Wall clock time and date at job start Sun Mar 29 2020 21:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86811 * 119.99631 * 2 1 4 4 H 1.48506 * 109.46642 * 269.99835 * 3 2 1 5 5 H 1.48502 * 109.47012 * 29.99527 * 3 2 1 6 6 H 1.48495 * 109.47152 * 149.99773 * 3 2 1 7 7 C 1.37875 * 120.00777 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99354 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00355 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46999 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47053 * 179.97438 * 10 9 7 12 12 C 1.46895 * 110.99789 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47030 * 179.97438 * 12 11 10 14 14 C 1.33641 * 126.03432 * 89.99914 * 13 12 11 15 15 N 1.31785 * 114.49438 * 180.02562 * 14 13 12 16 16 C 1.29024 * 117.13149 * 359.97438 * 15 14 13 17 17 S 1.70979 * 110.16293 * 359.72847 * 16 15 14 18 18 H 0.96999 * 120.00276 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47328 * 60.00043 * 9 7 2 20 20 H 1.09004 * 109.47043 * 299.99853 * 9 7 2 21 21 H 1.08992 * 109.47056 * 59.99641 * 10 9 7 22 22 H 1.09004 * 109.47006 * 299.99757 * 10 9 7 23 23 H 1.00902 * 111.00068 * 56.04103 * 11 10 9 24 24 H 1.08996 * 109.47424 * 299.99656 * 12 11 10 25 25 H 1.09002 * 109.47411 * 60.00282 * 12 11 10 26 26 H 1.07997 * 122.75433 * 359.97438 * 14 13 12 27 27 H 1.08000 * 124.92117 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1938 0.0011 10 6 4.0217 -2.6363 0.0010 11 7 5.4908 -2.6362 0.0009 12 6 6.0172 -4.0076 0.0014 13 6 7.5237 -3.9673 0.0007 14 6 8.3101 -3.9457 1.0811 15 7 9.6007 -3.9108 0.8168 16 6 9.9468 -3.9023 -0.4261 17 16 8.5596 -3.9483 -1.4245 18 1 -0.4850 0.8400 -0.0004 19 1 3.8746 -0.6798 0.8911 20 1 3.8753 -0.6802 -0.8889 21 1 3.6587 -3.1499 -0.8891 22 1 3.6581 -3.1504 0.8908 23 1 5.8524 -2.1101 0.7823 24 1 5.6679 -4.5306 0.8916 25 1 5.6678 -4.5313 -0.8884 26 1 7.9200 -3.9552 2.0881 27 1 10.9654 -3.8753 -0.7840 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164246799.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:12 Heat of formation + Delta-G solvation = 38.503570 kcal Electronic energy + Delta-G solvation = -11263.889298 eV Core-core repulsion = 9148.332695 eV Total energy + Delta-G solvation = -2115.556604 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.67098 -36.32496 -33.17283 -31.48829 -29.23704 -26.39705 -24.29561 -22.85297 -20.52265 -20.04080 -18.13180 -16.80181 -15.66816 -15.41625 -14.76533 -14.24534 -14.00564 -13.70595 -13.40871 -12.80013 -12.55231 -12.20910 -11.46866 -11.23819 -11.01819 -10.22279 -9.97736 -9.82113 -9.69760 -9.33373 -9.24326 -9.02493 -8.55846 -8.08364 -6.06595 -4.05466 0.63703 1.31528 1.72444 2.76059 3.31830 3.38795 3.43456 4.25476 4.44467 4.59765 4.93566 5.12394 5.18188 5.27990 5.56523 5.72654 6.06169 6.10685 6.18051 6.70446 7.02528 7.32807 7.48512 7.60215 7.65506 7.82525 8.49868 8.96946 9.55580 11.06590 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.059931 B = 0.005542 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.090154 B = 5051.146219 C = 5193.679094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.073 3.927 11 N -0.690 5.690 12 C 0.131 3.869 13 C -0.199 4.199 14 C 0.025 3.975 15 N -0.472 5.472 16 C 0.001 3.999 17 S 0.143 5.857 18 H 0.263 0.737 19 H 0.014 0.986 20 H 0.021 0.979 21 H 0.067 0.933 22 H 0.026 0.974 23 H 0.339 0.661 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.173 0.827 27 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.480 -8.103 -1.328 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.047 4.047 10 C -0.055 4.055 11 N -0.322 5.322 12 C 0.000 4.000 13 C -0.321 4.321 14 C -0.127 4.127 15 N -0.185 5.185 16 C -0.296 4.296 17 S 0.395 5.605 18 H 0.073 0.927 19 H 0.032 0.968 20 H 0.040 0.960 21 H 0.085 0.915 22 H 0.044 0.956 23 H 0.156 0.844 24 H 0.069 0.931 25 H 0.102 0.898 26 H 0.190 0.810 27 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 17.663 -7.925 -2.685 19.545 hybrid contribution -0.093 0.682 1.759 1.889 sum 17.570 -7.244 -0.926 19.027 Atomic orbital electron populations 1.69911 1.06322 1.26976 1.50984 1.25006 0.94735 0.99231 0.94416 0.86735 0.80271 0.83402 0.78604 1.20210 1.21464 1.18995 1.21050 0.89287 0.94561 1.51228 0.91059 1.19546 0.96723 0.91637 0.96840 1.22006 0.83264 1.00423 0.99785 1.60689 1.10241 1.11109 1.50120 1.20282 0.85444 0.92406 1.01910 1.26066 1.01426 1.09684 0.94942 1.21760 0.87024 1.03682 1.00187 1.66304 1.17776 1.15076 1.19380 1.28339 1.04191 1.05446 0.91657 1.84093 0.98451 1.66406 1.11572 0.92680 0.96783 0.96031 0.91488 0.95619 0.84365 0.93127 0.89816 0.81006 0.78753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.86 13.96 55.43 0.77 -27.09 15 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 15 3 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 15 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 15 7 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 15 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 15 9 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 15 10 C 0.07 1.43 5.62 -3.82 -0.02 1.40 15 11 N -0.69 -11.28 6.49 -115.06 -0.75 -12.02 15 12 C 0.13 1.73 6.22 -4.98 -0.03 1.70 15 13 C -0.20 -2.48 6.11 -35.92 -0.22 -2.70 15 14 C 0.03 0.31 11.25 -19.18 -0.22 0.10 15 15 N -0.47 -6.05 10.54 -15.75 -0.17 -6.21 15 16 C 0.00 0.01 12.23 51.58 0.63 0.64 15 17 S 0.14 1.53 23.22 -107.50 -2.50 -0.96 15 18 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 19 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 15 20 H 0.02 0.52 7.57 -51.93 -0.39 0.13 15 21 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 22 H 0.03 0.49 8.14 -51.93 -0.42 0.07 15 23 H 0.34 5.35 8.72 -39.29 -0.34 5.01 15 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 25 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 26 H 0.17 1.85 8.06 -52.49 -0.42 1.43 15 27 H 0.20 1.33 8.06 -52.49 -0.42 0.90 15 LS Contribution 251.77 15.07 3.79 3.79 Total: -1.00 -31.41 251.77 -7.15 -38.56 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -3.23 Total: -0.76 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -0.41 Total: -12.53 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -0.14 Total: -45.33 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.50 Total: -0.96 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.41 -7.15 -38.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164246799.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.067 kcal (2) G-P(sol) polarization free energy of solvation -31.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds