Wall clock time and date at job start Sun Mar 29 2020 21:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 110.62649 * 2 1 4 4 C 1.55138 * 110.85589 * 236.79347 * 2 1 3 5 5 C 1.54906 * 101.65419 * 205.89323 * 4 2 1 6 6 H 1.08999 * 110.37433 * 278.24069 * 5 4 2 7 7 C 1.53001 * 110.37214 * 155.89838 * 5 4 2 8 8 N 1.47846 * 104.79354 * 37.06773 * 5 4 2 9 9 C 1.46896 * 111.00004 * 213.63485 * 8 5 4 10 10 C 1.52997 * 109.47114 * 190.72093 * 9 8 5 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47309 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47510 * 119.99847 * 16 14 12 19 19 H 1.48506 * 109.47246 * 239.99882 * 16 14 12 20 20 C 1.47445 * 108.56737 * 335.90775 * 8 5 4 21 21 H 1.09001 * 109.47011 * 298.34795 * 1 2 3 22 22 H 1.09005 * 109.46865 * 58.34674 * 1 2 3 23 23 H 1.09001 * 109.47115 * 178.34826 * 1 2 3 24 24 H 1.08997 * 110.98985 * 323.98634 * 4 2 1 25 25 H 1.09005 * 110.99246 * 87.76484 * 4 2 1 26 26 H 1.09001 * 109.46990 * 304.62564 * 7 5 4 27 27 H 1.08999 * 109.47120 * 64.62929 * 7 5 4 28 28 H 1.09000 * 109.46499 * 184.62607 * 7 5 4 29 29 H 1.08996 * 109.47194 * 70.72261 * 9 8 5 30 30 H 1.09001 * 109.47271 * 310.71824 * 9 8 5 31 31 H 1.09001 * 109.47502 * 60.00479 * 10 9 8 32 32 H 1.09001 * 109.47289 * 300.00275 * 10 9 8 33 33 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 34 34 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 35 35 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.88647 * 120.39587 * 20 8 5 37 37 H 1.09001 * 109.88624 * 241.57715 * 20 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9140 1.0201 0.0000 4 6 2.0824 -0.7940 -1.2130 5 6 3.4692 -1.2423 -0.6883 6 1 4.1954 -0.4371 -0.7992 7 6 3.9412 -2.4932 -1.4322 8 7 3.2515 -1.5456 0.7423 9 6 4.4411 -1.2138 1.5377 10 6 4.2848 -1.7810 2.9500 11 6 5.5236 -1.4348 3.7787 12 6 5.3699 -1.9941 5.1696 13 1 4.4777 -2.5413 5.4360 14 6 6.3678 -1.8063 6.1023 15 7 7.4540 -1.1395 5.7780 16 14 6.1769 -2.4988 7.8266 17 1 4.8734 -3.2018 7.9363 18 1 7.2798 -3.4546 8.1011 19 1 6.2255 -1.3902 8.8135 20 6 2.0756 -0.7884 1.2091 21 1 -0.3633 0.4880 0.9044 22 1 -0.3633 0.5393 -0.8748 23 1 -0.3633 -1.0272 -0.0296 24 1 1.4522 -1.6549 -1.4358 25 1 2.1843 -0.1507 -2.0871 26 1 3.1857 -3.2742 -1.3456 27 1 4.0969 -2.2533 -2.4840 28 1 4.8772 -2.8432 -0.9969 29 1 4.5518 -0.1308 1.5913 30 1 5.3245 -1.6465 1.0681 31 1 4.1741 -2.8640 2.8965 32 1 3.4014 -1.3483 3.4196 33 1 6.4072 -1.8673 3.3092 34 1 5.6338 -0.3518 3.8322 35 1 8.1558 -1.0070 6.4342 36 1 1.3143 -1.4760 1.5777 37 1 2.3691 -0.0982 2.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125696158.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:43 Heat of formation + Delta-G solvation = -45.345647 kcal Electronic energy + Delta-G solvation = -14182.391092 eV Core-core repulsion = 11957.537742 eV Total energy + Delta-G solvation = -2224.853349 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.38578 -36.34044 -34.62425 -33.37259 -31.77621 -28.50379 -27.37940 -26.21699 -24.16948 -22.08254 -21.15475 -20.57488 -18.52384 -17.43456 -16.57587 -16.23662 -15.43173 -15.16167 -14.78375 -14.47779 -14.14605 -13.82937 -13.73593 -13.33378 -13.06656 -12.85149 -12.75970 -12.64628 -12.38603 -12.15717 -12.12505 -11.64785 -11.59003 -11.47018 -11.38396 -11.31614 -11.03914 -10.57396 -9.24616 -8.21620 -6.32998 1.39013 1.39565 1.53407 2.40072 3.01410 3.11313 3.63603 3.72516 3.95044 4.18632 4.27896 4.33909 4.47721 4.51682 4.61709 4.69103 4.74018 4.83861 4.89375 4.92699 4.95217 5.07018 5.10838 5.13501 5.16674 5.21295 5.33069 5.42949 5.47884 5.50795 5.71667 5.83530 6.13233 6.17128 6.28075 6.83522 7.36382 8.90734 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.046890 B = 0.005738 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.996215 B = 4878.545212 C = 5214.846613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 H 0.071 0.929 4 C -0.109 4.109 5 C 0.057 3.943 6 H 0.046 0.954 7 C -0.129 4.129 8 N -0.536 5.536 9 C 0.066 3.934 10 C -0.086 4.086 11 C 0.026 3.974 12 C -0.543 4.543 13 H 0.058 0.942 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.263 1.263 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.042 3.958 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.022 0.978 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.045 0.955 33 H -0.009 1.009 34 H -0.011 1.011 35 H 0.264 0.736 36 H 0.074 0.926 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.071 1.278 -14.198 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.132 4.132 3 H 0.089 0.911 4 C -0.147 4.147 5 C -0.051 4.051 6 H 0.064 0.936 7 C -0.187 4.187 8 N -0.260 5.260 9 C -0.062 4.062 10 C -0.124 4.124 11 C -0.012 4.012 12 C -0.581 4.581 13 H 0.076 0.924 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.086 4.086 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.078 0.922 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.010 0.990 34 H 0.007 0.993 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.998 0.798 -14.073 18.510 hybrid contribution 0.730 0.709 1.116 1.510 sum -11.268 1.507 -12.957 17.237 Atomic orbital electron populations 1.21682 0.92772 1.02353 1.02321 1.22380 0.97580 0.98713 0.94515 0.91064 1.22803 0.94395 1.00165 0.97356 1.22714 0.97723 0.97243 0.87440 0.93633 1.21659 1.00767 0.96747 0.99505 1.63535 1.03697 1.55945 1.02865 1.22139 0.92901 0.97033 0.94155 1.21354 0.97898 0.99784 0.93339 1.18979 0.93293 0.94690 0.94229 1.21703 1.03774 1.34862 0.97738 0.92400 1.26003 0.94778 0.95488 1.03580 1.70103 1.08563 1.42375 1.36420 0.85366 0.78546 0.78256 0.78683 1.18671 1.20162 1.20175 1.22958 0.92946 0.95494 0.97170 0.92584 0.91147 0.92210 0.89954 0.89231 0.92160 0.90474 0.94097 0.95974 0.91881 0.93195 0.93579 0.99019 0.99256 0.92705 0.90741 0.94209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.14 71.98 0.66 -1.59 16 2 C -0.11 -2.39 3.53 -9.61 -0.03 -2.43 16 3 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.11 -2.13 5.95 31.98 0.19 -1.94 16 5 C 0.06 1.43 3.01 45.39 0.14 1.56 16 6 H 0.05 1.20 7.81 -2.39 -0.02 1.18 16 7 C -0.13 -2.92 9.59 71.98 0.69 -2.23 16 8 N -0.54 -16.88 4.81 -860.67 -4.14 -21.02 16 9 C 0.07 2.48 4.54 86.30 0.39 2.88 16 10 C -0.09 -3.84 5.18 30.60 0.16 -3.68 16 11 C 0.03 1.43 4.97 29.85 0.15 1.58 16 12 C -0.54 -32.25 9.11 25.60 0.23 -32.02 16 13 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 14 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 15 N -0.93 -58.26 13.29 21.45 0.28 -57.98 16 16 Si 0.97 45.37 29.54 68.60 2.03 47.39 16 17 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 20 C 0.04 1.19 5.80 86.64 0.50 1.70 16 21 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.08 1.51 7.95 -2.39 -0.02 1.49 16 25 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.02 0.85 7.96 -2.39 -0.02 0.83 16 30 H 0.06 2.40 8.07 -2.39 -0.02 2.38 16 31 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.05 2.03 7.14 -2.39 -0.02 2.01 16 33 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 35 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.07 2.09 7.82 -2.39 -0.02 2.07 16 37 H 0.04 1.26 6.91 -2.39 -0.02 1.24 16 Total: -1.00 -65.29 294.50 2.69 -62.60 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: 0.99 Total: 4.77 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 3.54 Total: -35.76 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -3.86 Total: -79.00 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -65.29 2.69 -62.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125696158.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.252 kcal (2) G-P(sol) polarization free energy of solvation -65.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds