Wall clock time and date at job start Sun Mar 29 2020 21:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.52316 * 2 1 4 4 C 1.53123 * 109.52142 * 239.81187 * 2 1 3 5 5 C 1.53033 * 109.27961 * 297.74995 * 4 2 1 6 6 N 1.46845 * 109.52284 * 300.81973 * 5 4 2 7 7 C 1.46898 * 111.00224 * 185.84065 * 6 5 4 8 8 C 1.52999 * 109.47219 * 45.79037 * 7 6 5 9 9 C 1.50695 * 109.47057 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00538 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99661 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00186 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00030 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00044 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00037 * 13 11 9 17 17 C 1.46854 * 111.19955 * 61.74290 * 6 5 4 18 18 C 1.53038 * 109.51869 * 298.25762 * 17 6 5 19 19 H 1.08998 * 109.50859 * 299.19135 * 18 17 6 20 20 C 1.53000 * 109.50084 * 179.11853 * 18 17 6 21 21 H 1.08998 * 109.47076 * 299.87027 * 1 2 3 22 22 H 1.08998 * 109.47523 * 59.86710 * 1 2 3 23 23 H 1.09007 * 109.47312 * 179.86955 * 1 2 3 24 24 H 1.08998 * 109.49995 * 57.69105 * 4 2 1 25 25 H 1.08997 * 109.50109 * 177.80259 * 4 2 1 26 26 H 1.08992 * 109.46189 * 180.80864 * 5 4 2 27 27 H 1.08998 * 109.46599 * 60.83542 * 5 4 2 28 28 H 1.09002 * 109.47296 * 285.79025 * 7 6 5 29 29 H 1.08998 * 109.47102 * 165.79042 * 7 6 5 30 30 H 1.09002 * 109.46997 * 59.99804 * 8 7 6 31 31 H 1.09000 * 109.46625 * 300.00230 * 8 7 6 32 32 H 0.97001 * 119.99697 * 359.97438 * 12 11 9 33 33 H 1.08997 * 109.45977 * 58.27249 * 17 6 5 34 34 H 1.08996 * 109.46189 * 178.25726 * 17 6 5 35 35 H 1.08997 * 109.47399 * 59.99762 * 20 18 17 36 36 H 1.08996 * 109.47772 * 180.02562 * 20 18 17 37 37 H 1.09007 * 109.47136 * 299.99996 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7257 -1.2475 5 6 1.5765 -2.1832 -1.2106 6 7 2.0924 -2.8324 0.0013 7 6 1.7823 -4.2683 0.0021 8 6 2.1079 -4.8611 -1.3703 9 6 1.7892 -6.3339 -1.3697 10 1 1.3944 -6.8007 -0.4794 11 6 2.0017 -7.0857 -2.5058 12 7 2.4821 -6.5172 -3.5902 13 14 1.6074 -8.9116 -2.5049 14 1 0.2003 -9.1144 -2.9343 15 1 1.7906 -9.4569 -1.1359 16 1 2.5177 -9.6151 -3.4438 17 6 1.5766 -2.1820 1.2128 18 6 2.0417 -0.7244 1.2481 19 1 3.1310 -0.6903 1.2685 20 6 1.4859 -0.0411 2.4992 21 1 -0.3633 0.5118 0.8911 22 1 -0.3634 0.5159 -0.8887 23 1 -0.3634 -1.0277 -0.0023 24 1 1.6456 -0.2398 -2.1392 25 1 3.1309 -0.6916 -1.2672 26 1 1.9513 -2.7063 -2.0903 27 1 0.4871 -2.2168 -1.2049 28 1 0.7235 -4.4112 0.2177 29 1 2.3792 -4.7684 0.7648 30 1 3.1668 -4.7181 -1.5859 31 1 1.5111 -4.3608 -2.1329 32 1 2.6865 -5.5690 -3.5907 33 1 0.4871 -2.2155 1.2071 34 1 1.9515 -2.7041 2.0930 35 1 1.8476 -0.5593 3.3873 36 1 1.8170 0.9970 2.5237 37 1 0.3966 -0.0742 2.4777 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135085461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:07 Heat of formation + Delta-G solvation = -45.031642 kcal Electronic energy + Delta-G solvation = -14675.098526 eV Core-core repulsion = 12450.258793 eV Total energy + Delta-G solvation = -2224.839733 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.73718 -36.93486 -35.02137 -33.13532 -31.23850 -28.93437 -27.15165 -26.03576 -24.38577 -23.39767 -21.54912 -19.28561 -18.96527 -17.12736 -16.25163 -15.93814 -15.76244 -15.63941 -15.47947 -14.61538 -14.47250 -13.98279 -13.59165 -13.50716 -12.99724 -12.86164 -12.72431 -12.59525 -12.39773 -12.09789 -11.96630 -11.94466 -11.79784 -11.31632 -11.06199 -11.00491 -10.73455 -10.54918 -9.21148 -8.72834 -6.43088 1.50772 1.60571 1.78676 2.54043 2.98934 3.13075 3.73561 3.81797 3.91631 4.13422 4.28702 4.32922 4.39365 4.45115 4.50685 4.64376 4.67434 4.74691 4.79491 4.81453 4.85249 4.95400 5.07613 5.11035 5.18749 5.21870 5.25323 5.34976 5.39309 5.41439 5.58094 5.86897 6.13017 6.18208 6.26098 6.54653 7.39316 8.68154 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058690 B = 0.006485 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.967808 B = 4316.416482 C = 4547.374828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 H 0.090 0.910 4 C -0.107 4.107 5 C 0.052 3.948 6 N -0.548 5.548 7 C 0.084 3.916 8 C 0.016 3.984 9 C -0.623 4.623 10 H 0.050 0.950 11 C -0.038 4.038 12 N -0.935 5.935 13 Si 1.123 2.877 14 H -0.271 1.271 15 H -0.269 1.269 16 H -0.281 1.281 17 C 0.058 3.942 18 C -0.080 4.080 19 H 0.069 0.931 20 C -0.141 4.141 21 H 0.073 0.927 22 H 0.059 0.941 23 H 0.035 0.965 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.024 0.976 28 H 0.016 0.984 29 H 0.061 0.939 30 H -0.011 1.011 31 H -0.003 1.003 32 H 0.255 0.745 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 13.659 9.713 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 H 0.108 0.892 4 C -0.145 4.145 5 C -0.076 4.076 6 N -0.273 5.273 7 C -0.043 4.043 8 C -0.021 4.021 9 C -0.661 4.661 10 H 0.068 0.932 11 C -0.235 4.235 12 N -0.573 5.573 13 Si 0.943 3.057 14 H -0.197 1.197 15 H -0.194 1.194 16 H -0.206 1.206 17 C -0.070 4.070 18 C -0.099 4.099 19 H 0.088 0.912 20 C -0.198 4.198 21 H 0.092 0.908 22 H 0.078 0.922 23 H 0.054 0.946 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.034 0.966 29 H 0.079 0.921 30 H 0.007 0.993 31 H 0.015 0.985 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.967 12.370 8.796 15.465 hybrid contribution -0.715 1.030 0.595 1.388 sum -3.682 13.400 9.391 16.772 Atomic orbital electron populations 1.21963 0.95158 1.01000 1.02540 1.21177 0.95989 0.99461 0.93544 0.89189 1.21624 1.01055 0.92900 0.98914 1.22134 0.96573 0.95980 0.92887 1.62017 1.59993 1.02277 1.02978 1.21830 0.96983 0.87234 0.98286 1.19217 0.94481 0.95226 0.93214 1.22472 1.47231 0.95486 1.00887 0.93199 1.27503 0.93246 1.10922 0.91811 1.70888 1.42731 1.13366 1.30278 0.82875 0.77200 0.69030 0.76572 1.19660 1.19356 1.20606 1.22250 0.96987 0.95767 0.91979 1.21154 1.00452 0.92505 0.95805 0.91231 1.21809 1.01295 1.00799 0.95920 0.90801 0.92226 0.94559 0.90542 0.91870 0.93068 0.95767 0.96606 0.92099 0.99283 0.98490 0.93600 0.95200 0.91288 0.92404 0.90984 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.20 71.98 0.59 -2.60 16 2 C -0.08 -1.88 2.77 -10.71 -0.03 -1.91 16 3 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 4 C -0.11 -3.00 5.60 30.65 0.17 -2.83 16 5 C 0.05 1.92 4.60 86.32 0.40 2.31 16 6 N -0.55 -21.02 4.81 -896.39 -4.31 -25.33 16 7 C 0.08 3.83 5.21 86.30 0.45 4.28 16 8 C 0.02 0.87 3.53 29.85 0.11 0.98 16 9 C -0.62 -37.06 9.11 25.60 0.23 -36.83 16 10 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 11 C -0.04 -2.24 5.46 84.65 0.46 -1.77 16 12 N -0.94 -59.64 13.65 21.45 0.29 -59.35 16 13 Si 1.12 51.41 29.90 68.60 2.05 53.46 16 14 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 17 C 0.06 1.75 4.46 86.32 0.38 2.13 16 18 C -0.08 -1.90 2.66 -10.74 -0.03 -1.93 16 19 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 20 C -0.14 -2.48 8.79 71.98 0.63 -1.84 16 21 H 0.07 1.29 6.39 -2.39 -0.02 1.28 16 22 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.04 0.93 4.92 -2.38 -0.01 0.92 16 24 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 2.21 5.81 -2.39 -0.01 2.19 16 27 H 0.02 0.90 6.51 -2.39 -0.02 0.88 16 28 H 0.02 0.72 8.08 -2.39 -0.02 0.70 16 29 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 30 H -0.01 -0.67 8.01 -2.39 -0.02 -0.68 16 31 H 0.00 -0.17 6.07 -2.39 -0.01 -0.19 16 32 H 0.25 16.52 7.22 -92.71 -0.67 15.85 16 33 H 0.03 0.91 6.51 -2.39 -0.02 0.89 16 34 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.03 6.38 -2.38 -0.02 1.01 16 Total: -1.00 -66.54 277.00 2.52 -64.02 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.11 Total: 7.20 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 3.37 Total: -40.00 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -4.01 Total: -84.68 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.05 Total: 53.46 kcal Total: -66.54 2.52 -64.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135085461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.990 kcal (2) G-P(sol) polarization free energy of solvation -66.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds