Wall clock time and date at job start Sun Mar 29 2020 21:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46697 * 2 1 4 4 H 1.08999 * 109.47057 * 302.73592 * 3 2 1 5 5 C 1.50700 * 109.46897 * 182.73548 * 3 2 1 6 6 H 1.08003 * 120.00002 * 245.74737 * 5 3 2 7 7 C 1.37879 * 120.00004 * 65.74819 * 5 3 2 8 8 N 1.31516 * 119.99733 * 193.25198 * 7 5 3 9 9 Si 1.86802 * 120.00099 * 13.24895 * 7 5 3 10 10 H 1.48499 * 109.46950 * 85.88153 * 9 7 5 11 11 H 1.48492 * 109.47050 * 205.88121 * 9 7 5 12 12 H 1.48499 * 109.47104 * 325.88634 * 9 7 5 13 13 N 1.46898 * 109.47190 * 62.73570 * 3 2 1 14 14 C 1.46898 * 110.99896 * 210.15562 * 13 3 2 15 15 H 1.09001 * 109.46994 * 38.53533 * 14 13 3 16 16 C 1.52994 * 109.47150 * 278.52899 * 14 13 3 17 17 C 1.53005 * 109.46681 * 158.53115 * 14 13 3 18 18 C 1.53781 * 113.61225 * 175.81302 * 17 14 13 19 19 C 1.53773 * 87.08095 * 139.98192 * 18 17 14 20 20 C 1.53775 * 87.08385 * 334.56919 * 19 18 17 21 21 H 1.08996 * 109.47103 * 304.91891 * 1 2 3 22 22 H 1.08999 * 109.47016 * 64.92307 * 1 2 3 23 23 H 1.09003 * 109.46581 * 184.92234 * 1 2 3 24 24 H 1.08997 * 109.47554 * 239.99977 * 2 1 3 25 25 H 1.08995 * 109.47050 * 119.99563 * 2 1 3 26 26 H 0.97006 * 119.99670 * 179.97438 * 8 7 5 27 27 H 1.00906 * 110.99739 * 86.19896 * 13 3 2 28 28 H 1.09005 * 109.47109 * 180.02562 * 16 14 13 29 29 H 1.09001 * 109.47690 * 300.00208 * 16 14 13 30 30 H 1.09001 * 109.47086 * 60.00115 * 16 14 13 31 31 H 1.09003 * 112.91069 * 44.56858 * 17 14 13 32 32 H 1.09009 * 113.61461 * 25.43589 * 18 17 14 33 33 H 1.08997 * 113.61751 * 254.53452 * 18 17 14 34 34 H 1.09000 * 113.61375 * 89.11846 * 19 18 17 35 35 H 1.09010 * 113.61763 * 220.01942 * 19 18 17 36 36 H 1.09000 * 113.61869 * 139.98010 * 20 19 18 37 37 H 1.09001 * 113.61743 * 270.79965 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6370 1.9703 -0.8644 5 6 3.5454 1.4432 -0.0678 6 1 4.1234 1.8140 0.7658 7 6 4.1849 0.9704 -1.1941 8 7 5.4767 0.7252 -1.1626 9 14 3.2167 0.6780 -2.7646 10 1 3.1350 1.9428 -3.5384 11 1 3.8985 -0.3584 -3.5807 12 1 1.8469 0.2173 -2.4231 13 7 1.6049 2.1157 1.2311 14 6 1.4150 3.5547 1.0053 15 1 0.9718 3.7128 0.0221 16 6 2.7683 4.2649 1.0749 17 6 0.4857 4.1214 2.0807 18 6 0.3019 5.6457 1.9951 19 6 -1.1799 5.4068 2.3291 20 6 -1.0069 4.0008 1.7310 21 1 -0.3633 0.5882 0.8426 22 1 -0.3633 0.4356 -0.9308 23 1 -0.3632 -1.0239 0.0882 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 5.9265 0.3922 -1.9549 27 1 2.2570 1.9506 1.9832 28 1 2.6273 5.3328 0.9078 29 1 3.2116 4.1068 2.0581 30 1 3.4303 3.8612 0.3088 31 1 0.7297 3.7666 3.0821 32 1 0.4646 6.0497 0.9958 33 1 0.8407 6.1946 2.7675 34 1 -1.3914 5.4035 3.3984 35 1 -1.8629 6.0409 1.7636 36 1 -1.5248 3.2215 2.2902 37 1 -1.2034 3.9546 0.6599 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124057346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:39 Heat of formation + Delta-G solvation = 3.399010 kcal Electronic energy + Delta-G solvation = -14843.615225 eV Core-core repulsion = 12620.875602 eV Total energy + Delta-G solvation = -2222.739623 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.91015 -36.23506 -32.81403 -31.82733 -28.63320 -26.62452 -25.27902 -24.80224 -22.41526 -20.62066 -19.85048 -18.84285 -16.80640 -15.40903 -15.06181 -14.75435 -13.98635 -13.34133 -13.01190 -12.76903 -12.58294 -12.19784 -12.08088 -11.96557 -11.54126 -11.46471 -11.12697 -10.80321 -10.71027 -10.55191 -10.32533 -10.09445 -9.90590 -9.88132 -9.54491 -9.37212 -9.02392 -8.43835 -7.23947 -6.11750 -4.07563 3.27898 3.37298 3.40654 4.41385 4.84327 4.93383 5.03230 5.14576 5.20716 5.53555 5.79785 5.82821 5.99491 6.02305 6.06678 6.09902 6.14627 6.18543 6.21739 6.32866 6.38770 6.44919 6.59615 6.66476 6.78217 6.86826 6.87878 7.11805 7.16658 7.27361 7.45079 7.64213 8.14614 8.44932 8.58953 8.95273 9.55030 11.00983 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035738 B = 0.009526 C = 0.008453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.298684 B = 2938.614916 C = 3311.576742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.188 3.812 4 H 0.023 0.977 5 C -0.543 4.543 6 H 0.074 0.926 7 C 0.076 3.924 8 N -0.894 5.894 9 Si 0.860 3.140 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.246 1.246 13 N -0.676 5.676 14 C 0.103 3.897 15 H 0.065 0.935 16 C -0.180 4.180 17 C -0.093 4.093 18 C -0.137 4.137 19 C -0.147 4.147 20 C -0.126 4.126 21 H 0.062 0.938 22 H 0.034 0.966 23 H 0.029 0.971 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.262 0.738 27 H 0.334 0.666 28 H 0.039 0.961 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.727 6.127 4.245 13.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C 0.079 3.921 4 H 0.041 0.959 5 C -0.581 4.581 6 H 0.092 0.908 7 C -0.127 4.127 8 N -0.532 5.532 9 Si 0.688 3.312 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.171 1.171 13 N -0.304 5.304 14 C -0.008 4.008 15 H 0.083 0.917 16 C -0.239 4.239 17 C -0.112 4.112 18 C -0.175 4.175 19 C -0.184 4.184 20 C -0.164 4.164 21 H 0.081 0.919 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.151 0.849 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.242 5.888 4.040 13.319 hybrid contribution 0.747 0.125 -1.048 1.293 sum -10.495 6.013 2.992 12.460 Atomic orbital electron populations 1.21733 0.98103 0.99177 1.00975 1.21884 0.93310 0.99262 1.00707 1.19469 0.93847 0.90655 0.88163 0.95894 1.21731 0.90320 1.42778 1.03299 0.90842 1.24962 0.94644 0.94192 0.98894 1.69983 1.09612 1.44265 1.29311 0.87294 0.81973 0.78115 0.83848 1.20731 1.21609 1.17061 1.60795 1.52522 1.07980 1.09123 1.21413 0.93742 0.88829 0.96836 0.91674 1.22563 0.99302 0.99394 1.02632 1.22504 0.94865 0.94090 0.99702 1.22928 0.95996 0.97141 1.01406 1.22851 0.96982 0.98114 1.00478 1.22825 0.96943 0.95942 1.00662 0.91867 0.94721 0.95176 0.92917 0.92999 0.92784 0.84909 0.94152 0.93657 0.90068 0.89774 0.90423 0.92147 0.90790 0.92213 0.91925 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.84 37.16 0.37 -2.30 16 2 C -0.11 -2.48 4.99 -26.73 -0.13 -2.61 16 3 C 0.19 4.29 1.56 -68.86 -0.11 4.18 16 4 H 0.02 0.55 6.11 -51.93 -0.32 0.24 16 5 C -0.54 -14.53 7.16 -34.44 -0.25 -14.78 16 6 H 0.07 2.13 7.52 -52.48 -0.39 1.74 16 7 C 0.08 2.14 5.37 -17.82 -0.10 2.04 16 8 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 9 Si 0.86 21.05 25.87 -169.99 -4.40 16.65 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.25 -5.69 5.32 56.52 0.30 -5.39 16 13 N -0.68 -13.30 5.32 -100.95 -0.54 -13.84 16 14 C 0.10 1.81 2.46 -67.71 -0.17 1.64 16 15 H 0.07 1.22 7.19 -51.93 -0.37 0.85 16 16 C -0.18 -3.27 8.54 37.15 0.32 -2.95 16 17 C -0.09 -1.35 3.50 -89.81 -0.31 -1.66 16 18 C -0.14 -1.73 6.57 -25.92 -0.17 -1.91 16 19 C -0.15 -1.70 8.08 -25.93 -0.21 -1.91 16 20 C -0.13 -1.70 7.63 -25.92 -0.20 -1.90 16 21 H 0.06 1.15 7.54 -51.93 -0.39 0.76 16 22 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 1.22 4.70 -51.93 -0.24 0.97 16 25 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.33 6.76 8.07 -39.29 -0.32 6.44 16 28 H 0.04 0.64 7.20 -51.93 -0.37 0.27 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.76 6.26 -51.93 -0.33 1.44 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.00 7.91 -51.92 -0.41 0.59 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.06 7.91 -51.93 -0.41 0.65 16 LS Contribution 282.39 15.07 4.26 4.26 Total: -1.00 -27.81 282.39 -7.46 -35.27 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.60 Total: 5.94 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -0.96 Total: -22.15 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.24 Total: -39.97 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.40 Total: 16.65 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.81 -7.46 -35.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124057346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.670 kcal (2) G-P(sol) polarization free energy of solvation -27.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds