Wall clock time and date at job start Sun Mar 29 2020 21:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.52316 * 2 1 4 4 C 1.53123 * 109.52142 * 239.81187 * 2 1 3 5 5 C 1.53033 * 109.27961 * 297.74995 * 4 2 1 6 6 N 1.46845 * 109.52284 * 300.81973 * 5 4 2 7 7 C 1.46898 * 111.00224 * 185.84065 * 6 5 4 8 8 C 1.52999 * 109.47219 * 45.79037 * 7 6 5 9 9 C 1.50695 * 109.47057 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00538 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99661 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00186 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00030 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00044 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00037 * 13 11 9 17 17 C 1.46854 * 111.19955 * 61.74290 * 6 5 4 18 18 C 1.53038 * 109.51869 * 298.25762 * 17 6 5 19 19 H 1.08998 * 109.50859 * 299.19135 * 18 17 6 20 20 C 1.53000 * 109.50084 * 179.11853 * 18 17 6 21 21 H 1.08998 * 109.47076 * 299.87027 * 1 2 3 22 22 H 1.08998 * 109.47523 * 59.86710 * 1 2 3 23 23 H 1.09007 * 109.47312 * 179.86955 * 1 2 3 24 24 H 1.08998 * 109.49995 * 57.69105 * 4 2 1 25 25 H 1.08997 * 109.50109 * 177.80259 * 4 2 1 26 26 H 1.08992 * 109.46189 * 180.80864 * 5 4 2 27 27 H 1.08998 * 109.46599 * 60.83542 * 5 4 2 28 28 H 1.09002 * 109.47296 * 285.79025 * 7 6 5 29 29 H 1.08998 * 109.47102 * 165.79042 * 7 6 5 30 30 H 1.09002 * 109.46997 * 59.99804 * 8 7 6 31 31 H 1.09000 * 109.46625 * 300.00230 * 8 7 6 32 32 H 0.97001 * 119.99697 * 359.97438 * 12 11 9 33 33 H 1.08997 * 109.45977 * 58.27249 * 17 6 5 34 34 H 1.08996 * 109.46189 * 178.25726 * 17 6 5 35 35 H 1.08997 * 109.47399 * 59.99762 * 20 18 17 36 36 H 1.08996 * 109.47772 * 180.02562 * 20 18 17 37 37 H 1.09007 * 109.47136 * 299.99996 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7257 -1.2475 5 6 1.5765 -2.1832 -1.2106 6 7 2.0924 -2.8324 0.0013 7 6 1.7823 -4.2683 0.0021 8 6 2.1079 -4.8611 -1.3703 9 6 1.7892 -6.3339 -1.3697 10 1 1.3944 -6.8007 -0.4794 11 6 2.0017 -7.0857 -2.5058 12 7 2.4821 -6.5172 -3.5902 13 14 1.6074 -8.9116 -2.5049 14 1 0.2003 -9.1144 -2.9343 15 1 1.7906 -9.4569 -1.1359 16 1 2.5177 -9.6151 -3.4438 17 6 1.5766 -2.1820 1.2128 18 6 2.0417 -0.7244 1.2481 19 1 3.1310 -0.6903 1.2685 20 6 1.4859 -0.0411 2.4992 21 1 -0.3633 0.5118 0.8911 22 1 -0.3634 0.5159 -0.8887 23 1 -0.3634 -1.0277 -0.0023 24 1 1.6456 -0.2398 -2.1392 25 1 3.1309 -0.6916 -1.2672 26 1 1.9513 -2.7063 -2.0903 27 1 0.4871 -2.2168 -1.2049 28 1 0.7235 -4.4112 0.2177 29 1 2.3792 -4.7684 0.7648 30 1 3.1668 -4.7181 -1.5859 31 1 1.5111 -4.3608 -2.1329 32 1 2.6865 -5.5690 -3.5907 33 1 0.4871 -2.2155 1.2071 34 1 1.9515 -2.7041 2.0930 35 1 1.8476 -0.5593 3.3873 36 1 1.8170 0.9970 2.5237 37 1 0.3966 -0.0742 2.4777 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135085461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:07 Heat of formation + Delta-G solvation = -26.071850 kcal Electronic energy + Delta-G solvation = -14674.276368 eV Core-core repulsion = 12450.258793 eV Total energy + Delta-G solvation = -2224.017575 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.45559 -35.31265 -32.99705 -31.99125 -29.37094 -27.77875 -25.81961 -24.32284 -22.57830 -22.14990 -19.86654 -18.14562 -16.79016 -15.74023 -15.00429 -14.41331 -14.26317 -14.22915 -13.69137 -13.27127 -12.85117 -12.45305 -12.22110 -12.05682 -11.73222 -11.68553 -11.27588 -11.11039 -10.85014 -10.77157 -10.42857 -10.25583 -10.09718 -10.01492 -9.86489 -9.43872 -8.54540 -8.28781 -7.66119 -6.34281 -4.02650 3.44721 3.48823 3.64592 4.40099 4.59710 4.80034 4.92506 5.00590 5.27216 5.43545 5.50490 5.54188 5.60726 5.65075 5.73808 5.80030 5.85671 5.93131 5.97562 6.06063 6.14791 6.20777 6.27040 6.32878 6.39580 6.46746 6.57464 6.63123 6.82596 7.33036 7.49125 7.71380 7.78776 8.27131 8.48787 8.91106 9.69406 11.06820 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058690 B = 0.006485 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.967808 B = 4316.416482 C = 4547.374828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.087 4.087 3 H 0.065 0.935 4 C -0.112 4.112 5 C 0.050 3.950 6 N -0.541 5.541 7 C 0.070 3.930 8 C 0.008 3.992 9 C -0.602 4.602 10 H 0.048 0.952 11 C 0.015 3.985 12 N -0.913 5.913 13 Si 1.072 2.928 14 H -0.288 1.288 15 H -0.289 1.289 16 H -0.284 1.284 17 C 0.060 3.940 18 C -0.084 4.084 19 H 0.075 0.925 20 C -0.147 4.147 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.028 0.972 28 H 0.019 0.981 29 H 0.062 0.938 30 H 0.016 0.984 31 H 0.011 0.989 32 H 0.269 0.731 33 H 0.029 0.971 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.799 12.766 8.366 15.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.105 4.105 3 H 0.083 0.917 4 C -0.150 4.150 5 C -0.077 4.077 6 N -0.265 5.265 7 C -0.057 4.057 8 C -0.029 4.029 9 C -0.641 4.641 10 H 0.066 0.934 11 C -0.189 4.189 12 N -0.550 5.550 13 Si 0.900 3.100 14 H -0.215 1.215 15 H -0.215 1.215 16 H -0.210 1.210 17 C -0.068 4.068 18 C -0.103 4.103 19 H 0.094 0.906 20 C -0.205 4.205 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.046 0.954 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.034 0.966 31 H 0.029 0.971 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.274 11.440 7.429 13.829 hybrid contribution -0.943 1.261 1.016 1.874 sum -3.216 12.702 8.444 15.588 Atomic orbital electron populations 1.21992 0.95805 1.02070 1.01111 1.21155 0.95518 0.98670 0.95180 0.91695 1.21642 1.01305 0.95288 0.96769 1.22180 0.96970 0.93979 0.94606 1.62027 1.59407 1.03921 1.01165 1.22147 0.97431 0.84872 1.01217 1.19367 0.96580 0.95947 0.91017 1.22042 1.47381 0.94036 1.00655 0.93403 1.25838 0.94311 1.06321 0.92381 1.70750 1.40963 1.14059 1.29195 0.83505 0.76513 0.74537 0.75402 1.21527 1.21499 1.20961 1.22109 0.96933 0.94027 0.93779 1.21160 1.00717 0.94354 0.94066 0.90627 1.21858 1.01130 1.00062 0.97417 0.92736 0.93057 0.92324 0.92026 0.91373 0.89575 0.95363 0.96262 0.91908 0.96619 0.97082 0.92065 0.95291 0.91528 0.92835 0.92826 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.20 37.15 0.30 -1.52 16 2 C -0.09 -1.09 2.77 -90.50 -0.25 -1.34 16 3 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.11 -1.62 5.60 -26.65 -0.15 -1.77 16 5 C 0.05 0.91 4.60 -3.84 -0.02 0.89 16 6 N -0.54 -10.24 4.81 -234.68 -1.13 -11.37 16 7 C 0.07 1.56 5.21 -3.83 -0.02 1.54 16 8 C 0.01 0.21 3.53 -27.89 -0.10 0.11 16 9 C -0.60 -17.59 9.11 -34.44 -0.31 -17.90 16 10 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 11 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 12 N -0.91 -28.44 13.65 55.43 0.76 -27.68 16 13 Si 1.07 25.77 29.90 -169.99 -5.08 20.69 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 17 C 0.06 0.93 4.46 -3.83 -0.02 0.92 16 18 C -0.08 -1.09 2.66 -90.54 -0.24 -1.33 16 19 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 20 C -0.15 -1.54 8.79 37.16 0.33 -1.22 16 21 H 0.05 0.57 6.39 -51.93 -0.33 0.24 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.80 4.92 -51.93 -0.26 0.54 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.09 1.75 5.81 -51.93 -0.30 1.45 16 27 H 0.03 0.51 6.51 -51.93 -0.34 0.17 16 28 H 0.02 0.43 8.08 -51.93 -0.42 0.01 16 29 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 31 H 0.01 0.30 6.07 -51.93 -0.32 -0.01 16 32 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16 33 H 0.03 0.46 6.51 -51.93 -0.34 0.12 16 34 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.57 6.38 -51.93 -0.33 0.24 16 LS Contribution 277.00 15.07 4.17 4.17 Total: -1.00 -30.48 277.00 -8.20 -38.69 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -6.35 Total: -3.21 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -0.57 Total: -21.28 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: -0.37 Total: -39.05 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.48 -8.20 -38.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135085461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.613 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds