Wall clock time and date at job start Sun Mar 29 2020 21:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46789 * 2 1 4 4 N 1.46899 * 109.46683 * 240.00551 * 2 1 3 5 5 C 1.46896 * 111.00433 * 84.99973 * 4 2 1 6 6 C 1.52995 * 109.47512 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47705 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47453 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00246 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99882 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99780 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00159 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.46934 * 89.99889 * 12 10 8 14 14 H 1.48498 * 109.47069 * 210.00204 * 12 10 8 15 15 H 1.48502 * 109.46930 * 330.00162 * 12 10 8 16 16 C 1.52994 * 109.47395 * 120.00382 * 2 1 3 17 17 C 1.53784 * 113.61184 * 282.76031 * 16 2 1 18 18 C 1.53957 * 87.01865 * 220.04744 * 17 16 2 19 19 C 1.53780 * 113.61542 * 185.15353 * 16 2 1 20 20 H 1.09005 * 109.46738 * 296.84738 * 1 2 3 21 21 H 1.08997 * 109.47544 * 56.84963 * 1 2 3 22 22 H 1.08996 * 109.47224 * 176.85435 * 1 2 3 23 23 H 1.00905 * 110.99726 * 208.94809 * 4 2 1 24 24 H 1.09002 * 109.47343 * 59.99632 * 5 4 2 25 25 H 1.09001 * 109.47051 * 299.99452 * 5 4 2 26 26 H 1.09005 * 109.47022 * 299.99655 * 6 5 4 27 27 H 1.09003 * 109.47600 * 59.99569 * 6 5 4 28 28 H 1.08997 * 109.46828 * 300.00345 * 7 6 5 29 29 H 1.09002 * 109.47117 * 59.99698 * 7 6 5 30 30 H 0.97000 * 119.99962 * 179.97438 * 11 10 8 31 31 H 1.09000 * 112.85482 * 53.95338 * 16 2 1 32 32 H 1.09002 * 113.61691 * 334.57070 * 17 16 2 33 33 H 1.09001 * 113.61573 * 105.47220 * 17 16 2 34 34 H 1.08998 * 113.53576 * 270.81357 * 18 17 16 35 35 H 1.09001 * 113.73794 * 139.94379 * 18 17 16 36 36 H 1.08995 * 113.61481 * 254.52782 * 19 16 2 37 37 H 1.09003 * 113.61210 * 25.43579 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5960 -0.5327 -3.5743 7 6 2.6608 0.4202 -4.7695 8 6 3.1674 -0.3237 -5.9782 9 1 3.4177 -1.3715 -5.9018 10 6 3.3113 0.3334 -7.1818 11 7 3.7529 -0.3159 -8.2368 12 14 2.8791 2.1460 -7.3140 13 1 4.0794 2.9647 -7.0069 14 1 2.4153 2.4450 -8.6926 15 1 1.7991 2.4690 -6.3473 16 6 2.0401 -0.7213 1.2491 17 6 1.9520 0.1265 2.5291 18 6 3.3239 -0.4568 2.9137 19 6 3.5685 -0.6682 1.4102 20 1 -0.3633 0.4641 0.9170 21 1 -0.3634 0.5619 -0.8604 22 1 -0.3633 -1.0261 -0.0564 23 1 2.9173 -1.1204 -1.0289 24 1 2.7588 1.0463 -2.1183 25 1 1.0870 0.6164 -2.5526 26 1 3.5916 -0.9260 -3.3684 27 1 1.9200 -1.3565 -3.8032 28 1 1.6652 0.8133 -4.9751 29 1 3.3367 1.2444 -4.5409 30 1 3.8538 0.1462 -9.0836 31 1 1.6240 -1.7227 1.3593 32 1 1.9706 1.2005 2.3437 33 1 1.1456 -0.1746 3.1977 34 1 3.2586 -1.3856 3.4802 35 1 3.9979 0.2696 3.3678 36 1 4.0651 -1.6099 1.1769 37 1 4.0299 0.1882 0.9183 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133238029.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:06 Heat of formation + Delta-G solvation = -26.787381 kcal Electronic energy + Delta-G solvation = -13889.126512 eV Core-core repulsion = 11665.077909 eV Total energy + Delta-G solvation = -2224.048603 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.26463 -37.44256 -35.46609 -33.70067 -31.07306 -28.17672 -26.49541 -26.19560 -23.88866 -22.00383 -21.56936 -20.24018 -18.90380 -17.16514 -16.53742 -16.23987 -16.04980 -15.58647 -15.02007 -14.70187 -14.12537 -13.68316 -13.60562 -13.34803 -13.30733 -12.85979 -12.71361 -12.63815 -12.45787 -12.10940 -11.80167 -11.62737 -11.49649 -11.33511 -11.29601 -11.03525 -10.86801 -10.76866 -9.32104 -8.29931 -6.34364 1.35062 1.37531 1.49896 2.36093 3.05169 3.16276 3.72010 3.75566 3.91931 4.02387 4.19798 4.26872 4.37882 4.43544 4.63865 4.68600 4.80938 4.85437 4.87970 4.90686 4.94956 5.03265 5.07835 5.09842 5.12435 5.15784 5.35117 5.42387 5.51500 5.59908 5.63657 5.66122 6.17927 6.29849 6.53364 6.73794 7.30275 8.87195 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054126 B = 0.005086 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.189798 B = 5503.982521 C = 5630.962290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.091 3.909 3 H 0.037 0.963 4 N -0.692 5.692 5 C 0.071 3.929 6 C -0.091 4.091 7 C -0.010 4.010 8 C -0.535 4.535 9 H 0.029 0.971 10 C 0.002 3.998 11 N -0.953 5.953 12 Si 0.954 3.046 13 H -0.265 1.265 14 H -0.282 1.282 15 H -0.247 1.247 16 C -0.109 4.109 17 C -0.128 4.128 18 C -0.135 4.135 19 C -0.147 4.147 20 H 0.071 0.929 21 H 0.041 0.959 22 H 0.055 0.945 23 H 0.342 0.658 24 H 0.028 0.972 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.267 0.733 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.219 3.489 23.007 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.019 4.019 3 H 0.055 0.945 4 N -0.323 5.323 5 C -0.058 4.058 6 C -0.129 4.129 7 C -0.048 4.048 8 C -0.573 4.573 9 H 0.047 0.953 10 C -0.194 4.194 11 N -0.594 5.594 12 Si 0.777 3.223 13 H -0.190 1.190 14 H -0.208 1.208 15 H -0.170 1.170 16 C -0.128 4.128 17 C -0.166 4.166 18 C -0.173 4.173 19 C -0.185 4.185 20 H 0.090 0.910 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.160 0.840 24 H 0.046 0.954 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.805 3.256 22.670 23.401 hybrid contribution 0.870 0.855 -0.667 1.390 sum -3.935 4.110 22.003 22.727 Atomic orbital electron populations 1.21746 0.94400 1.01940 1.01294 1.21596 0.96130 0.95294 0.88850 0.94480 1.60515 1.33665 1.33599 1.04555 1.21903 1.00063 0.93571 0.90283 1.21269 0.99736 0.98248 0.93622 1.19488 0.96237 0.95682 0.93377 1.21519 1.43551 0.97060 0.95143 0.95262 1.26072 0.94404 1.03854 0.95115 1.70080 1.48412 1.39094 1.01781 0.85598 0.79901 0.78940 0.77837 1.19013 1.20820 1.17031 1.22711 0.96083 1.00087 0.93873 1.22931 0.98024 0.99460 0.96228 1.22807 0.97269 1.01625 0.95570 1.22970 0.95953 1.01878 0.97705 0.91006 0.93987 0.92601 0.83951 0.95390 0.91550 0.93534 0.93353 0.96233 0.96362 0.92460 0.88825 0.90190 0.90467 0.89427 0.91036 0.91368 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.36 71.98 0.67 -2.24 16 2 C 0.09 2.04 2.35 44.92 0.11 2.14 16 3 H 0.04 0.87 7.71 -2.38 -0.02 0.85 16 4 N -0.69 -19.27 6.31 -491.58 -3.10 -22.37 16 5 C 0.07 2.31 5.48 86.30 0.47 2.78 16 6 C -0.09 -3.70 5.41 30.59 0.17 -3.54 16 7 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 8 C -0.53 -32.01 9.66 25.60 0.25 -31.76 16 9 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 10 C 0.00 0.12 5.47 84.65 0.46 0.58 16 11 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 12 Si 0.95 45.14 27.47 68.60 1.88 47.02 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 15 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 16 C -0.11 -1.98 3.20 -10.27 -0.03 -2.01 16 17 C -0.13 -1.88 7.44 31.18 0.23 -1.65 16 18 C -0.14 -1.91 8.09 31.18 0.25 -1.66 16 19 C -0.15 -2.59 6.75 31.12 0.21 -2.38 16 20 H 0.07 1.23 7.98 -2.38 -0.02 1.21 16 21 H 0.04 0.98 7.53 -2.39 -0.02 0.97 16 22 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.34 9.15 7.59 -89.69 -0.68 8.47 16 24 H 0.03 0.88 8.06 -2.39 -0.02 0.86 16 25 H 0.07 2.16 7.49 -2.39 -0.02 2.15 16 26 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.02 0.92 7.20 -2.39 -0.02 0.91 16 29 H 0.02 0.84 7.57 -2.39 -0.02 0.83 16 30 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 1.18 8.04 -2.39 -0.02 1.16 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.36 8.10 -2.39 -0.02 1.34 16 Total: -1.00 -65.60 294.44 2.26 -63.34 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.27 Total: 13.00 kcal Atomic # 6 Polarization: -43.00 SS G_CDS: 2.91 Total: -40.09 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.80 Total: -83.28 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -65.60 2.26 -63.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133238029.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.551 kcal (2) G-P(sol) polarization free energy of solvation -65.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds