8373 5 6 3.5410 1.4446 0.1347 6 1 4.1519 1.8871 -0.6382 7 6 4.1344 0.8814 1.2445 8 7 3.3904 0.3429 2.1859 9 14 5.9948 0.8847 1.4118 10 1 6.4894 2.2849 1.4122 11 1 6.3785 0.2244 2.6854 12 1 6.5956 0.1478 0.2711 13 7 1.6605 2.0960 -1.2597 14 6 1.5420 3.5496 -1.0837 15 1 2.3096 3.8956 -0.3915 16 6 0.1592 3.8841 -0.5207 17 6 1.7238 4.2434 -2.4351 18 6 1.6334 5.7766 -2.3575 19 6 0.8469 5.7185 -3.6778 20 6 0.4404 4.2886 -3.2843 21 1 -0.3633 0.6034 0.8318 22 1 -0.3633 0.4187 -0.9386 23 1 -0.3633 -1.0222 0.1066 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8079 -0.0530 2.9668 27 1 0.8057 1.7053 -1.6265 28 1 -0.6076 3.4189 -1.1401 29 1 0.0810 3.5066 0.4989 30 1 0.0191 4.9650 -0.5196 31 1 2.5955 3.8846 -2.9824 32 1 2.5983 6.2759 -2.4458 33 1 1.0446 6.1371 -1.5141 34 1 0.0094 6.4150 -3.7182 35 1 1.4787 5.7644 -4.5649 36 1 -0.4751 4.2415 -2.6948 37 1 0.4436 3.5882 -4.1196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124057085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:37 Heat of formation + Delta-G solvation = -11.635719 kcal Electronic energy + Delta-G solvation = -14776.495038 eV Core-core repulsion = 12553.103461 eV Total energy + Delta-G solvation = -2223.391577 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.34018 -37.78504 -34.62429 -33.18687 -30.11466 -27.99545 -26.73783 -26.26272 -24.60999 -22.16626 -21.44117 -19.42421 -18.28638 -16.93703 -16.80786 -15.90068 -15.80405 -15.45649 -14.66106 -14.48583 -13.98508 -13.61008 -13.46857 -13.18494 -12.96948 -12.77999 -12.57346 -12.52979 -12.28419 -12.01462 -11.94297 -11.81469 -11.50949 -11.23308 -10.99902 -10.90779 -10.63493 -10.41583 -8.86609 -8.05172 -6.17186 1.40368 1.41788 1.49623 2.43991 3.18935 3.59456 3.85434 3.96143 4.06392 4.23162 4.39394 4.49232 4.53258 4.55530 4.58441 4.71501 4.89776 4.95045 5.02703 5.04383 5.09629 5.16806 5.20093 5.23233 5.29168 5.37687 5.40436 5.55275 5.63785 5.75307 5.81673 5.93237 6.40310 6.62038 6.98054 7.11246 7.52080 8.97267 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030756 B = 0.009228 C = 0.007671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.177395 B = 3033.656962 C = 3649.183662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.227 3.773 4 H -0.030 1.030 5 C -0.511 4.511 6 H 0.046 0.954 7 C 0.008 3.992 8 N -0.920 5.920 9 Si 0.954 3.046 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.274 1.274 13 N -0.682 5.682 14 C 0.098 3.902 15 H 0.040 0.960 16 C -0.169 4.169 17 C -0.100 4.100 18 C -0.139 4.139 19 C -0.128 4.128 20 C -0.137 4.137 21 H 0.035 0.965 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.260 0.740 27 H 0.326 0.674 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.831 7.533 -8.204 13.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C 0.119 3.881 4 H -0.012 1.012 5 C -0.550 4.550 6 H 0.064 0.936 7 C -0.190 4.190 8 N -0.561 5.561 9 Si 0.780 3.220 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.199 1.199 13 N -0.313 5.313 14 C -0.013 4.013 15 H 0.059 0.941 16 C -0.228 4.228 17 C -0.119 4.119 18 C -0.177 4.177 19 C -0.166 4.166 20 C -0.174 4.174 21 H 0.054 0.946 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.145 0.855 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.159 7.462 -8.264 12.724 hybrid contribution 0.426 -0.248 1.097 1.203 sum -5.733 7.214 -7.166 11.673 Atomic orbital electron populations 1.21731 0.96218 1.01004 1.00471 1.21612 0.94292 0.99262 1.00993 1.18890 0.93591 0.90427 0.85209 1.01223 1.21490 0.93164 1.36278 1.04076 0.93595 1.25677 1.02212 0.95452 0.95629 1.69996 1.36214 1.40006 1.09869 0.85685 0.80956 0.78173 0.77224 1.20087 1.20798 1.19911 1.60661 1.37562 1.02998 1.30097 1.21321 0.95350 0.88556 0.96037 0.94118 1.22498 0.97954 1.02470 0.99853 1.22529 0.98893 0.95268 0.95214 1.23030 1.00710 0.95119 0.98859 1.22729 1.00103 0.96810 0.96929 1.23083 0.97577 0.97440 0.99325 0.94556 0.92336 0.92527 0.94727 0.91581 0.93124 0.85504 0.91251 0.95228 0.90698 0.90957 0.91918 0.89729 0.90259 0.89986 0.89265 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 9.64 71.98 0.69 -4.52 16 2 C -0.12 -5.93 5.35 30.59 0.16 -5.77 16 3 C 0.23 11.64 1.83 44.17 0.08 11.72 16 4 H -0.03 -1.69 7.06 -2.39 -0.02 -1.71 16 5 C -0.51 -29.35 8.58 25.60 0.22 -29.13 16 6 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 7 C 0.01 0.46 5.29 84.65 0.45 0.91 16 8 N -0.92 -54.11 11.29 21.45 0.24 -53.86 16 9 Si 0.95 45.29 29.54 68.60 2.03 47.32 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 13 N -0.68 -29.15 6.04 -473.30 -2.86 -32.01 16 14 C 0.10 3.67 2.55 44.91 0.11 3.79 16 15 H 0.04 1.83 7.72 -2.39 -0.02 1.81 16 16 C -0.17 -5.35 7.98 71.98 0.57 -4.78 16 17 C -0.10 -3.07 3.90 -10.21 -0.04 -3.11 16 18 C -0.14 -3.48 7.45 31.12 0.23 -3.24 16 19 C -0.13 -2.66 8.08 31.12 0.25 -2.41 16 20 C -0.14 -3.33 7.34 31.18 0.23 -3.10 16 21 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.06 1.94 6.66 -2.39 -0.02 1.92 16 23 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.03 1.66 8.14 -2.38 -0.02 1.64 16 25 H 0.07 3.63 5.94 -2.39 -0.01 3.61 16 26 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.33 12.53 6.25 -89.70 -0.56 11.97 16 28 H 0.07 1.93 6.47 -2.39 -0.02 1.92 16 29 H 0.03 1.05 7.44 -2.39 -0.02 1.04 16 30 H 0.07 2.00 6.25 -2.39 -0.01 1.99 16 31 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 2.02 6.35 -2.39 -0.02 2.00 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.09 2.05 5.64 -2.39 -0.01 2.03 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -61.12 283.21 2.84 -58.28 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.47 Total: 19.93 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 2.97 Total: -39.65 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -2.62 Total: -85.88 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -61.12 2.84 -58.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124057085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.640 kcal (2) G-P(sol) polarization free energy of solvation -61.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds