Wall clock time and date at job start Sun Mar 29 2020 21:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.50172 * 2 1 4 4 C 1.53039 * 109.53960 * 120.09996 * 2 1 3 5 5 N 1.46845 * 109.52770 * 179.14226 * 4 2 1 6 6 C 1.46896 * 111.00239 * 174.16103 * 5 4 2 7 7 C 1.52997 * 109.47114 * 190.25334 * 6 5 4 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99515 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00176 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99883 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47293 * 89.99746 * 12 10 8 14 14 H 1.48504 * 109.47104 * 209.99992 * 12 10 8 15 15 H 1.48495 * 109.47249 * 329.99739 * 12 10 8 16 16 C 1.46850 * 111.19675 * 298.25863 * 5 4 2 17 17 C 1.53034 * 109.52635 * 61.73851 * 16 5 4 18 18 C 1.53120 * 109.27934 * 300.82407 * 17 16 5 19 19 H 1.08993 * 109.52457 * 297.74580 * 18 17 16 20 20 C 1.53000 * 109.52593 * 177.61843 * 18 17 16 21 21 H 1.09002 * 109.46979 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47152 * 300.07255 * 1 2 3 23 23 H 1.08991 * 109.47330 * 60.07851 * 1 2 3 24 24 H 1.09004 * 109.46072 * 59.12048 * 4 2 1 25 25 H 1.09000 * 109.46131 * 299.15870 * 4 2 1 26 26 H 1.09001 * 109.47271 * 70.25602 * 6 5 4 27 27 H 1.09004 * 109.47041 * 310.25449 * 6 5 4 28 28 H 1.09001 * 109.46832 * 59.99999 * 7 6 5 29 29 H 1.09000 * 109.47611 * 300.00296 * 7 6 5 30 30 H 0.97004 * 119.99507 * 180.02562 * 11 10 8 31 31 H 1.08995 * 109.46650 * 181.75876 * 16 5 4 32 32 H 1.09004 * 109.46088 * 301.72837 * 16 5 4 33 33 H 1.09003 * 109.49949 * 60.76221 * 17 16 5 34 34 H 1.08991 * 109.50897 * 180.88093 * 17 16 5 35 35 H 1.08999 * 109.46676 * 59.99976 * 20 18 17 36 36 H 1.08998 * 109.47304 * 180.02562 * 20 18 17 37 37 H 1.08999 * 109.47211 * 300.00310 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0418 -0.7233 1.2478 5 7 3.5101 -0.7411 1.2372 6 6 4.0388 -1.3047 2.4864 7 6 5.5502 -1.0751 2.5500 8 6 6.0925 -1.6528 3.8319 9 1 5.4259 -2.1358 4.5311 10 6 7.4396 -1.5648 4.1122 11 7 8.2512 -0.9762 3.2609 12 14 8.1119 -2.2814 5.7008 13 1 8.5039 -3.6964 5.4786 14 1 9.2992 -1.5008 6.1325 15 1 7.0673 -2.2168 6.7542 16 6 4.0239 -1.4715 0.0714 17 6 3.5712 -0.7706 -1.2115 18 6 2.0412 -0.7234 -1.2490 19 1 1.6458 -1.7389 -1.2693 20 6 1.5833 0.0286 -2.5003 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5149 0.8893 23 1 -0.3633 0.5126 -0.8906 24 1 1.6662 -1.7466 1.2541 25 1 1.6914 -0.2025 2.1389 26 1 3.8322 -2.3745 2.5185 27 1 3.5611 -0.8167 3.3360 28 1 5.7568 -0.0054 2.5179 29 1 6.0279 -1.5631 1.7004 30 1 9.1990 -0.9146 3.4580 31 1 5.1129 -1.4942 0.1080 32 1 3.6389 -2.4913 0.0832 33 1 3.9673 0.2447 -1.2306 34 1 3.9396 -1.3217 -2.0767 35 1 1.9524 -0.4849 -3.3881 36 1 0.4942 0.0621 -2.5259 37 1 1.9773 1.0447 -2.4781 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135085478.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:09 Heat of formation + Delta-G solvation = -46.955156 kcal Electronic energy + Delta-G solvation = -14438.897925 eV Core-core repulsion = 12213.974782 eV Total energy + Delta-G solvation = -2224.923143 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.36759 -36.71122 -34.89247 -33.07604 -31.73124 -29.04540 -27.37183 -25.76356 -23.46921 -23.07544 -21.39086 -20.48783 -18.60503 -16.59033 -16.44056 -16.15643 -15.60851 -15.46765 -15.06070 -14.62380 -14.27971 -13.90621 -13.51225 -13.35125 -12.89319 -12.79476 -12.73092 -12.66083 -12.54278 -12.35724 -11.89487 -11.87450 -11.60331 -11.41325 -11.28525 -10.95854 -10.86763 -10.53352 -9.16174 -8.20912 -6.32764 1.39406 1.41376 1.52608 2.39715 3.07803 3.12249 3.80287 3.87398 3.91632 4.16376 4.36000 4.46718 4.50364 4.54097 4.64990 4.70645 4.76095 4.85109 4.86789 4.92753 4.94933 5.05997 5.11903 5.17095 5.25802 5.29019 5.35644 5.42927 5.52652 5.61804 5.66462 5.78781 6.11554 6.34005 6.37083 6.84214 7.36456 8.91429 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.062795 B = 0.006056 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.787503 B = 4622.243487 C = 4921.144635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 H 0.067 0.933 4 C 0.059 3.941 5 N -0.552 5.552 6 C 0.079 3.921 7 C 0.037 3.963 8 C -0.546 4.546 9 H 0.059 0.941 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.968 3.032 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.263 1.263 16 C 0.054 3.946 17 C -0.105 4.105 18 C -0.085 4.085 19 H 0.067 0.933 20 C -0.140 4.140 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.073 0.927 24 H 0.027 0.973 25 H 0.069 0.931 26 H 0.016 0.984 27 H 0.062 0.938 28 H -0.009 1.009 29 H -0.006 1.006 30 H 0.264 0.736 31 H 0.052 0.948 32 H 0.025 0.975 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.673 0.461 -8.925 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 H 0.085 0.915 4 C -0.069 4.069 5 N -0.276 5.276 6 C -0.048 4.048 7 C 0.000 4.000 8 C -0.585 4.585 9 H 0.078 0.922 10 C -0.196 4.196 11 N -0.572 5.572 12 Si 0.792 3.208 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.187 1.187 16 C -0.074 4.074 17 C -0.143 4.143 18 C -0.103 4.103 19 H 0.085 0.915 20 C -0.197 4.197 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.046 0.954 25 H 0.088 0.912 26 H 0.035 0.965 27 H 0.080 0.920 28 H 0.009 0.991 29 H 0.012 0.988 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.348 0.992 -8.987 16.959 hybrid contribution 0.708 -1.125 0.964 1.642 sum -13.639 -0.133 -8.023 15.824 Atomic orbital electron populations 1.21794 0.93168 1.02178 1.02598 1.21179 0.96397 0.99313 0.93050 0.91497 1.22220 0.86499 0.98758 0.99411 1.61930 1.08513 1.54783 1.02422 1.21956 0.96574 0.95522 0.90775 1.18918 0.90819 0.95052 0.95245 1.21630 0.93718 1.37544 1.05597 0.92242 1.25981 0.97398 0.95552 1.00713 1.70121 1.04422 1.44654 1.38024 0.85403 0.77953 0.78364 0.79048 1.19688 1.20586 1.18690 1.22086 0.99350 0.94712 0.91212 1.21633 0.96455 1.00769 0.95460 1.21194 0.94152 0.99577 0.95394 0.91501 1.21810 1.01799 0.99976 0.96142 0.92510 0.92404 0.90788 0.95438 0.91205 0.96535 0.91970 0.99077 0.98799 0.92712 0.92979 0.95657 0.92203 0.90422 0.92157 0.91131 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.90 71.98 0.64 -1.89 16 2 C -0.08 -1.96 2.38 -10.74 -0.03 -1.98 16 3 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.06 1.79 4.74 86.33 0.41 2.20 16 5 N -0.55 -21.36 4.65 -896.36 -4.17 -25.53 16 6 C 0.08 3.57 4.90 86.30 0.42 4.00 16 7 C 0.04 2.07 4.91 29.85 0.15 2.22 16 8 C -0.55 -32.20 9.11 25.60 0.23 -31.97 16 9 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 10 C 0.00 0.09 5.46 84.65 0.46 0.55 16 11 N -0.93 -58.18 13.29 21.45 0.28 -57.89 16 12 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 15 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 16 C 0.05 1.97 5.29 86.32 0.46 2.43 16 17 C -0.11 -2.96 5.38 30.65 0.16 -2.80 16 18 C -0.08 -1.94 2.29 -10.71 -0.02 -1.96 16 19 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 20 C -0.14 -2.48 8.90 71.98 0.64 -1.84 16 21 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.07 1.11 6.51 -2.39 -0.02 1.09 16 24 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.07 2.09 8.01 -2.39 -0.02 2.07 16 26 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 27 H 0.06 2.74 7.98 -2.38 -0.02 2.72 16 28 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H -0.01 -0.37 6.44 -2.39 -0.02 -0.39 16 30 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 31 H 0.05 2.20 6.22 -2.39 -0.01 2.19 16 32 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.03 6.52 -2.39 -0.02 1.02 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -65.25 286.48 2.66 -62.59 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 1.00 Total: 4.81 kcal Atomic # 6 Polarization: -34.58 SS G_CDS: 3.53 Total: -31.05 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -3.89 Total: -83.43 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -65.25 2.66 -62.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135085478.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.638 kcal (2) G-P(sol) polarization free energy of solvation -65.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds