Wall clock time and date at job start Sun Mar 29 2020 21:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46697 * 2 1 4 4 H 1.08999 * 109.47057 * 302.73592 * 3 2 1 5 5 C 1.50700 * 109.46897 * 182.73548 * 3 2 1 6 6 H 1.08003 * 120.00002 * 245.74737 * 5 3 2 7 7 C 1.37879 * 120.00004 * 65.74819 * 5 3 2 8 8 N 1.31516 * 119.99733 * 193.25198 * 7 5 3 9 9 Si 1.86802 * 120.00099 * 13.24895 * 7 5 3 10 10 H 1.48499 * 109.46950 * 85.88153 * 9 7 5 11 11 H 1.48492 * 109.47050 * 205.88121 * 9 7 5 12 12 H 1.48499 * 109.47104 * 325.88634 * 9 7 5 13 13 N 1.46898 * 109.47190 * 62.73570 * 3 2 1 14 14 C 1.46898 * 110.99896 * 210.15562 * 13 3 2 15 15 H 1.09001 * 109.46994 * 38.53533 * 14 13 3 16 16 C 1.52994 * 109.47150 * 278.52899 * 14 13 3 17 17 C 1.53005 * 109.46681 * 158.53115 * 14 13 3 18 18 C 1.53781 * 113.61225 * 175.81302 * 17 14 13 19 19 C 1.53773 * 87.08095 * 139.98192 * 18 17 14 20 20 C 1.53775 * 87.08385 * 334.56919 * 19 18 17 21 21 H 1.08996 * 109.47103 * 304.91891 * 1 2 3 22 22 H 1.08999 * 109.47016 * 64.92307 * 1 2 3 23 23 H 1.09003 * 109.46581 * 184.92234 * 1 2 3 24 24 H 1.08997 * 109.47554 * 239.99977 * 2 1 3 25 25 H 1.08995 * 109.47050 * 119.99563 * 2 1 3 26 26 H 0.97006 * 119.99670 * 179.97438 * 8 7 5 27 27 H 1.00906 * 110.99739 * 86.19896 * 13 3 2 28 28 H 1.09005 * 109.47109 * 180.02562 * 16 14 13 29 29 H 1.09001 * 109.47690 * 300.00208 * 16 14 13 30 30 H 1.09001 * 109.47086 * 60.00115 * 16 14 13 31 31 H 1.09003 * 112.91069 * 44.56858 * 17 14 13 32 32 H 1.09009 * 113.61461 * 25.43589 * 18 17 14 33 33 H 1.08997 * 113.61751 * 254.53452 * 18 17 14 34 34 H 1.09000 * 113.61375 * 89.11846 * 19 18 17 35 35 H 1.09010 * 113.61763 * 220.01942 * 19 18 17 36 36 H 1.09000 * 113.61869 * 139.98010 * 20 19 18 37 37 H 1.09001 * 113.61743 * 270.79965 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6370 1.9703 -0.8644 5 6 3.5454 1.4432 -0.0678 6 1 4.1234 1.8140 0.7658 7 6 4.1849 0.9704 -1.1941 8 7 5.4767 0.7252 -1.1626 9 14 3.2167 0.6780 -2.7646 10 1 3.1350 1.9428 -3.5384 11 1 3.8985 -0.3584 -3.5807 12 1 1.8469 0.2173 -2.4231 13 7 1.6049 2.1157 1.2311 14 6 1.4150 3.5547 1.0053 15 1 0.9718 3.7128 0.0221 16 6 2.7683 4.2649 1.0749 17 6 0.4857 4.1214 2.0807 18 6 0.3019 5.6457 1.9951 19 6 -1.1799 5.4068 2.3291 20 6 -1.0069 4.0008 1.7310 21 1 -0.3633 0.5882 0.8426 22 1 -0.3633 0.4356 -0.9308 23 1 -0.3632 -1.0239 0.0882 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 5.9265 0.3922 -1.9549 27 1 2.2570 1.9506 1.9832 28 1 2.6273 5.3328 0.9078 29 1 3.2116 4.1068 2.0581 30 1 3.4303 3.8612 0.3088 31 1 0.7297 3.7666 3.0821 32 1 0.4646 6.0497 0.9958 33 1 0.8407 6.1946 2.7675 34 1 -1.3914 5.4035 3.3984 35 1 -1.8629 6.0409 1.7636 36 1 -1.5248 3.2215 2.2902 37 1 -1.2034 3.9546 0.6599 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124057346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:39 Heat of formation + Delta-G solvation = -13.550703 kcal Electronic energy + Delta-G solvation = -14844.350219 eV Core-core repulsion = 12620.875602 eV Total energy + Delta-G solvation = -2223.474617 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.11712 -37.85586 -34.58627 -33.71411 -30.23029 -28.42754 -26.49288 -25.93520 -24.23126 -21.98786 -21.55277 -20.06199 -18.85696 -17.02288 -16.52061 -16.05553 -15.63196 -14.86470 -14.82341 -14.42624 -14.13860 -13.56348 -13.49772 -13.31040 -13.23193 -13.05328 -12.56500 -12.44757 -12.33813 -12.08006 -11.83035 -11.64675 -11.34131 -11.21596 -11.13798 -10.91338 -10.75855 -10.50222 -8.93432 -8.29920 -6.28578 1.32222 1.36400 1.45440 2.34899 3.05260 3.53262 3.85432 3.97047 4.07076 4.24864 4.42295 4.52895 4.56475 4.62541 4.72258 4.78349 4.90900 4.96006 4.98875 5.00570 5.08188 5.18601 5.21566 5.26241 5.28414 5.41854 5.49339 5.54781 5.58140 5.60401 5.75331 5.80333 6.18837 6.51264 6.73283 6.90443 7.37774 8.85946 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035738 B = 0.009526 C = 0.008453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.298684 B = 2938.614916 C = 3311.576742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.114 4.114 3 C 0.194 3.806 4 H 0.018 0.982 5 C -0.534 4.534 6 H 0.037 0.963 7 C 0.019 3.981 8 N -0.944 5.944 9 Si 0.918 3.082 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.221 1.221 13 N -0.665 5.665 14 C 0.102 3.898 15 H 0.056 0.944 16 C -0.171 4.171 17 C -0.094 4.094 18 C -0.134 4.134 19 C -0.133 4.133 20 C -0.128 4.128 21 H 0.068 0.932 22 H 0.038 0.962 23 H 0.051 0.949 24 H 0.040 0.960 25 H 0.044 0.956 26 H 0.262 0.738 27 H 0.330 0.670 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.404 6.768 4.424 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.153 4.153 3 C 0.084 3.916 4 H 0.036 0.964 5 C -0.572 4.572 6 H 0.056 0.944 7 C -0.180 4.180 8 N -0.584 5.584 9 Si 0.743 3.257 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.144 1.144 13 N -0.293 5.293 14 C -0.008 4.008 15 H 0.074 0.926 16 C -0.230 4.230 17 C -0.113 4.113 18 C -0.172 4.172 19 C -0.170 4.170 20 C -0.165 4.165 21 H 0.087 0.913 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.146 0.854 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.949 6.541 4.233 15.978 hybrid contribution 1.637 -0.026 -1.012 1.925 sum -12.312 6.515 3.221 14.297 Atomic orbital electron populations 1.21624 0.95101 1.00811 1.01444 1.21813 0.95943 0.97758 0.99761 1.19351 0.90952 0.91942 0.89360 0.96380 1.22009 0.92503 1.40918 1.01817 0.94447 1.25764 0.95443 0.94488 1.02260 1.70120 1.11557 1.46541 1.30224 0.86357 0.81770 0.77920 0.79652 1.20572 1.21790 1.14421 1.60849 1.51531 1.09389 1.07516 1.21517 0.93957 0.87514 0.97812 0.92572 1.22434 0.98827 1.00699 1.01054 1.22478 0.94880 0.95637 0.98338 1.22928 0.97165 0.95389 1.01755 1.22795 0.96230 0.96662 1.01347 1.22828 0.95693 0.97469 1.00540 0.91342 0.94275 0.93005 0.94179 0.93741 0.92890 0.85370 0.91863 0.93632 0.94303 0.89750 0.90573 0.91200 0.89494 0.90859 0.91734 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 9.84 71.98 0.71 -3.84 16 2 C -0.11 -4.83 4.99 30.60 0.15 -4.68 16 3 C 0.19 8.77 1.56 44.17 0.07 8.84 16 4 H 0.02 0.85 6.11 -2.39 -0.01 0.84 16 5 C -0.53 -29.31 7.16 25.60 0.18 -29.13 16 6 H 0.04 2.28 7.52 -2.91 -0.02 2.25 16 7 C 0.02 1.06 5.37 84.65 0.45 1.52 16 8 N -0.94 -58.71 13.96 21.45 0.30 -58.42 16 9 Si 0.92 43.59 25.87 68.60 1.77 45.36 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 11 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 12 H -0.22 -9.54 5.32 99.48 0.53 -9.01 16 13 N -0.67 -25.79 5.32 -473.31 -2.52 -28.31 16 14 C 0.10 3.51 2.46 44.92 0.11 3.62 16 15 H 0.06 2.04 7.19 -2.39 -0.02 2.02 16 16 C -0.17 -6.21 8.54 71.98 0.61 -5.60 16 17 C -0.09 -2.55 3.50 -10.27 -0.04 -2.58 16 18 C -0.13 -3.02 6.57 31.12 0.20 -2.82 16 19 C -0.13 -2.60 8.08 31.12 0.25 -2.35 16 20 C -0.13 -3.08 7.63 31.12 0.24 -2.84 16 21 H 0.07 2.28 7.54 -2.39 -0.02 2.26 16 22 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.04 1.78 4.70 -2.39 -0.01 1.77 16 25 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 27 H 0.33 13.39 8.07 -89.69 -0.72 12.67 16 28 H 0.06 1.96 7.20 -2.38 -0.02 1.94 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.72 6.26 -2.39 -0.01 1.71 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.08 1.75 7.91 -2.38 -0.02 1.73 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.78 7.91 -2.39 -0.02 1.76 16 Total: -1.00 -60.54 282.39 2.63 -57.92 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.12 Total: 23.30 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 2.95 Total: -39.86 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -2.22 Total: -86.73 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.77 Total: 45.36 kcal Total: -60.54 2.63 -57.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124057346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.366 kcal (2) G-P(sol) polarization free energy of solvation -60.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds