Wall clock time and date at job start Sun Mar 29 2020 21:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86811 * 119.99631 * 2 1 4 4 H 1.48506 * 109.46642 * 269.99835 * 3 2 1 5 5 H 1.48502 * 109.47012 * 29.99527 * 3 2 1 6 6 H 1.48495 * 109.47152 * 149.99773 * 3 2 1 7 7 C 1.37875 * 120.00777 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99354 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00355 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46999 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47053 * 179.97438 * 10 9 7 12 12 C 1.46895 * 110.99789 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47030 * 179.97438 * 12 11 10 14 14 C 1.33641 * 126.03432 * 89.99914 * 13 12 11 15 15 N 1.31785 * 114.49438 * 180.02562 * 14 13 12 16 16 C 1.29024 * 117.13149 * 359.97438 * 15 14 13 17 17 S 1.70979 * 110.16293 * 359.72847 * 16 15 14 18 18 H 0.96999 * 120.00276 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47328 * 60.00043 * 9 7 2 20 20 H 1.09004 * 109.47043 * 299.99853 * 9 7 2 21 21 H 1.08992 * 109.47056 * 59.99641 * 10 9 7 22 22 H 1.09004 * 109.47006 * 299.99757 * 10 9 7 23 23 H 1.00902 * 111.00068 * 56.04103 * 11 10 9 24 24 H 1.08996 * 109.47424 * 299.99656 * 12 11 10 25 25 H 1.09002 * 109.47411 * 60.00282 * 12 11 10 26 26 H 1.07997 * 122.75433 * 359.97438 * 14 13 12 27 27 H 1.08000 * 124.92117 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1938 0.0011 10 6 4.0217 -2.6363 0.0010 11 7 5.4908 -2.6362 0.0009 12 6 6.0172 -4.0076 0.0014 13 6 7.5237 -3.9673 0.0007 14 6 8.3101 -3.9457 1.0811 15 7 9.6007 -3.9108 0.8168 16 6 9.9468 -3.9023 -0.4261 17 16 8.5596 -3.9483 -1.4245 18 1 -0.4850 0.8400 -0.0004 19 1 3.8746 -0.6798 0.8911 20 1 3.8753 -0.6802 -0.8889 21 1 3.6587 -3.1499 -0.8891 22 1 3.6581 -3.1504 0.8908 23 1 5.8524 -2.1101 0.7823 24 1 5.6679 -4.5306 0.8916 25 1 5.6678 -4.5313 -0.8884 26 1 7.9200 -3.9552 2.0881 27 1 10.9654 -3.8753 -0.7840 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164246799.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:12 Heat of formation + Delta-G solvation = 15.589948 kcal Electronic energy + Delta-G solvation = -11264.882907 eV Core-core repulsion = 9148.332695 eV Total energy + Delta-G solvation = -2116.550213 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.56300 -37.69455 -35.12386 -33.04757 -30.71467 -27.58356 -25.75487 -24.11096 -22.31258 -20.93292 -19.06493 -18.96263 -16.77075 -16.60832 -16.30744 -15.78111 -15.07806 -14.84100 -14.77391 -14.62121 -13.93305 -13.53814 -13.14644 -12.88179 -12.27105 -11.94077 -11.83199 -11.69011 -11.42133 -10.77454 -10.58212 -10.24716 -9.91260 -9.38161 -8.30282 -6.34882 -0.22825 0.47374 0.87227 1.37771 1.38464 1.51063 1.86835 2.36312 3.05482 3.31782 3.51027 3.92658 4.15520 4.40576 4.44866 4.50008 4.60779 4.81308 4.95627 5.19749 5.26268 5.47845 5.61929 6.03116 6.23374 6.42641 6.73584 6.75168 7.30242 8.86218 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.059931 B = 0.005542 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.090154 B = 5051.146219 C = 5193.679094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.953 3.047 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.248 1.248 7 C -0.534 4.534 8 H 0.034 0.966 9 C -0.005 4.005 10 C 0.087 3.913 11 N -0.692 5.692 12 C 0.135 3.865 13 C -0.222 4.222 14 C 0.024 3.976 15 N -0.503 5.503 16 C 0.013 3.987 17 S 0.159 5.841 18 H 0.267 0.733 19 H 0.019 0.981 20 H 0.021 0.979 21 H 0.061 0.939 22 H 0.024 0.976 23 H 0.343 0.657 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.181 0.819 27 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.863 -7.637 -1.514 21.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.572 4.572 8 H 0.053 0.947 9 C -0.043 4.043 10 C -0.042 4.042 11 N -0.323 5.323 12 C 0.005 3.995 13 C -0.344 4.344 14 C -0.128 4.128 15 N -0.216 5.216 16 C -0.284 4.284 17 S 0.412 5.588 18 H 0.076 0.924 19 H 0.038 0.962 20 H 0.039 0.961 21 H 0.079 0.921 22 H 0.042 0.958 23 H 0.161 0.839 24 H 0.079 0.921 25 H 0.104 0.896 26 H 0.198 0.802 27 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 20.068 -7.481 -2.876 21.609 hybrid contribution -0.808 0.438 1.787 2.009 sum 19.260 -7.043 -1.090 20.536 Atomic orbital electron populations 1.70060 1.08275 1.28224 1.52533 1.25990 0.95605 1.03521 0.94033 0.85612 0.79384 0.78173 0.79147 1.19320 1.21004 1.17114 1.21412 0.91911 0.93279 1.50626 0.94726 1.19439 0.93547 0.94523 0.96791 1.21656 0.85476 0.97517 0.99530 1.60570 1.07912 1.13336 1.50502 1.20232 0.86165 0.90589 1.02541 1.25950 1.00966 1.11499 0.95940 1.21970 0.87142 1.02915 1.00737 1.66368 1.17930 1.16784 1.20556 1.28964 1.05576 1.02898 0.90946 1.84044 0.98145 1.65909 1.10722 0.92436 0.96244 0.96087 0.92063 0.95752 0.83875 0.92083 0.89637 0.80158 0.75427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.74 13.96 21.45 0.30 -59.44 15 2 C 0.01 0.32 5.47 84.65 0.46 0.78 15 3 Si 0.95 44.65 27.47 68.60 1.88 46.53 15 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 5 H -0.28 -13.02 7.11 99.48 0.71 -12.32 15 6 H -0.25 -10.80 6.54 99.48 0.65 -10.14 15 7 C -0.53 -30.78 9.66 25.60 0.25 -30.54 15 8 H 0.03 2.18 7.99 -2.91 -0.02 2.15 15 9 C -0.01 -0.24 4.30 29.85 0.13 -0.11 15 10 C 0.09 3.32 5.62 86.30 0.49 3.81 15 11 N -0.69 -21.43 6.49 -517.93 -3.36 -24.79 15 12 C 0.14 3.36 6.22 85.56 0.53 3.90 15 13 C -0.22 -5.10 6.11 24.64 0.15 -4.95 15 14 C 0.02 0.56 11.25 83.66 0.94 1.50 15 15 N -0.50 -11.77 10.54 -203.74 -2.15 -13.92 15 16 C 0.01 0.23 12.23 130.66 1.60 1.83 15 17 S 0.16 3.05 23.22 -56.49 -1.31 1.74 15 18 H 0.27 15.62 8.31 -92.71 -0.77 14.85 15 19 H 0.02 0.88 7.20 -2.39 -0.02 0.86 15 20 H 0.02 0.98 7.57 -2.38 -0.02 0.96 15 21 H 0.06 2.39 8.14 -2.39 -0.02 2.37 15 22 H 0.02 0.93 8.14 -2.38 -0.02 0.91 15 23 H 0.34 10.17 8.72 -89.69 -0.78 9.38 15 24 H 0.06 1.40 8.14 -2.39 -0.02 1.38 15 25 H 0.09 2.08 8.14 -2.39 -0.02 2.06 15 26 H 0.18 3.60 8.06 -2.91 -0.02 3.58 15 27 H 0.23 2.26 8.06 -2.91 -0.02 2.23 15 Total: -1.00 -67.05 251.77 0.24 -66.82 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 0.33 Total: 6.84 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: 4.55 Total: -23.78 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -5.21 Total: -98.15 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.31 Total: 1.74 kcal Total: -67.05 0.24 -66.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164246799.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.405 kcal (2) G-P(sol) polarization free energy of solvation -67.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds