Wall clock time and date at job start Sun Mar 29 2020 21:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46589 * 2 1 4 4 H 1.09006 * 109.46709 * 177.50595 * 3 2 1 5 5 C 1.50695 * 109.47099 * 57.50777 * 3 2 1 6 6 H 1.07995 * 120.00224 * 244.17428 * 5 3 2 7 7 C 1.37881 * 120.00307 * 64.17997 * 5 3 2 8 8 N 1.31524 * 119.99749 * 9.66512 * 7 5 3 9 9 Si 1.86791 * 120.00318 * 189.66213 * 7 5 3 10 10 H 1.48505 * 109.47283 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47520 * 299.99860 * 9 7 5 12 12 H 1.48504 * 109.47200 * 60.00227 * 9 7 5 13 13 N 1.46895 * 109.47380 * 297.50235 * 3 2 1 14 14 C 1.46899 * 111.00507 * 273.82472 * 13 3 2 15 15 C 1.52996 * 109.47103 * 185.16967 * 14 13 3 16 16 C 1.52998 * 109.46983 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.47287 * 179.97438 * 16 15 14 18 18 C 1.52999 * 117.50159 * 243.74760 * 17 16 15 19 19 C 1.53000 * 117.50097 * 175.08931 * 17 16 15 20 20 H 1.08992 * 109.47194 * 305.23378 * 1 2 3 21 21 H 1.09002 * 109.47215 * 65.23703 * 1 2 3 22 22 H 1.09004 * 109.46567 * 185.23555 * 1 2 3 23 23 H 1.09004 * 109.47122 * 240.00227 * 2 1 3 24 24 H 1.08997 * 109.46906 * 120.00005 * 2 1 3 25 25 H 0.96994 * 119.99843 * 356.93998 * 8 7 5 26 26 H 1.00903 * 110.99873 * 37.78297 * 13 3 2 27 27 H 1.09002 * 109.46528 * 305.16478 * 14 13 3 28 28 H 1.08998 * 109.46955 * 65.16838 * 14 13 3 29 29 H 1.08993 * 109.47204 * 299.99752 * 15 14 13 30 30 H 1.08998 * 109.47321 * 60.00095 * 15 14 13 31 31 H 1.09001 * 109.47352 * 299.99794 * 16 15 14 32 32 H 1.09005 * 109.47089 * 60.00205 * 16 15 14 33 33 H 1.08998 * 115.54852 * 29.42086 * 17 16 15 34 34 H 1.08997 * 117.49782 * 0.02562 * 18 17 16 35 35 H 1.09003 * 117.49750 * 145.01604 * 18 17 16 36 36 H 1.09004 * 117.50265 * 214.98397 * 19 17 16 37 37 H 1.09003 * 117.49610 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1291 1.4429 0.0447 5 6 1.4877 2.1705 1.1984 6 1 0.8172 3.0058 1.0610 7 6 1.8387 1.7702 2.4703 8 7 2.7956 0.8840 2.6402 9 14 0.9552 2.4864 3.9520 10 1 1.5145 1.8964 5.1948 11 1 1.1418 3.9594 3.9754 12 1 -0.4936 2.1723 3.8641 13 7 1.6001 2.1174 -1.2284 14 6 2.5448 1.8782 -2.3277 15 6 2.1241 2.6980 -3.5490 16 6 3.1084 2.4494 -4.6937 17 6 2.6874 3.2687 -5.9154 18 6 2.2763 2.5010 -7.1734 19 6 3.6126 3.2466 -7.1338 20 1 -0.3633 0.5928 0.8393 21 1 -0.3634 0.4305 -0.9332 22 1 -0.3632 -1.0234 0.0938 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.2240 0.4791 1.8699 26 1 0.6673 1.8305 -1.4844 27 1 3.5463 2.1764 -2.0173 28 1 2.5439 0.8187 -2.5834 29 1 1.1227 2.4000 -3.8593 30 1 2.1250 3.7576 -3.2933 31 1 4.1097 2.7478 -4.3832 32 1 3.1079 1.3898 -4.9496 33 1 2.1620 4.1989 -5.6992 34 1 2.3053 1.4123 -7.1305 35 1 1.4806 2.9264 -7.7850 36 1 3.6956 4.1622 -7.7195 37 1 4.5209 2.6480 -7.0652 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156994821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:12 Heat of formation + Delta-G solvation = -20.578519 kcal Electronic energy + Delta-G solvation = -14003.717373 eV Core-core repulsion = 11779.938007 eV Total energy + Delta-G solvation = -2223.779366 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.06229 -38.31454 -35.42605 -33.46470 -31.58669 -28.18178 -26.08350 -25.31207 -23.24595 -22.41039 -21.56634 -21.18610 -18.73948 -16.92315 -16.62114 -15.80977 -15.76705 -15.48206 -15.20062 -14.97448 -14.25118 -13.95278 -13.59789 -13.15052 -12.89613 -12.60810 -12.54634 -12.38938 -12.16859 -12.05500 -11.94166 -11.83373 -11.74135 -11.60102 -11.07005 -10.75156 -10.66204 -10.30380 -9.03265 -8.51511 -6.19977 1.56215 1.63404 1.82552 2.61127 2.91941 3.25416 3.43129 3.88062 4.00366 4.05561 4.15492 4.27811 4.32881 4.35534 4.40644 4.54653 4.63295 4.79000 4.82128 4.86103 4.89311 4.95251 5.05538 5.12812 5.19971 5.25723 5.26523 5.32715 5.39228 5.47444 5.54127 6.00185 6.21866 6.55889 6.78492 6.81491 7.56162 8.84678 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054668 B = 0.005369 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.059238 B = 5214.277960 C = 5357.694545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 C 0.205 3.795 4 H -0.012 1.012 5 C -0.578 4.578 6 H 0.045 0.955 7 C -0.030 4.030 8 N -0.940 5.940 9 Si 1.110 2.890 10 H -0.288 1.288 11 H -0.276 1.276 12 H -0.270 1.270 13 N -0.686 5.686 14 C 0.060 3.940 15 C -0.098 4.098 16 C -0.082 4.082 17 C -0.162 4.162 18 C -0.180 4.180 19 C -0.180 4.180 20 H 0.049 0.951 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.256 0.744 26 H 0.335 0.665 27 H 0.046 0.954 28 H 0.018 0.982 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.264 1.835 -15.856 16.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.183 4.183 3 C 0.096 3.904 4 H 0.006 0.994 5 C -0.616 4.616 6 H 0.063 0.937 7 C -0.227 4.227 8 N -0.578 5.578 9 Si 0.933 3.067 10 H -0.213 1.213 11 H -0.202 1.202 12 H -0.195 1.195 13 N -0.317 5.317 14 C -0.070 4.070 15 C -0.136 4.136 16 C -0.119 4.119 17 C -0.180 4.180 18 C -0.217 4.217 19 C -0.217 4.217 20 H 0.068 0.932 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.154 0.846 27 H 0.064 0.936 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.022 2.439 -14.043 14.396 hybrid contribution 0.259 -1.087 -1.661 2.002 sum -1.763 1.352 -15.704 15.861 Atomic orbital electron populations 1.21507 0.94760 1.00413 1.01498 1.22070 0.97826 0.99683 0.98730 1.19135 0.92875 0.89554 0.88842 0.99433 1.22087 1.30621 1.16747 0.92182 0.93658 1.27039 0.95727 0.96335 1.03630 1.70930 1.22991 1.30017 1.33880 0.83012 0.75508 0.75678 0.72518 1.21330 1.20203 1.19482 1.60617 1.05184 1.62444 1.03431 1.21974 0.96147 0.97012 0.91851 1.21402 0.99349 1.00004 0.92842 1.21072 0.98534 0.99277 0.93065 1.22314 1.04811 1.01383 0.89515 1.23114 0.98721 0.99263 1.00554 1.23053 0.94429 1.03091 1.01084 0.93238 0.92586 0.93007 0.94509 0.94384 0.93362 0.84630 0.93582 0.96341 0.91704 0.92052 0.92030 0.91846 0.87857 0.88781 0.88046 0.87907 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.38 71.98 0.68 -4.36 16 2 C -0.14 -6.63 5.47 30.60 0.17 -6.47 16 3 C 0.21 10.45 1.96 44.17 0.09 10.53 16 4 H -0.01 -0.70 7.10 -2.38 -0.02 -0.72 16 5 C -0.58 -32.48 7.31 25.60 0.19 -32.30 16 6 H 0.05 2.59 7.83 -2.91 -0.02 2.57 16 7 C -0.03 -1.69 5.21 84.65 0.44 -1.25 16 8 N -0.94 -57.29 13.07 21.45 0.28 -57.01 16 9 Si 1.11 50.75 29.91 68.60 2.05 52.80 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 N -0.69 -29.51 6.21 -495.47 -3.08 -32.59 16 14 C 0.06 2.16 5.51 86.30 0.48 2.63 16 15 C -0.10 -2.77 5.48 30.59 0.17 -2.60 16 16 C -0.08 -1.91 5.50 30.59 0.17 -1.74 16 17 C -0.16 -3.26 5.73 -10.79 -0.06 -3.32 16 18 C -0.18 -3.09 10.18 30.62 0.31 -2.77 16 19 C -0.18 -3.05 10.25 30.62 0.31 -2.73 16 20 H 0.05 2.23 6.95 -2.39 -0.02 2.21 16 21 H 0.06 1.99 6.55 -2.39 -0.02 1.97 16 22 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 23 H 0.04 1.54 7.58 -2.39 -0.02 1.53 16 24 H 0.04 1.97 6.32 -2.39 -0.02 1.95 16 25 H 0.26 15.80 5.93 -92.71 -0.55 15.25 16 26 H 0.33 13.33 6.54 -89.69 -0.59 12.74 16 27 H 0.05 1.79 7.93 -2.39 -0.02 1.77 16 28 H 0.02 0.65 7.59 -2.39 -0.02 0.63 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.43 7.87 -2.38 -0.02 1.42 16 33 H 0.10 2.09 8.08 -2.39 -0.02 2.07 16 34 H 0.09 1.59 8.03 -2.39 -0.02 1.57 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -62.24 293.80 2.84 -59.40 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.65 Total: 21.77 kcal Atomic # 6 Polarization: -47.31 SS G_CDS: 2.93 Total: -44.38 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -2.80 Total: -89.59 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.05 Total: 52.80 kcal Total: -62.24 2.84 -59.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156994821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.818 kcal (2) G-P(sol) polarization free energy of solvation -62.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds