Wall clock time and date at job start Sun Mar 29 2020 21:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46589 * 2 1 4 4 H 1.09006 * 109.46709 * 177.50595 * 3 2 1 5 5 C 1.50695 * 109.47099 * 57.50777 * 3 2 1 6 6 H 1.07995 * 120.00224 * 244.17428 * 5 3 2 7 7 C 1.37881 * 120.00307 * 64.17997 * 5 3 2 8 8 N 1.31524 * 119.99749 * 9.66512 * 7 5 3 9 9 Si 1.86791 * 120.00318 * 189.66213 * 7 5 3 10 10 H 1.48505 * 109.47283 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47520 * 299.99860 * 9 7 5 12 12 H 1.48504 * 109.47200 * 60.00227 * 9 7 5 13 13 N 1.46895 * 109.47380 * 297.50235 * 3 2 1 14 14 C 1.46899 * 111.00507 * 273.82472 * 13 3 2 15 15 C 1.52996 * 109.47103 * 185.16967 * 14 13 3 16 16 C 1.52998 * 109.46983 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.47287 * 179.97438 * 16 15 14 18 18 C 1.52999 * 117.50159 * 243.74760 * 17 16 15 19 19 C 1.53000 * 117.50097 * 175.08931 * 17 16 15 20 20 H 1.08992 * 109.47194 * 305.23378 * 1 2 3 21 21 H 1.09002 * 109.47215 * 65.23703 * 1 2 3 22 22 H 1.09004 * 109.46567 * 185.23555 * 1 2 3 23 23 H 1.09004 * 109.47122 * 240.00227 * 2 1 3 24 24 H 1.08997 * 109.46906 * 120.00005 * 2 1 3 25 25 H 0.96994 * 119.99843 * 356.93998 * 8 7 5 26 26 H 1.00903 * 110.99873 * 37.78297 * 13 3 2 27 27 H 1.09002 * 109.46528 * 305.16478 * 14 13 3 28 28 H 1.08998 * 109.46955 * 65.16838 * 14 13 3 29 29 H 1.08993 * 109.47204 * 299.99752 * 15 14 13 30 30 H 1.08998 * 109.47321 * 60.00095 * 15 14 13 31 31 H 1.09001 * 109.47352 * 299.99794 * 16 15 14 32 32 H 1.09005 * 109.47089 * 60.00205 * 16 15 14 33 33 H 1.08998 * 115.54852 * 29.42086 * 17 16 15 34 34 H 1.08997 * 117.49782 * 0.02562 * 18 17 16 35 35 H 1.09003 * 117.49750 * 145.01604 * 18 17 16 36 36 H 1.09004 * 117.50265 * 214.98397 * 19 17 16 37 37 H 1.09003 * 117.49610 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1291 1.4429 0.0447 5 6 1.4877 2.1705 1.1984 6 1 0.8172 3.0058 1.0610 7 6 1.8387 1.7702 2.4703 8 7 2.7956 0.8840 2.6402 9 14 0.9552 2.4864 3.9520 10 1 1.5145 1.8964 5.1948 11 1 1.1418 3.9594 3.9754 12 1 -0.4936 2.1723 3.8641 13 7 1.6001 2.1174 -1.2284 14 6 2.5448 1.8782 -2.3277 15 6 2.1241 2.6980 -3.5490 16 6 3.1084 2.4494 -4.6937 17 6 2.6874 3.2687 -5.9154 18 6 2.2763 2.5010 -7.1734 19 6 3.6126 3.2466 -7.1338 20 1 -0.3633 0.5928 0.8393 21 1 -0.3634 0.4305 -0.9332 22 1 -0.3632 -1.0234 0.0938 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.2240 0.4791 1.8699 26 1 0.6673 1.8305 -1.4844 27 1 3.5463 2.1764 -2.0173 28 1 2.5439 0.8187 -2.5834 29 1 1.1227 2.4000 -3.8593 30 1 2.1250 3.7576 -3.2933 31 1 4.1097 2.7478 -4.3832 32 1 3.1079 1.3898 -4.9496 33 1 2.1620 4.1989 -5.6992 34 1 2.3053 1.4123 -7.1305 35 1 1.4806 2.9264 -7.7850 36 1 3.6956 4.1622 -7.7195 37 1 4.5209 2.6480 -7.0652 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156994821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:12 Heat of formation + Delta-G solvation = -4.109265 kcal Electronic energy + Delta-G solvation = -14003.003212 eV Core-core repulsion = 11779.938007 eV Total energy + Delta-G solvation = -2223.065206 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.90883 -36.77842 -33.82580 -31.61839 -30.01162 -26.43668 -24.38092 -23.46103 -22.49781 -21.04318 -20.43477 -19.48764 -16.67689 -15.70289 -15.37715 -14.45945 -14.14809 -13.91435 -13.60664 -13.25545 -12.51724 -12.37921 -12.25456 -11.65635 -11.64427 -11.31032 -11.08453 -10.78922 -10.73369 -10.72249 -10.30699 -10.10485 -10.00680 -9.93605 -9.87036 -9.81640 -8.64092 -8.15518 -7.24244 -6.26640 -3.93797 3.48632 3.49828 3.68662 3.71123 4.52248 4.60262 4.83836 4.85267 5.21864 5.27723 5.42207 5.43447 5.49969 5.59954 5.74939 5.92887 5.98700 5.99627 6.04853 6.11272 6.13092 6.19783 6.27132 6.34289 6.56323 6.61447 6.70831 7.02956 7.09006 7.28042 7.32732 8.00201 8.34223 8.52179 8.71475 8.98387 9.74292 11.09839 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054668 B = 0.005369 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.059238 B = 5214.277960 C = 5357.694545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.151 4.151 3 C 0.203 3.797 4 H 0.023 0.977 5 C -0.571 4.571 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 1.066 2.934 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.679 5.679 14 C 0.058 3.942 15 C -0.111 4.111 16 C -0.088 4.088 17 C -0.147 4.147 18 C -0.184 4.184 19 C -0.185 4.185 20 H 0.072 0.928 21 H 0.033 0.967 22 H 0.028 0.972 23 H 0.019 0.981 24 H 0.066 0.934 25 H 0.268 0.732 26 H 0.327 0.673 27 H 0.062 0.938 28 H 0.013 0.987 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.143 1.592 -14.523 14.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.191 4.191 3 C 0.095 3.905 4 H 0.041 0.959 5 C -0.610 4.610 6 H 0.073 0.927 7 C -0.187 4.187 8 N -0.553 5.553 9 Si 0.895 3.105 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.309 5.309 14 C -0.072 4.072 15 C -0.149 4.149 16 C -0.126 4.126 17 C -0.165 4.165 18 C -0.221 4.221 19 C -0.222 4.222 20 H 0.091 0.909 21 H 0.052 0.948 22 H 0.047 0.953 23 H 0.038 0.962 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.145 0.855 27 H 0.080 0.920 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.893 2.191 -12.674 12.893 hybrid contribution -0.127 -1.017 -2.006 2.252 sum -1.021 1.174 -14.679 14.762 Atomic orbital electron populations 1.21596 0.96816 0.99152 1.01352 1.22215 0.96092 1.01384 0.99370 1.19332 0.95094 0.88233 0.87886 0.95918 1.21832 1.31214 1.17020 0.90906 0.92684 1.25726 0.95841 0.96569 1.00547 1.70816 1.21568 1.28557 1.34393 0.83574 0.75535 0.75684 0.75681 1.21024 1.21546 1.21548 1.60725 1.04134 1.62659 1.03417 1.21926 0.97594 0.96024 0.91657 1.21523 0.98303 1.01295 0.93737 1.21167 0.99467 0.98701 0.93278 1.22391 1.03294 1.01227 0.89602 1.23029 0.98275 0.99137 1.01621 1.22966 0.94407 1.02568 1.02308 0.90914 0.94803 0.95305 0.96203 0.91498 0.92102 0.85534 0.91971 0.96865 0.92557 0.91299 0.91628 0.92230 0.87806 0.88953 0.89146 0.89093 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.38 37.16 0.35 -2.42 16 2 C -0.15 -3.50 5.47 -26.73 -0.15 -3.65 16 3 C 0.20 5.10 1.96 -68.87 -0.13 4.96 16 4 H 0.02 0.63 7.10 -51.93 -0.37 0.26 16 5 C -0.57 -15.90 7.31 -34.44 -0.25 -16.15 16 6 H 0.05 1.57 7.83 -52.49 -0.41 1.16 16 7 C 0.02 0.47 5.21 -17.81 -0.09 0.37 16 8 N -0.92 -27.37 13.07 55.43 0.72 -26.64 16 9 Si 1.07 25.31 29.91 -169.99 -5.09 20.22 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.68 -14.74 6.21 -107.96 -0.67 -15.41 16 14 C 0.06 1.06 5.51 -3.83 -0.02 1.04 16 15 C -0.11 -1.63 5.48 -26.73 -0.15 -1.78 16 16 C -0.09 -1.10 5.50 -26.73 -0.15 -1.24 16 17 C -0.15 -1.62 5.73 -90.62 -0.52 -2.14 16 18 C -0.18 -1.81 10.18 -26.70 -0.27 -2.08 16 19 C -0.19 -1.79 10.25 -26.70 -0.27 -2.06 16 20 H 0.07 1.68 6.95 -51.93 -0.36 1.32 16 21 H 0.03 0.64 6.55 -51.93 -0.34 0.30 16 22 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.02 0.42 7.58 -51.93 -0.39 0.03 16 24 H 0.07 1.71 6.32 -51.93 -0.33 1.38 16 25 H 0.27 7.97 5.93 -40.82 -0.24 7.73 16 26 H 0.33 6.73 6.54 -39.29 -0.26 6.47 16 27 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 28 H 0.01 0.24 7.59 -51.93 -0.39 -0.15 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.73 7.87 -51.93 -0.41 0.32 16 33 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 34 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 293.80 15.07 4.43 4.43 Total: -1.00 -29.06 293.80 -8.77 -37.83 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.51 Total: 4.73 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: -1.66 Total: -25.15 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.05 Total: -42.06 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.09 Total: 20.22 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.06 -8.77 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156994821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.720 kcal (2) G-P(sol) polarization free energy of solvation -29.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds