Wall clock time and date at job start Sun Mar 29 2020 21:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46789 * 2 1 4 4 N 1.46899 * 109.46683 * 240.00551 * 2 1 3 5 5 C 1.46896 * 111.00433 * 84.99973 * 4 2 1 6 6 C 1.52995 * 109.47512 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47705 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47453 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00246 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99882 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99780 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00159 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.46934 * 89.99889 * 12 10 8 14 14 H 1.48498 * 109.47069 * 210.00204 * 12 10 8 15 15 H 1.48502 * 109.46930 * 330.00162 * 12 10 8 16 16 C 1.52994 * 109.47395 * 120.00382 * 2 1 3 17 17 C 1.53784 * 113.61184 * 282.76031 * 16 2 1 18 18 C 1.53957 * 87.01865 * 220.04744 * 17 16 2 19 19 C 1.53780 * 113.61542 * 185.15353 * 16 2 1 20 20 H 1.09005 * 109.46738 * 296.84738 * 1 2 3 21 21 H 1.08997 * 109.47544 * 56.84963 * 1 2 3 22 22 H 1.08996 * 109.47224 * 176.85435 * 1 2 3 23 23 H 1.00905 * 110.99726 * 208.94809 * 4 2 1 24 24 H 1.09002 * 109.47343 * 59.99632 * 5 4 2 25 25 H 1.09001 * 109.47051 * 299.99452 * 5 4 2 26 26 H 1.09005 * 109.47022 * 299.99655 * 6 5 4 27 27 H 1.09003 * 109.47600 * 59.99569 * 6 5 4 28 28 H 1.08997 * 109.46828 * 300.00345 * 7 6 5 29 29 H 1.09002 * 109.47117 * 59.99698 * 7 6 5 30 30 H 0.97000 * 119.99962 * 179.97438 * 11 10 8 31 31 H 1.09000 * 112.85482 * 53.95338 * 16 2 1 32 32 H 1.09002 * 113.61691 * 334.57070 * 17 16 2 33 33 H 1.09001 * 113.61573 * 105.47220 * 17 16 2 34 34 H 1.08998 * 113.53576 * 270.81357 * 18 17 16 35 35 H 1.09001 * 113.73794 * 139.94379 * 18 17 16 36 36 H 1.08995 * 113.61481 * 254.52782 * 19 16 2 37 37 H 1.09003 * 113.61210 * 25.43579 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5960 -0.5327 -3.5743 7 6 2.6608 0.4202 -4.7695 8 6 3.1674 -0.3237 -5.9782 9 1 3.4177 -1.3715 -5.9018 10 6 3.3113 0.3334 -7.1818 11 7 3.7529 -0.3159 -8.2368 12 14 2.8791 2.1460 -7.3140 13 1 4.0794 2.9647 -7.0069 14 1 2.4153 2.4450 -8.6926 15 1 1.7991 2.4690 -6.3473 16 6 2.0401 -0.7213 1.2491 17 6 1.9520 0.1265 2.5291 18 6 3.3239 -0.4568 2.9137 19 6 3.5685 -0.6682 1.4102 20 1 -0.3633 0.4641 0.9170 21 1 -0.3634 0.5619 -0.8604 22 1 -0.3633 -1.0261 -0.0564 23 1 2.9173 -1.1204 -1.0289 24 1 2.7588 1.0463 -2.1183 25 1 1.0870 0.6164 -2.5526 26 1 3.5916 -0.9260 -3.3684 27 1 1.9200 -1.3565 -3.8032 28 1 1.6652 0.8133 -4.9751 29 1 3.3367 1.2444 -4.5409 30 1 3.8538 0.1462 -9.0836 31 1 1.6240 -1.7227 1.3593 32 1 1.9706 1.2005 2.3437 33 1 1.1456 -0.1746 3.1977 34 1 3.2586 -1.3856 3.4802 35 1 3.9979 0.2696 3.3678 36 1 4.0651 -1.6099 1.1769 37 1 4.0299 0.1882 0.9183 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133238029.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:06 Heat of formation + Delta-G solvation = -7.972708 kcal Electronic energy + Delta-G solvation = -13888.310646 eV Core-core repulsion = 11665.077909 eV Total energy + Delta-G solvation = -2223.232737 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.44592 -36.18013 -33.65904 -31.85651 -29.66496 -26.69765 -25.47124 -25.36833 -22.23147 -20.79500 -20.08511 -19.41510 -16.70753 -16.07015 -15.54056 -15.00706 -14.56460 -14.06422 -13.64880 -13.04929 -12.67355 -12.63111 -12.46601 -12.18329 -11.97923 -11.87757 -11.51672 -11.20104 -10.87999 -10.74624 -10.58110 -10.45430 -10.15923 -9.89022 -9.68217 -9.48481 -9.13014 -8.50144 -8.15620 -6.00593 -3.98054 3.32793 3.40020 3.44391 4.19687 4.46229 4.48475 4.53313 4.66696 4.82300 5.15860 5.27212 5.33421 5.49189 5.56037 5.57239 5.67152 5.70005 5.72484 5.79360 5.86638 5.89138 6.01724 6.10985 6.21794 6.28780 6.41664 6.61072 6.65832 6.96575 7.31230 7.41754 7.49026 7.68092 7.84486 8.59148 9.05170 9.62231 11.13070 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054126 B = 0.005086 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.189798 B = 5503.982521 C = 5630.962290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.091 3.909 3 H 0.039 0.961 4 N -0.686 5.686 5 C 0.057 3.943 6 C -0.099 4.099 7 C -0.013 4.013 8 C -0.518 4.518 9 H 0.072 0.928 10 C 0.065 3.935 11 N -0.905 5.905 12 Si 0.880 3.120 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.266 1.266 16 C -0.109 4.109 17 C -0.134 4.134 18 C -0.141 4.141 19 C -0.143 4.143 20 H 0.051 0.949 21 H 0.052 0.948 22 H 0.060 0.940 23 H 0.339 0.661 24 H 0.021 0.979 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.015 0.985 29 H 0.008 0.992 30 H 0.262 0.738 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.545 1.760 21.077 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.019 4.019 3 H 0.057 0.943 4 N -0.317 5.317 5 C -0.071 4.071 6 C -0.137 4.137 7 C -0.051 4.051 8 C -0.556 4.556 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.545 5.545 12 Si 0.708 3.292 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.190 1.190 16 C -0.128 4.128 17 C -0.172 4.172 18 C -0.179 4.179 19 C -0.181 4.181 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.157 0.843 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.033 0.967 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.128 1.538 20.711 21.174 hybrid contribution 0.631 1.511 -0.059 1.639 sum -3.496 3.049 20.651 21.166 Atomic orbital electron populations 1.21754 0.94846 1.02257 1.00736 1.21512 0.95833 0.95396 0.89129 0.94292 1.60558 1.33333 1.33758 1.04094 1.22179 1.00248 0.93741 0.90980 1.21441 0.99992 0.99117 0.93188 1.19544 0.96400 0.95230 0.93923 1.21166 1.43318 0.98342 0.92776 0.91031 1.25044 0.94693 0.98109 0.95746 1.69923 1.47003 1.36603 1.00930 0.86767 0.79277 0.85934 0.77230 1.20388 1.21401 1.19047 1.22732 0.95842 1.00046 0.94173 1.22947 0.97424 0.99687 0.97164 1.22814 0.97458 1.01052 0.96553 1.22954 0.96384 1.02223 0.96491 0.93042 0.92851 0.92071 0.84297 0.96030 0.91597 0.93128 0.91965 0.96650 0.97351 0.92803 0.88701 0.90274 0.91567 0.90299 0.91675 0.91227 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.36 37.16 0.35 -1.26 16 2 C 0.09 1.11 2.35 -67.71 -0.16 0.95 16 3 H 0.04 0.50 7.71 -51.93 -0.40 0.10 16 4 N -0.69 -9.99 6.31 -106.73 -0.67 -10.66 16 5 C 0.06 0.97 5.48 -3.83 -0.02 0.95 16 6 C -0.10 -2.04 5.41 -26.74 -0.14 -2.19 16 7 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 8 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 9 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 10 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 11 N -0.91 -28.49 13.96 55.43 0.77 -27.72 16 12 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 16 C -0.11 -1.10 3.20 -89.81 -0.29 -1.39 16 17 C -0.13 -1.16 7.44 -25.82 -0.19 -1.35 16 18 C -0.14 -1.17 8.09 -25.83 -0.21 -1.38 16 19 C -0.14 -1.37 6.75 -25.92 -0.18 -1.55 16 20 H 0.05 0.51 7.98 -51.93 -0.41 0.09 16 21 H 0.05 0.67 7.53 -51.93 -0.39 0.28 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.34 4.71 7.59 -39.29 -0.30 4.41 16 24 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 25 H 0.07 1.13 7.49 -51.93 -0.39 0.74 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 29 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 294.44 15.07 4.44 4.44 Total: -1.00 -30.47 294.44 -8.40 -38.87 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.88 Total: -1.10 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -1.38 Total: -21.35 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.10 Total: -38.38 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.47 -8.40 -38.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133238029.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.897 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds