Wall clock time and date at job start Sun Mar 29 2020 21:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47300 * 2 1 4 4 H 1.09001 * 109.47066 * 54.49616 * 3 2 1 5 5 C 1.50700 * 109.47382 * 174.49647 * 3 2 1 6 6 H 1.08000 * 119.99926 * 119.72101 * 5 3 2 7 7 C 1.37875 * 119.99996 * 300.00492 * 5 3 2 8 8 N 1.31510 * 120.00215 * 359.71383 * 7 5 3 9 9 Si 1.86805 * 120.00042 * 179.72355 * 7 5 3 10 10 H 1.48501 * 109.46797 * 89.99371 * 9 7 5 11 11 H 1.48501 * 109.46923 * 209.99661 * 9 7 5 12 12 H 1.48501 * 109.46769 * 329.99459 * 9 7 5 13 13 N 1.46898 * 109.47072 * 294.49744 * 3 2 1 14 14 C 1.46899 * 111.00286 * 154.42437 * 13 3 2 15 15 C 1.52999 * 109.47277 * 174.78812 * 14 13 3 16 16 C 1.53003 * 109.46848 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46848 * 179.97438 * 16 15 14 18 18 C 1.53006 * 117.49816 * 243.75273 * 17 16 15 19 19 C 1.52999 * 117.49706 * 175.09076 * 17 16 15 20 20 H 1.08998 * 109.46993 * 186.01585 * 1 2 3 21 21 H 1.09002 * 109.47359 * 306.01684 * 1 2 3 22 22 H 1.09002 * 109.46777 * 66.01168 * 1 2 3 23 23 H 1.08997 * 109.47193 * 239.99867 * 2 1 3 24 24 H 1.09009 * 109.46851 * 119.99803 * 2 1 3 25 25 H 0.97001 * 120.00552 * 179.97438 * 8 7 5 26 26 H 1.00904 * 110.99684 * 30.46898 * 13 3 2 27 27 H 1.09004 * 109.46866 * 294.78824 * 14 13 3 28 28 H 1.08998 * 109.47093 * 54.78622 * 14 13 3 29 29 H 1.08995 * 109.46786 * 300.00244 * 15 14 13 30 30 H 1.08996 * 109.47228 * 60.00431 * 15 14 13 31 31 H 1.08998 * 109.47594 * 300.00325 * 16 15 14 32 32 H 1.09005 * 109.46631 * 60.00561 * 16 15 14 33 33 H 1.08995 * 115.54963 * 29.41595 * 17 16 15 34 34 H 1.08999 * 117.49653 * 359.97438 * 18 17 16 35 35 H 1.09002 * 117.50222 * 145.02442 * 18 17 16 36 36 H 1.09001 * 117.50061 * 214.97641 * 19 17 16 37 37 H 1.08997 * 117.50055 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5985 1.9840 0.8366 5 6 3.5409 1.4447 0.1363 6 1 4.1527 1.8830 -0.6383 7 6 4.1330 0.8820 1.2469 8 7 3.3880 0.3483 2.1901 9 14 5.9938 0.8778 1.4122 10 1 6.4313 2.1126 2.1116 11 1 6.4186 -0.3110 2.1941 12 1 6.6104 0.8286 0.0622 13 7 1.6618 2.0956 -1.2603 14 6 1.5683 3.5518 -1.0913 15 6 1.3014 4.2066 -2.4481 16 6 1.2034 5.7233 -2.2719 17 6 0.9370 6.3782 -3.6287 18 6 2.0089 7.3200 -4.1812 19 6 0.6911 7.8881 -3.6482 20 1 -0.3633 -1.0220 0.1077 21 1 -0.3634 0.6043 0.8312 22 1 -0.3633 0.4178 -0.9389 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5139 0.8901 25 1 3.8046 -0.0480 2.9714 26 1 0.7979 1.7169 -1.6187 27 1 0.7524 3.7866 -0.4077 28 1 2.5050 3.9311 -0.6829 29 1 2.1172 3.9718 -3.1316 30 1 0.3646 3.8275 -2.8565 31 1 0.3873 5.9578 -1.5884 32 1 2.1400 6.1028 -1.8633 33 1 0.3851 5.7690 -4.3445 34 1 2.9035 7.4734 -3.5777 35 1 2.1617 7.3309 -5.2604 36 1 -0.0225 8.2725 -4.3771 37 1 0.7194 8.4150 -2.6945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156994689.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:11 Heat of formation + Delta-G solvation = -2.259184 kcal Electronic energy + Delta-G solvation = -13951.665082 eV Core-core repulsion = 11728.680102 eV Total energy + Delta-G solvation = -2222.984980 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -37.78527 -36.36286 -33.54040 -31.74239 -30.13359 -26.79397 -24.77179 -22.62487 -22.39760 -20.76764 -20.33976 -19.39874 -16.28398 -15.63658 -15.01665 -14.68118 -14.52527 -13.82304 -13.58106 -12.85068 -12.51840 -12.38704 -11.71368 -11.63765 -11.51913 -11.31219 -11.11374 -10.89966 -10.71784 -10.59269 -10.33298 -10.22195 -9.91439 -9.79561 -9.62177 -9.41895 -9.01151 -8.30749 -7.14309 -5.92568 -3.96349 3.34765 3.41129 3.46271 3.79438 4.48174 4.64742 4.92323 4.93961 5.32871 5.35050 5.41676 5.52045 5.58073 5.76920 5.86451 6.04170 6.09118 6.11801 6.18778 6.20474 6.21494 6.26432 6.44833 6.46019 6.74643 6.81555 6.88274 7.12860 7.24773 7.55900 7.82543 7.96886 8.38133 8.45428 8.83639 9.11978 9.68466 11.12951 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.029206 B = 0.006531 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.483188 B = 4286.037497 C = 5045.178522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.217 3.783 4 H 0.000 1.000 5 C -0.491 4.491 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.688 5.688 14 C 0.067 3.933 15 C -0.111 4.111 16 C -0.089 4.089 17 C -0.146 4.146 18 C -0.182 4.182 19 C -0.187 4.187 20 H 0.037 0.963 21 H 0.041 0.959 22 H 0.035 0.965 23 H 0.041 0.959 24 H 0.099 0.901 25 H 0.259 0.741 26 H 0.315 0.685 27 H 0.011 0.989 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.428 8.963 -8.242 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.110 3.890 4 H 0.018 0.982 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.319 5.319 14 C -0.063 4.063 15 C -0.149 4.149 16 C -0.127 4.127 17 C -0.164 4.164 18 C -0.219 4.219 19 C -0.224 4.224 20 H 0.056 0.944 21 H 0.061 0.939 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.117 0.883 25 H 0.069 0.931 26 H 0.132 0.868 27 H 0.029 0.971 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.749 8.881 -8.293 13.046 hybrid contribution 0.140 0.056 0.681 0.697 sum -4.609 8.937 -7.612 12.612 Atomic orbital electron populations 1.21878 0.99635 0.99666 0.99529 1.21763 0.91216 1.00431 1.03003 1.19155 0.95435 0.89952 0.84462 0.98193 1.21229 0.91324 1.36332 1.04104 0.92113 1.24963 0.98072 0.95702 0.95881 1.69876 1.34648 1.39761 1.09495 0.86557 0.85876 0.77305 0.78013 1.20920 1.21376 1.19911 1.60672 1.36024 1.02324 1.32906 1.21815 0.99972 0.90056 0.94418 1.21546 1.01486 0.93173 0.98688 1.21172 1.01528 0.95789 0.94179 1.22388 1.02788 0.91747 0.99522 1.23035 0.93260 1.04855 1.00791 1.22967 0.99884 0.96780 1.02789 0.94406 0.93943 0.94601 0.94059 0.88329 0.93145 0.86836 0.97107 0.91012 0.91361 0.92921 0.91973 0.91794 0.88001 0.88783 0.89191 0.89233 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.64 37.16 0.36 -2.60 16 2 C -0.13 -3.02 5.36 -26.73 -0.14 -3.16 16 3 C 0.22 5.54 2.02 -68.86 -0.14 5.40 16 4 H 0.00 0.01 7.85 -51.93 -0.41 -0.40 16 5 C -0.49 -13.82 8.57 -34.44 -0.30 -14.11 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.90 11.30 55.43 0.63 -25.27 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.69 -15.01 6.27 -107.95 -0.68 -15.69 16 14 C 0.07 1.30 5.45 -3.82 -0.02 1.28 16 15 C -0.11 -1.70 5.48 -26.73 -0.15 -1.85 16 16 C -0.09 -1.17 5.50 -26.73 -0.15 -1.31 16 17 C -0.15 -1.69 5.73 -90.62 -0.52 -2.20 16 18 C -0.18 -1.93 10.18 -26.69 -0.27 -2.20 16 19 C -0.19 -1.89 10.25 -26.69 -0.27 -2.16 16 20 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.03 0.63 6.66 -51.93 -0.35 0.29 16 23 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.10 2.65 5.95 -51.92 -0.31 2.34 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.31 6.26 6.64 -39.29 -0.26 6.00 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 1.52 7.94 -51.93 -0.41 1.11 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.86 7.87 -51.93 -0.41 0.45 16 33 H 0.10 1.14 8.07 -51.93 -0.42 0.72 16 34 H 0.09 1.00 8.03 -51.93 -0.42 0.59 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 298.46 15.07 4.50 4.50 Total: -1.00 -28.47 298.46 -9.02 -37.49 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.75 Total: 3.74 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -1.69 Total: -21.52 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: -0.05 Total: -40.96 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.47 -9.02 -37.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156994689.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.230 kcal (2) G-P(sol) polarization free energy of solvation -28.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds