Wall clock time and date at job start Sun Mar 29 2020 21:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47141 * 2 1 4 4 C 1.36934 * 119.99948 * 87.13638 * 3 2 1 5 5 H 1.07998 * 119.99769 * 324.14853 * 4 3 2 6 6 C 1.38812 * 120.00071 * 144.14593 * 4 3 2 7 7 N 1.31619 * 120.00099 * 156.41405 * 6 4 3 8 8 Si 1.86796 * 120.00009 * 336.41607 * 6 4 3 9 9 H 1.48499 * 109.47204 * 95.15592 * 8 6 4 10 10 H 1.48498 * 109.47187 * 215.15389 * 8 6 4 11 11 H 1.48497 * 109.47108 * 335.15614 * 8 6 4 12 12 C 1.46503 * 119.99701 * 267.12891 * 3 2 1 13 13 C 1.50707 * 109.46541 * 90.00744 * 12 3 2 14 14 C 1.33630 * 126.03882 * 89.99713 * 13 12 3 15 15 N 1.31789 * 114.50084 * 179.97438 * 14 13 12 16 16 C 1.29033 * 117.12065 * 0.02562 * 15 14 13 17 17 S 1.70980 * 110.16738 * 359.72185 * 16 15 14 18 18 H 1.09003 * 109.47598 * 65.47953 * 1 2 3 19 19 H 1.09004 * 109.47542 * 185.48419 * 1 2 3 20 20 H 1.09001 * 109.47430 * 305.48093 * 1 2 3 21 21 H 1.09007 * 109.47073 * 239.99710 * 2 1 3 22 22 H 1.09000 * 109.47090 * 120.00394 * 2 1 3 23 23 H 0.96999 * 119.99953 * 179.97438 * 7 6 4 24 24 H 1.09003 * 109.47096 * 210.00033 * 12 3 2 25 25 H 1.08994 * 109.47269 * 330.00316 * 12 3 2 26 26 H 1.07997 * 122.75346 * 0.02562 * 14 13 12 27 27 H 1.07996 * 124.91162 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1907 2.0465 1.1844 5 1 1.5061 1.8785 2.0026 6 6 3.2453 2.9367 1.3334 7 7 3.1742 3.8969 2.2307 8 14 4.7653 2.7719 0.2602 9 1 4.6414 3.6712 -0.9150 10 1 5.9686 3.1466 1.0455 11 1 4.8942 1.3669 -0.2030 12 6 2.3224 2.0506 -1.2672 13 6 1.0887 2.7532 -1.7727 14 6 0.7316 4.0111 -1.4968 15 7 -0.3950 4.3958 -2.0619 16 6 -1.0084 3.5323 -2.7988 17 16 -0.1338 2.0636 -2.8378 18 1 -0.3634 0.4265 -0.9350 19 1 -0.3634 -1.0230 0.0982 20 1 -0.3634 0.5965 0.8368 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8899 23 1 3.9113 4.5187 2.3351 24 1 3.1175 2.7797 -1.1113 25 1 2.6456 1.3115 -2.0001 26 1 1.3186 4.6595 -0.8633 27 1 -1.9370 3.7129 -3.3198 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157711498.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:17 Heat of formation + Delta-G solvation = 70.237043 kcal Electronic energy + Delta-G solvation = -12334.816201 eV Core-core repulsion = 10220.635664 eV Total energy + Delta-G solvation = -2114.180537 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.98773 -36.37100 -32.05005 -31.25379 -28.97511 -26.21649 -24.14258 -23.22890 -20.50497 -19.50479 -17.76158 -16.60488 -15.73778 -14.68254 -14.31475 -13.70820 -13.54687 -13.33286 -13.03032 -12.42141 -12.31657 -11.94907 -11.48823 -10.98587 -10.88056 -10.70778 -10.19287 -10.00874 -9.74072 -9.13673 -8.62437 -8.58135 -8.30154 -7.02728 -6.11683 -3.50014 1.30770 1.93605 2.31265 3.21020 3.39303 3.42961 3.48976 4.40492 4.86635 4.93534 5.24114 5.68656 5.77331 5.84924 5.87309 6.17539 6.22226 6.36209 6.46146 6.51191 6.72506 6.86434 7.01101 7.90042 8.26555 8.29192 8.83806 9.57434 9.95947 11.03008 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.013646 C = 0.011647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.797723 B = 2051.318551 C = 2403.445829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.143 3.857 3 N -0.590 5.590 4 C -0.268 4.268 5 H 0.080 0.920 6 C 0.039 3.961 7 N -0.888 5.888 8 Si 0.869 3.131 9 H -0.282 1.282 10 H -0.297 1.297 11 H -0.266 1.266 12 C 0.199 3.801 13 C -0.183 4.183 14 C 0.025 3.975 15 N -0.465 5.465 16 C -0.010 4.010 17 S 0.071 5.929 18 H 0.051 0.949 19 H 0.041 0.959 20 H 0.054 0.946 21 H 0.038 0.962 22 H 0.057 0.943 23 H 0.266 0.734 24 H 0.077 0.923 25 H 0.055 0.945 26 H 0.174 0.826 27 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 -4.979 -9.767 11.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.017 3.983 3 N -0.311 5.311 4 C -0.397 4.397 5 H 0.098 0.902 6 C -0.163 4.163 7 N -0.527 5.527 8 Si 0.698 3.302 9 H -0.210 1.210 10 H -0.225 1.225 11 H -0.191 1.191 12 C 0.070 3.930 13 C -0.307 4.307 14 C -0.124 4.124 15 N -0.179 5.179 16 C -0.308 4.308 17 S 0.320 5.680 18 H 0.070 0.930 19 H 0.060 0.940 20 H 0.073 0.927 21 H 0.056 0.944 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.191 0.809 27 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -4.434 -5.255 -10.053 12.180 hybrid contribution 1.068 0.713 0.091 1.288 sum -3.366 -4.541 -9.962 11.454 Atomic orbital electron populations 1.22409 0.99279 0.99695 1.02079 1.20930 0.92448 0.85367 0.99522 1.44250 1.76590 1.08970 1.01281 1.18757 1.08576 1.21338 0.91032 0.90200 1.25426 0.97635 0.96623 0.96574 1.69898 1.31977 1.14456 1.36392 0.87062 0.84512 0.78885 0.79725 1.21023 1.22483 1.19110 1.19944 0.90050 0.95092 0.87905 1.27517 1.04116 0.97813 1.01277 1.21713 0.93797 0.95071 1.01836 1.66268 1.08116 1.34637 1.08844 1.28055 1.05291 0.92813 1.04658 1.83678 1.18801 1.19743 1.45797 0.93015 0.94040 0.92726 0.94386 0.92421 0.92433 0.90573 0.92639 0.80856 0.79576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 10.23 37.16 0.38 -2.72 15 2 C 0.14 2.76 6.43 -4.04 -0.03 2.73 15 3 N -0.59 -13.54 2.09 -174.61 -0.37 -13.90 15 4 C -0.27 -7.23 9.93 -15.06 -0.15 -7.38 15 5 H 0.08 2.36 8.06 -52.49 -0.42 1.94 15 6 C 0.04 1.08 5.29 -17.43 -0.09 0.99 15 7 N -0.89 -26.12 13.97 55.49 0.78 -25.34 15 8 Si 0.87 21.03 25.06 -169.99 -4.26 16.76 15 9 H -0.28 -6.61 6.64 56.52 0.38 -6.23 15 10 H -0.30 -7.34 7.11 56.52 0.40 -6.94 15 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 12 C 0.20 4.22 5.09 -5.19 -0.03 4.19 15 13 C -0.18 -3.67 6.13 -35.92 -0.22 -3.89 15 14 C 0.03 0.54 11.25 -19.18 -0.22 0.32 15 15 N -0.47 -9.16 10.54 -15.75 -0.17 -9.33 15 16 C -0.01 -0.16 12.23 51.59 0.63 0.47 15 17 S 0.07 1.12 21.17 -107.50 -2.28 -1.15 15 18 H 0.05 0.90 5.86 -51.93 -0.30 0.59 15 19 H 0.04 0.62 8.14 -51.93 -0.42 0.19 15 20 H 0.05 1.09 8.14 -51.93 -0.42 0.66 15 21 H 0.04 0.65 7.86 -51.92 -0.41 0.25 15 22 H 0.06 1.12 8.06 -51.93 -0.42 0.70 15 23 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 24 H 0.08 1.75 3.13 -51.93 -0.16 1.59 15 25 H 0.06 1.04 7.87 -51.93 -0.41 0.63 15 26 H 0.17 3.91 8.06 -52.49 -0.42 3.49 15 27 H 0.19 2.24 8.06 -52.49 -0.42 1.82 15 LS Contribution 241.82 15.07 3.64 3.64 Total: -1.00 -29.38 241.82 -5.35 -34.73 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -2.98 Total: -0.13 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 0.28 Total: -5.29 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.24 Total: -48.57 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.26 Total: 16.76 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.28 Total: -1.15 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.38 -5.35 -34.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157711498.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.965 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds