Wall clock time and date at job start Sun Mar 29 2020 21:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 110.62649 * 2 1 4 4 C 1.55138 * 110.85589 * 236.79347 * 2 1 3 5 5 C 1.54906 * 101.65419 * 205.89323 * 4 2 1 6 6 H 1.08999 * 110.37433 * 278.24069 * 5 4 2 7 7 C 1.53001 * 110.37214 * 155.89838 * 5 4 2 8 8 N 1.47846 * 104.79354 * 37.06773 * 5 4 2 9 9 C 1.46896 * 111.00004 * 213.63485 * 8 5 4 10 10 C 1.52997 * 109.47114 * 190.72093 * 9 8 5 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47309 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47510 * 119.99847 * 16 14 12 19 19 H 1.48506 * 109.47246 * 239.99882 * 16 14 12 20 20 C 1.47445 * 108.56737 * 335.90775 * 8 5 4 21 21 H 1.09001 * 109.47011 * 298.34795 * 1 2 3 22 22 H 1.09005 * 109.46865 * 58.34674 * 1 2 3 23 23 H 1.09001 * 109.47115 * 178.34826 * 1 2 3 24 24 H 1.08997 * 110.98985 * 323.98634 * 4 2 1 25 25 H 1.09005 * 110.99246 * 87.76484 * 4 2 1 26 26 H 1.09001 * 109.46990 * 304.62564 * 7 5 4 27 27 H 1.08999 * 109.47120 * 64.62929 * 7 5 4 28 28 H 1.09000 * 109.46499 * 184.62607 * 7 5 4 29 29 H 1.08996 * 109.47194 * 70.72261 * 9 8 5 30 30 H 1.09001 * 109.47271 * 310.71824 * 9 8 5 31 31 H 1.09001 * 109.47502 * 60.00479 * 10 9 8 32 32 H 1.09001 * 109.47289 * 300.00275 * 10 9 8 33 33 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 34 34 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 35 35 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.88647 * 120.39587 * 20 8 5 37 37 H 1.09001 * 109.88624 * 241.57715 * 20 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9140 1.0201 0.0000 4 6 2.0824 -0.7940 -1.2130 5 6 3.4692 -1.2423 -0.6883 6 1 4.1954 -0.4371 -0.7992 7 6 3.9412 -2.4932 -1.4322 8 7 3.2515 -1.5456 0.7423 9 6 4.4411 -1.2138 1.5377 10 6 4.2848 -1.7810 2.9500 11 6 5.5236 -1.4348 3.7787 12 6 5.3699 -1.9941 5.1696 13 1 4.4777 -2.5413 5.4360 14 6 6.3678 -1.8063 6.1023 15 7 7.4540 -1.1395 5.7780 16 14 6.1769 -2.4988 7.8266 17 1 4.8734 -3.2018 7.9363 18 1 7.2798 -3.4546 8.1011 19 1 6.2255 -1.3902 8.8135 20 6 2.0756 -0.7884 1.2091 21 1 -0.3633 0.4880 0.9044 22 1 -0.3633 0.5393 -0.8748 23 1 -0.3633 -1.0272 -0.0296 24 1 1.4522 -1.6549 -1.4358 25 1 2.1843 -0.1507 -2.0871 26 1 3.1857 -3.2742 -1.3456 27 1 4.0969 -2.2533 -2.4840 28 1 4.8772 -2.8432 -0.9969 29 1 4.5518 -0.1308 1.5913 30 1 5.3245 -1.6465 1.0681 31 1 4.1741 -2.8640 2.8965 32 1 3.4014 -1.3483 3.4196 33 1 6.4072 -1.8673 3.3092 34 1 5.6338 -0.3518 3.8322 35 1 8.1558 -1.0070 6.4342 36 1 1.3143 -1.4760 1.5777 37 1 2.3691 -0.0982 2.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125696158.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:43 Heat of formation + Delta-G solvation = -27.258668 kcal Electronic energy + Delta-G solvation = -14181.606781 eV Core-core repulsion = 11957.537742 eV Total energy + Delta-G solvation = -2224.069039 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.24905 -34.58831 -32.96681 -32.03938 -30.17856 -27.12891 -26.08941 -24.83543 -22.40673 -20.69927 -19.85451 -19.33185 -16.53105 -16.03306 -14.98699 -14.39683 -14.20085 -13.92177 -13.49836 -13.29580 -12.79318 -12.33103 -12.26920 -12.03733 -11.75188 -11.65810 -11.25585 -11.03214 -10.74930 -10.69664 -10.62781 -10.49153 -10.38824 -10.32415 -9.59431 -9.26352 -8.99011 -8.30567 -7.97184 -5.95718 -3.97425 3.33921 3.41117 3.46019 4.21113 4.50510 4.61017 4.71906 4.89591 5.31921 5.37801 5.40141 5.44794 5.55390 5.63031 5.64376 5.78072 5.88201 5.91642 5.95623 5.96863 6.05712 6.10506 6.24088 6.35486 6.39280 6.45074 6.78076 6.87445 7.19075 7.38784 7.52619 7.74147 7.89287 8.05400 8.49298 9.10158 9.66418 11.15888 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.046890 B = 0.005738 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.996215 B = 4878.545212 C = 5214.846613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 H 0.071 0.929 4 C -0.119 4.119 5 C 0.064 3.936 6 H 0.050 0.950 7 C -0.133 4.133 8 N -0.527 5.527 9 C 0.052 3.948 10 C -0.102 4.102 11 C 0.021 3.979 12 C -0.516 4.516 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.048 3.952 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.028 0.972 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.015 0.985 34 H 0.013 0.987 35 H 0.259 0.741 36 H 0.074 0.926 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.645 1.570 -13.639 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.137 4.137 3 H 0.090 0.910 4 C -0.157 4.157 5 C -0.044 4.044 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.251 5.251 9 C -0.075 4.075 10 C -0.140 4.140 11 C -0.017 4.017 12 C -0.554 4.554 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.080 4.080 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.033 0.967 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.557 1.090 -13.496 17.169 hybrid contribution 0.265 0.602 0.969 1.171 sum -10.292 1.692 -12.526 16.300 Atomic orbital electron populations 1.21714 0.94522 1.01906 1.01449 1.22403 0.96194 0.99233 0.95840 0.91035 1.22820 0.96172 0.99669 0.97048 1.22547 0.96122 0.96678 0.89053 0.93162 1.21675 1.01701 0.97377 0.98321 1.63569 1.04588 1.55397 1.01543 1.22449 0.91570 0.97807 0.95690 1.21619 1.00428 1.00107 0.91893 1.19087 0.91992 0.96601 0.93997 1.21303 1.03370 1.34335 0.96436 0.92639 1.25029 0.95343 0.95398 0.98785 1.69976 1.07694 1.41415 1.34626 0.86549 0.78088 0.78797 0.84653 1.19723 1.21024 1.21076 1.22895 0.93446 0.95546 0.96154 0.92575 0.92911 0.92396 0.90698 0.91466 0.92182 0.92966 0.92466 0.95399 0.91482 0.92700 0.93623 0.96657 0.96908 0.93137 0.90766 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.14 37.16 0.34 -1.00 16 2 C -0.12 -1.36 3.53 -88.80 -0.31 -1.68 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.12 -1.32 5.95 -24.59 -0.15 -1.47 16 5 C 0.06 0.86 3.01 -66.19 -0.20 0.66 16 6 H 0.05 0.69 7.81 -51.93 -0.41 0.28 16 7 C -0.13 -1.61 9.59 37.16 0.36 -1.25 16 8 N -0.53 -8.41 4.81 -223.39 -1.07 -9.48 16 9 C 0.05 0.97 4.54 -3.83 -0.02 0.95 16 10 C -0.10 -2.24 5.18 -26.73 -0.14 -2.37 16 11 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 12 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 13 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 14 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16 16 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 C 0.05 0.69 5.80 -2.84 -0.02 0.67 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.81 7.95 -51.93 -0.41 0.40 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.03 0.52 7.96 -51.93 -0.41 0.11 16 30 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.05 0.99 7.14 -51.93 -0.37 0.61 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.07 1.07 7.82 -51.93 -0.41 0.66 16 37 H 0.06 0.91 6.91 -51.93 -0.36 0.55 16 LS Contribution 294.50 15.07 4.44 4.44 Total: -1.00 -30.36 294.50 -8.58 -38.95 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -6.98 Total: -5.23 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -0.69 Total: -18.93 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.34 Total: -36.30 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.36 -8.58 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125696158.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.687 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds