Wall clock time and date at job start Sun Mar 29 2020 21:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47300 * 2 1 4 4 H 1.09001 * 109.47066 * 54.49616 * 3 2 1 5 5 C 1.50700 * 109.47382 * 174.49647 * 3 2 1 6 6 H 1.08000 * 119.99926 * 119.72101 * 5 3 2 7 7 C 1.37875 * 119.99996 * 300.00492 * 5 3 2 8 8 N 1.31510 * 120.00215 * 359.71383 * 7 5 3 9 9 Si 1.86805 * 120.00042 * 179.72355 * 7 5 3 10 10 H 1.48501 * 109.46797 * 89.99371 * 9 7 5 11 11 H 1.48501 * 109.46923 * 209.99661 * 9 7 5 12 12 H 1.48501 * 109.46769 * 329.99459 * 9 7 5 13 13 N 1.46898 * 109.47072 * 294.49744 * 3 2 1 14 14 C 1.46899 * 111.00286 * 154.42437 * 13 3 2 15 15 C 1.52999 * 109.47277 * 174.78812 * 14 13 3 16 16 C 1.53003 * 109.46848 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46848 * 179.97438 * 16 15 14 18 18 C 1.53006 * 117.49816 * 243.75273 * 17 16 15 19 19 C 1.52999 * 117.49706 * 175.09076 * 17 16 15 20 20 H 1.08998 * 109.46993 * 186.01585 * 1 2 3 21 21 H 1.09002 * 109.47359 * 306.01684 * 1 2 3 22 22 H 1.09002 * 109.46777 * 66.01168 * 1 2 3 23 23 H 1.08997 * 109.47193 * 239.99867 * 2 1 3 24 24 H 1.09009 * 109.46851 * 119.99803 * 2 1 3 25 25 H 0.97001 * 120.00552 * 179.97438 * 8 7 5 26 26 H 1.00904 * 110.99684 * 30.46898 * 13 3 2 27 27 H 1.09004 * 109.46866 * 294.78824 * 14 13 3 28 28 H 1.08998 * 109.47093 * 54.78622 * 14 13 3 29 29 H 1.08995 * 109.46786 * 300.00244 * 15 14 13 30 30 H 1.08996 * 109.47228 * 60.00431 * 15 14 13 31 31 H 1.08998 * 109.47594 * 300.00325 * 16 15 14 32 32 H 1.09005 * 109.46631 * 60.00561 * 16 15 14 33 33 H 1.08995 * 115.54963 * 29.41595 * 17 16 15 34 34 H 1.08999 * 117.49653 * 359.97438 * 18 17 16 35 35 H 1.09002 * 117.50222 * 145.02442 * 18 17 16 36 36 H 1.09001 * 117.50061 * 214.97641 * 19 17 16 37 37 H 1.08997 * 117.50055 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5985 1.9840 0.8366 5 6 3.5409 1.4447 0.1363 6 1 4.1527 1.8830 -0.6383 7 6 4.1330 0.8820 1.2469 8 7 3.3880 0.3483 2.1901 9 14 5.9938 0.8778 1.4122 10 1 6.4313 2.1126 2.1116 11 1 6.4186 -0.3110 2.1941 12 1 6.6104 0.8286 0.0622 13 7 1.6618 2.0956 -1.2603 14 6 1.5683 3.5518 -1.0913 15 6 1.3014 4.2066 -2.4481 16 6 1.2034 5.7233 -2.2719 17 6 0.9370 6.3782 -3.6287 18 6 2.0089 7.3200 -4.1812 19 6 0.6911 7.8881 -3.6482 20 1 -0.3633 -1.0220 0.1077 21 1 -0.3634 0.6043 0.8312 22 1 -0.3633 0.4178 -0.9389 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5139 0.8901 25 1 3.8046 -0.0480 2.9714 26 1 0.7979 1.7169 -1.6187 27 1 0.7524 3.7866 -0.4077 28 1 2.5050 3.9311 -0.6829 29 1 2.1172 3.9718 -3.1316 30 1 0.3646 3.8275 -2.8565 31 1 0.3873 5.9578 -1.5884 32 1 2.1400 6.1028 -1.8633 33 1 0.3851 5.7690 -4.3445 34 1 2.9035 7.4734 -3.5777 35 1 2.1617 7.3309 -5.2604 36 1 -0.0225 8.2725 -4.3771 37 1 0.7194 8.4150 -2.6945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156994689.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:11 Heat of formation + Delta-G solvation = -18.233316 kcal Electronic energy + Delta-G solvation = -13952.357772 eV Core-core repulsion = 11728.680102 eV Total energy + Delta-G solvation = -2223.677671 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.85593 -38.02399 -35.16975 -33.67800 -31.66597 -28.67753 -26.35500 -24.42253 -23.20655 -22.24176 -21.46801 -21.13213 -18.39225 -16.81927 -16.75162 -16.22966 -15.91922 -15.37905 -14.95142 -14.63469 -14.02776 -13.97785 -13.28052 -13.19306 -12.87448 -12.67932 -12.58471 -12.52136 -12.33009 -12.03033 -11.97863 -11.71074 -11.53337 -11.42699 -11.02934 -10.91075 -10.68175 -10.43596 -8.99338 -8.07103 -6.19344 1.40611 1.41580 1.52775 2.43808 2.95242 3.17629 3.53427 3.93639 4.05992 4.14185 4.24976 4.31449 4.49596 4.55694 4.57179 4.70831 4.77696 4.81770 4.82669 4.97214 4.99404 5.09544 5.12214 5.23155 5.29421 5.30326 5.37582 5.44556 5.49914 5.61255 5.75156 5.89749 6.36348 6.52351 6.94363 7.03231 7.49816 8.96295 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.029206 B = 0.006531 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.483188 B = 4286.037497 C = 5045.178522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.222 3.778 4 H -0.034 1.034 5 C -0.513 4.513 6 H 0.047 0.953 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.956 3.044 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.271 1.271 13 N -0.690 5.690 14 C 0.069 3.931 15 C -0.097 4.097 16 C -0.083 4.083 17 C -0.158 4.158 18 C -0.186 4.186 19 C -0.177 4.177 20 H 0.058 0.942 21 H 0.035 0.965 22 H 0.059 0.941 23 H 0.037 0.963 24 H 0.067 0.933 25 H 0.261 0.739 26 H 0.328 0.672 27 H 0.012 0.988 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.887 9.558 -9.416 14.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.114 3.886 4 H -0.016 1.016 5 C -0.552 4.552 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.782 3.218 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.196 1.196 13 N -0.321 5.321 14 C -0.061 4.061 15 C -0.135 4.135 16 C -0.121 4.121 17 C -0.177 4.177 18 C -0.223 4.223 19 C -0.214 4.214 20 H 0.077 0.923 21 H 0.054 0.946 22 H 0.078 0.922 23 H 0.056 0.944 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.146 0.854 27 H 0.030 0.970 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.126 0.874 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.220 9.484 -9.479 14.390 hybrid contribution 0.269 -0.110 1.049 1.089 sum -4.952 9.374 -8.430 13.544 Atomic orbital electron populations 1.21747 0.96164 1.01176 1.00535 1.21593 0.94345 0.98862 1.01203 1.18955 0.94084 0.90783 0.84806 1.01644 1.21477 0.92853 1.36702 1.04149 0.93421 1.25697 1.02433 0.95264 0.95523 1.70002 1.36290 1.40005 1.09781 0.85584 0.80630 0.77549 0.78020 1.20338 1.20633 1.19619 1.60575 1.36991 1.03671 1.30912 1.21833 0.98641 0.88734 0.96859 1.21409 1.01810 0.94452 0.95803 1.21086 1.01313 0.94170 0.95578 1.22322 1.04012 0.92710 0.98606 1.23115 0.93257 1.04436 1.01474 1.23050 0.99684 0.95388 1.03237 0.92294 0.94604 0.92227 0.94407 0.91456 0.93033 0.85355 0.96973 0.93714 0.92184 0.91372 0.91610 0.92633 0.87383 0.89296 0.88019 0.87632 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 9.64 71.98 0.69 -4.60 16 2 C -0.12 -5.86 5.36 30.59 0.16 -5.70 16 3 C 0.22 11.53 2.02 44.17 0.09 11.62 16 4 H -0.03 -1.96 7.85 -2.39 -0.02 -1.98 16 5 C -0.51 -29.49 8.57 25.60 0.22 -29.27 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 7 C 0.01 0.50 5.29 84.65 0.45 0.95 16 8 N -0.92 -53.97 11.30 21.45 0.24 -53.73 16 9 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 N -0.69 -30.04 6.27 -495.45 -3.11 -33.14 16 14 C 0.07 2.67 5.45 86.30 0.47 3.14 16 15 C -0.10 -2.87 5.48 30.59 0.17 -2.70 16 16 C -0.08 -2.10 5.50 30.59 0.17 -1.93 16 17 C -0.16 -3.33 5.73 -10.79 -0.06 -3.40 16 18 C -0.19 -3.59 10.18 30.62 0.31 -3.28 16 19 C -0.18 -3.14 10.25 30.62 0.31 -2.83 16 20 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 21 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.06 1.97 6.66 -2.39 -0.02 1.95 16 23 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.07 3.69 5.95 -2.38 -0.01 3.67 16 25 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 26 H 0.33 12.64 6.64 -89.69 -0.60 12.05 16 27 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 28 H 0.04 1.95 7.94 -2.39 -0.02 1.93 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.48 7.87 -2.38 -0.02 1.46 16 33 H 0.11 2.15 8.07 -2.39 -0.02 2.14 16 34 H 0.09 1.80 8.03 -2.39 -0.02 1.78 16 35 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -61.24 298.46 2.56 -58.68 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.41 Total: 19.14 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 2.98 Total: -37.99 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -2.86 Total: -86.87 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -61.24 2.56 -58.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156994689.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.452 kcal (2) G-P(sol) polarization free energy of solvation -61.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds