Wall clock time and date at job start Sun Mar 29 2020 21:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.50172 * 2 1 4 4 C 1.53039 * 109.53960 * 120.09996 * 2 1 3 5 5 N 1.46845 * 109.52770 * 179.14226 * 4 2 1 6 6 C 1.46896 * 111.00239 * 174.16103 * 5 4 2 7 7 C 1.52997 * 109.47114 * 190.25334 * 6 5 4 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99515 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00176 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99883 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47293 * 89.99746 * 12 10 8 14 14 H 1.48504 * 109.47104 * 209.99992 * 12 10 8 15 15 H 1.48495 * 109.47249 * 329.99739 * 12 10 8 16 16 C 1.46850 * 111.19675 * 298.25863 * 5 4 2 17 17 C 1.53034 * 109.52635 * 61.73851 * 16 5 4 18 18 C 1.53120 * 109.27934 * 300.82407 * 17 16 5 19 19 H 1.08993 * 109.52457 * 297.74580 * 18 17 16 20 20 C 1.53000 * 109.52593 * 177.61843 * 18 17 16 21 21 H 1.09002 * 109.46979 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47152 * 300.07255 * 1 2 3 23 23 H 1.08991 * 109.47330 * 60.07851 * 1 2 3 24 24 H 1.09004 * 109.46072 * 59.12048 * 4 2 1 25 25 H 1.09000 * 109.46131 * 299.15870 * 4 2 1 26 26 H 1.09001 * 109.47271 * 70.25602 * 6 5 4 27 27 H 1.09004 * 109.47041 * 310.25449 * 6 5 4 28 28 H 1.09001 * 109.46832 * 59.99999 * 7 6 5 29 29 H 1.09000 * 109.47611 * 300.00296 * 7 6 5 30 30 H 0.97004 * 119.99507 * 180.02562 * 11 10 8 31 31 H 1.08995 * 109.46650 * 181.75876 * 16 5 4 32 32 H 1.09004 * 109.46088 * 301.72837 * 16 5 4 33 33 H 1.09003 * 109.49949 * 60.76221 * 17 16 5 34 34 H 1.08991 * 109.50897 * 180.88093 * 17 16 5 35 35 H 1.08999 * 109.46676 * 59.99976 * 20 18 17 36 36 H 1.08998 * 109.47304 * 180.02562 * 20 18 17 37 37 H 1.08999 * 109.47211 * 300.00310 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0418 -0.7233 1.2478 5 7 3.5101 -0.7411 1.2372 6 6 4.0388 -1.3047 2.4864 7 6 5.5502 -1.0751 2.5500 8 6 6.0925 -1.6528 3.8319 9 1 5.4259 -2.1358 4.5311 10 6 7.4396 -1.5648 4.1122 11 7 8.2512 -0.9762 3.2609 12 14 8.1119 -2.2814 5.7008 13 1 8.5039 -3.6964 5.4786 14 1 9.2992 -1.5008 6.1325 15 1 7.0673 -2.2168 6.7542 16 6 4.0239 -1.4715 0.0714 17 6 3.5712 -0.7706 -1.2115 18 6 2.0412 -0.7234 -1.2490 19 1 1.6458 -1.7389 -1.2693 20 6 1.5833 0.0286 -2.5003 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5149 0.8893 23 1 -0.3633 0.5126 -0.8906 24 1 1.6662 -1.7466 1.2541 25 1 1.6914 -0.2025 2.1389 26 1 3.8322 -2.3745 2.5185 27 1 3.5611 -0.8167 3.3360 28 1 5.7568 -0.0054 2.5179 29 1 6.0279 -1.5631 1.7004 30 1 9.1990 -0.9146 3.4580 31 1 5.1129 -1.4942 0.1080 32 1 3.6389 -2.4913 0.0832 33 1 3.9673 0.2447 -1.2306 34 1 3.9396 -1.3217 -2.0767 35 1 1.9524 -0.4849 -3.3881 36 1 0.4942 0.0621 -2.5259 37 1 1.9773 1.0447 -2.4781 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135085478.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:09 Heat of formation + Delta-G solvation = -28.862489 kcal Electronic energy + Delta-G solvation = -14438.113368 eV Core-core repulsion = 12213.974782 eV Total energy + Delta-G solvation = -2224.138586 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.09228 -35.21133 -32.83659 -31.95166 -29.89595 -27.77071 -25.99255 -24.03008 -21.99064 -21.80311 -19.68629 -19.37442 -16.42463 -14.97528 -14.80369 -14.48136 -14.43271 -14.30928 -13.75680 -13.19141 -12.60727 -12.44577 -12.06072 -11.91624 -11.81073 -11.60765 -11.45606 -10.99913 -10.90425 -10.74285 -10.55890 -10.42529 -10.05265 -9.93642 -9.71815 -9.23299 -9.07510 -8.29711 -7.61842 -5.96699 -3.98916 3.33814 3.39907 3.43407 4.41135 4.58053 4.84395 4.95107 4.99866 5.30111 5.39101 5.53298 5.61993 5.66869 5.72110 5.74173 5.84373 5.90576 5.92347 6.01998 6.11136 6.16090 6.23504 6.33637 6.40307 6.43045 6.53939 6.61173 6.70477 7.02785 7.59449 7.67202 7.86427 7.95747 8.13306 8.47498 9.08488 9.64521 11.14743 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.062795 B = 0.006056 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.787503 B = 4622.243487 C = 4921.144635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 H 0.077 0.923 4 C 0.061 3.939 5 N -0.539 5.539 6 C 0.064 3.936 7 C 0.028 3.972 8 C -0.521 4.521 9 H 0.053 0.947 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.054 3.946 17 C -0.111 4.111 18 C -0.088 4.088 19 H 0.062 0.938 20 C -0.146 4.146 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.023 0.977 25 H 0.068 0.932 26 H 0.017 0.983 27 H 0.059 0.941 28 H 0.024 0.976 29 H 0.017 0.983 30 H 0.260 0.740 31 H 0.085 0.915 32 H 0.022 0.978 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.085 0.901 -8.857 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 H 0.095 0.905 4 C -0.068 4.068 5 N -0.263 5.263 6 C -0.063 4.063 7 C -0.010 4.010 8 C -0.560 4.560 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.074 4.074 17 C -0.149 4.149 18 C -0.107 4.107 19 H 0.080 0.920 20 C -0.203 4.203 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.087 0.913 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.735 1.431 -8.907 15.606 hybrid contribution 0.199 -1.279 0.976 1.621 sum -12.536 0.152 -7.931 14.835 Atomic orbital electron populations 1.21844 0.95631 1.01445 1.01486 1.21193 0.94467 1.00382 0.94249 0.90472 1.22092 0.89050 0.98025 0.97621 1.61989 1.06056 1.54827 1.03442 1.22310 0.99701 0.95452 0.88852 1.19100 0.87519 0.97776 0.96558 1.21210 0.92952 1.37124 1.04743 0.92846 1.24990 0.97116 0.95407 0.96791 1.69980 1.03945 1.43580 1.35794 0.86601 0.78566 0.79017 0.83846 1.20731 1.21200 1.19903 1.22098 1.01307 0.94033 0.89923 1.21657 0.94585 1.01687 0.96952 1.21206 0.96049 0.98951 0.94450 0.91958 1.21860 1.00740 1.00447 0.97245 0.93092 0.92799 0.92523 0.95880 0.91333 0.96432 0.92221 0.95729 0.96494 0.93031 0.89631 0.95938 0.91176 0.92122 0.93071 0.92809 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.90 37.16 0.33 -1.22 16 2 C -0.08 -1.10 2.38 -90.54 -0.22 -1.32 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.06 0.95 4.74 -3.83 -0.02 0.93 16 5 N -0.54 -10.26 4.65 -234.67 -1.09 -11.35 16 6 C 0.06 1.40 4.90 -3.83 -0.02 1.38 16 7 C 0.03 0.74 4.91 -27.88 -0.14 0.60 16 8 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 9 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 12 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 C 0.05 0.96 5.29 -3.83 -0.02 0.94 16 17 C -0.11 -1.59 5.38 -26.65 -0.14 -1.74 16 18 C -0.09 -1.10 2.29 -90.49 -0.21 -1.31 16 19 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 20 C -0.15 -1.51 8.90 37.16 0.33 -1.18 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.53 6.51 -51.93 -0.34 0.19 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 1.06 8.01 -51.93 -0.42 0.64 16 26 H 0.02 0.39 8.12 -51.93 -0.42 -0.04 16 27 H 0.06 1.30 7.98 -51.93 -0.41 0.88 16 28 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.02 0.47 6.44 -51.93 -0.33 0.14 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.09 1.70 6.22 -51.93 -0.32 1.38 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.50 6.52 -51.93 -0.34 0.16 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 286.48 15.07 4.32 4.32 Total: -1.00 -29.91 286.48 -8.35 -38.25 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -6.78 Total: -4.92 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -0.51 Total: -16.67 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: -0.36 Total: -37.87 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.91 -8.35 -38.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135085478.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.392 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds