Wall clock time and date at job start Sun Mar 29 2020 21:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47141 * 2 1 4 4 C 1.36934 * 119.99948 * 87.13638 * 3 2 1 5 5 H 1.07998 * 119.99769 * 324.14853 * 4 3 2 6 6 C 1.38812 * 120.00071 * 144.14593 * 4 3 2 7 7 N 1.31619 * 120.00099 * 156.41405 * 6 4 3 8 8 Si 1.86796 * 120.00009 * 336.41607 * 6 4 3 9 9 H 1.48499 * 109.47204 * 95.15592 * 8 6 4 10 10 H 1.48498 * 109.47187 * 215.15389 * 8 6 4 11 11 H 1.48497 * 109.47108 * 335.15614 * 8 6 4 12 12 C 1.46503 * 119.99701 * 267.12891 * 3 2 1 13 13 C 1.50707 * 109.46541 * 90.00744 * 12 3 2 14 14 C 1.33630 * 126.03882 * 89.99713 * 13 12 3 15 15 N 1.31789 * 114.50084 * 179.97438 * 14 13 12 16 16 C 1.29033 * 117.12065 * 0.02562 * 15 14 13 17 17 S 1.70980 * 110.16738 * 359.72185 * 16 15 14 18 18 H 1.09003 * 109.47598 * 65.47953 * 1 2 3 19 19 H 1.09004 * 109.47542 * 185.48419 * 1 2 3 20 20 H 1.09001 * 109.47430 * 305.48093 * 1 2 3 21 21 H 1.09007 * 109.47073 * 239.99710 * 2 1 3 22 22 H 1.09000 * 109.47090 * 120.00394 * 2 1 3 23 23 H 0.96999 * 119.99953 * 179.97438 * 7 6 4 24 24 H 1.09003 * 109.47096 * 210.00033 * 12 3 2 25 25 H 1.08994 * 109.47269 * 330.00316 * 12 3 2 26 26 H 1.07997 * 122.75346 * 0.02562 * 14 13 12 27 27 H 1.07996 * 124.91162 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1907 2.0465 1.1844 5 1 1.5061 1.8785 2.0026 6 6 3.2453 2.9367 1.3334 7 7 3.1742 3.8969 2.2307 8 14 4.7653 2.7719 0.2602 9 1 4.6414 3.6712 -0.9150 10 1 5.9686 3.1466 1.0455 11 1 4.8942 1.3669 -0.2030 12 6 2.3224 2.0506 -1.2672 13 6 1.0887 2.7532 -1.7727 14 6 0.7316 4.0111 -1.4968 15 7 -0.3950 4.3958 -2.0619 16 6 -1.0084 3.5323 -2.7988 17 16 -0.1338 2.0636 -2.8378 18 1 -0.3634 0.4265 -0.9350 19 1 -0.3634 -1.0230 0.0982 20 1 -0.3634 0.5965 0.8368 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8899 23 1 3.9113 4.5187 2.3351 24 1 3.1175 2.7797 -1.1113 25 1 2.6456 1.3115 -2.0001 26 1 1.3186 4.6595 -0.8633 27 1 -1.9370 3.7129 -3.3198 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157711498.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:17 Heat of formation + Delta-G solvation = 50.532239 kcal Electronic energy + Delta-G solvation = -12335.670665 eV Core-core repulsion = 10220.635664 eV Total energy + Delta-G solvation = -2115.035001 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.48360 -38.08521 -34.05302 -32.78642 -30.63332 -27.85973 -25.87773 -24.76903 -22.21272 -21.03855 -19.36058 -18.36844 -17.51250 -16.36696 -15.94041 -15.31660 -15.17740 -14.79316 -14.64736 -14.17958 -14.08940 -13.55871 -13.05960 -12.63768 -12.54135 -12.44644 -11.91522 -11.72439 -11.55377 -10.65337 -10.54192 -10.01653 -9.73289 -8.89252 -8.22568 -5.59633 -0.10190 0.55342 0.88694 1.29227 1.41716 1.52071 1.96230 2.39403 3.02215 3.40714 3.55620 4.10436 4.24973 4.38807 4.46145 4.60267 4.74949 4.81269 4.96618 5.04153 5.22727 5.28296 5.53681 5.89542 6.15684 6.85224 6.92255 7.57668 7.98100 8.96781 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.013646 C = 0.011647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.797723 B = 2051.318551 C = 2403.445829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 N -0.603 5.603 4 C -0.257 4.257 5 H 0.036 0.964 6 C -0.015 4.015 7 N -0.942 5.942 8 Si 0.934 3.066 9 H -0.273 1.273 10 H -0.307 1.307 11 H -0.249 1.249 12 C 0.197 3.803 13 C -0.216 4.216 14 C 0.010 3.990 15 N -0.501 5.501 16 C 0.003 3.997 17 S 0.160 5.840 18 H 0.057 0.943 19 H 0.074 0.926 20 H 0.020 0.980 21 H 0.072 0.928 22 H 0.050 0.950 23 H 0.264 0.736 24 H 0.054 0.946 25 H 0.088 0.912 26 H 0.141 0.859 27 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.996 -6.908 -12.833 15.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.011 3.989 3 N -0.325 5.325 4 C -0.387 4.387 5 H 0.054 0.946 6 C -0.212 4.212 7 N -0.585 5.585 8 Si 0.762 3.238 9 H -0.200 1.200 10 H -0.236 1.236 11 H -0.173 1.173 12 C 0.069 3.931 13 C -0.340 4.340 14 C -0.140 4.140 15 N -0.216 5.216 16 C -0.295 4.295 17 S 0.410 5.590 18 H 0.076 0.924 19 H 0.093 0.907 20 H 0.040 0.960 21 H 0.090 0.910 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.106 0.894 26 H 0.159 0.841 27 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -5.315 -7.228 -13.162 15.929 hybrid contribution 1.127 1.259 0.929 1.928 sum -4.188 -5.969 -12.234 14.242 Atomic orbital electron populations 1.22301 0.98051 1.01186 1.00888 1.21139 0.93370 0.83639 1.00777 1.44307 1.77208 1.10420 1.00539 1.18523 1.07303 1.20963 0.91894 0.94602 1.26006 1.00397 0.96371 0.98406 1.70029 1.32833 1.16079 1.39540 0.85997 0.79942 0.79719 0.78094 1.19997 1.23552 1.17264 1.19889 0.90137 0.95366 0.87709 1.27279 1.05334 0.98060 1.03300 1.21468 0.94674 0.95567 1.02310 1.66267 1.08306 1.36241 1.10744 1.28903 1.05752 0.92510 1.02313 1.83269 1.15451 1.17560 1.42695 0.92420 0.90721 0.96039 0.91016 0.93200 0.92729 0.92858 0.89360 0.84119 0.75097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.45 10.23 71.98 0.74 -4.71 15 2 C 0.13 4.91 6.43 86.38 0.56 5.47 15 3 N -0.60 -27.19 2.09 -706.33 -1.48 -28.66 15 4 C -0.26 -14.29 9.93 84.03 0.83 -13.46 15 5 H 0.04 2.27 8.06 -2.91 -0.02 2.24 15 6 C -0.01 -0.83 5.29 84.86 0.45 -0.38 15 7 N -0.94 -58.31 13.97 21.65 0.30 -58.01 15 8 Si 0.93 44.34 25.06 68.60 1.72 46.06 15 9 H -0.27 -12.36 6.64 99.48 0.66 -11.70 15 10 H -0.31 -14.89 7.11 99.48 0.71 -14.19 15 11 H -0.25 -10.97 7.11 99.48 0.71 -10.26 15 12 C 0.20 8.00 5.09 85.63 0.44 8.43 15 13 C -0.22 -8.28 6.13 24.64 0.15 -8.13 15 14 C 0.01 0.42 11.25 83.65 0.94 1.36 15 15 N -0.50 -19.07 10.54 -203.75 -2.15 -21.22 15 16 C 0.00 0.08 12.23 130.65 1.60 1.68 15 17 S 0.16 4.39 21.17 -56.49 -1.20 3.20 15 18 H 0.06 1.79 5.86 -2.39 -0.01 1.78 15 19 H 0.07 1.96 8.14 -2.38 -0.02 1.94 15 20 H 0.02 0.82 8.14 -2.39 -0.02 0.80 15 21 H 0.07 2.15 7.86 -2.38 -0.02 2.13 15 22 H 0.05 1.87 8.06 -2.39 -0.02 1.85 15 23 H 0.26 15.49 8.31 -92.71 -0.77 14.72 15 24 H 0.05 2.40 3.13 -2.39 -0.01 2.39 15 25 H 0.09 2.96 7.87 -2.39 -0.02 2.94 15 26 H 0.14 6.76 8.06 -2.91 -0.02 6.74 15 27 H 0.23 4.26 8.06 -2.91 -0.02 4.23 15 Total: -1.00 -66.78 241.82 4.02 -62.77 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 1.12 Total: 5.62 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 5.70 Total: -9.75 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -3.32 Total: -107.89 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.72 Total: 46.06 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -1.20 Total: 3.20 kcal Total: -66.78 4.02 -62.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157711498.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.298 kcal (2) G-P(sol) polarization free energy of solvation -66.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds