Wall clock time and date at job start Sun Mar 29 2020 21:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00327 * 2 1 4 4 H 1.48505 * 109.46924 * 270.00325 * 3 2 1 5 5 H 1.48495 * 109.47005 * 29.99823 * 3 2 1 6 6 H 1.48491 * 109.47131 * 150.00217 * 3 2 1 7 7 C 1.37877 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00144 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00126 * 179.97438 * 7 2 1 10 10 C 1.50699 * 109.47424 * 179.97438 * 9 7 2 11 11 C 1.38282 * 119.95773 * 89.99703 * 10 9 7 12 12 C 1.38249 * 120.12038 * 180.02562 * 11 10 9 13 13 C 1.38253 * 120.04031 * 359.97438 * 12 11 10 14 14 Cl 1.73601 * 120.03985 * 179.97438 * 13 12 11 15 15 C 1.38815 * 119.92352 * 359.97438 * 13 12 11 16 16 O 1.35930 * 120.05782 * 179.72500 * 15 13 12 17 17 C 1.38150 * 119.96523 * 269.98028 * 10 9 7 18 18 H 0.97008 * 119.99800 * 359.97438 * 1 2 3 19 19 H 1.09006 * 109.47117 * 59.99715 * 9 7 2 20 20 H 1.08992 * 109.47245 * 299.99596 * 9 7 2 21 21 H 1.08001 * 119.93807 * 0.02562 * 11 10 9 22 22 H 1.07993 * 119.97902 * 179.97438 * 12 11 10 23 23 H 0.96698 * 114.00235 * 90.00526 * 16 15 13 24 24 H 1.07998 * 120.02187 * 359.97438 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0137 -2.6150 -0.0010 11 6 4.2434 -3.2663 -1.1990 12 6 4.7037 -4.5699 -1.2028 13 6 4.9360 -5.2254 -0.0079 14 17 5.5134 -6.8625 -0.0127 15 6 4.7071 -4.5728 1.1957 16 8 4.9293 -5.2165 2.3722 17 6 4.2446 -3.2652 1.1959 18 1 -0.4850 0.8401 0.0004 19 1 3.8751 -0.6805 0.8889 20 1 3.8744 -0.6803 -0.8911 21 1 4.0628 -2.7557 -2.1334 22 1 4.8819 -5.0766 -2.1397 23 1 5.8279 -5.1124 2.7139 24 1 4.0656 -2.7554 2.1310 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214290450.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:43 Heat of formation + Delta-G solvation = -36.798049 kcal Electronic energy + Delta-G solvation = -11395.313652 eV Core-core repulsion = 9106.322173 eV Total energy + Delta-G solvation = -2288.991479 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.034 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.44762 -36.64659 -36.23226 -33.30359 -31.39700 -29.59390 -27.53158 -23.17621 -22.38402 -20.60301 -17.75012 -16.86260 -16.33194 -15.65788 -14.98793 -14.26884 -13.67943 -13.25052 -12.69917 -12.54674 -12.07264 -11.93944 -11.32836 -11.30180 -10.94100 -10.57402 -10.46411 -10.04920 -9.97927 -9.45738 -8.66107 -8.46629 -7.94771 -6.14545 -4.15312 1.51646 1.62706 2.40279 3.23021 3.31526 3.32668 3.96757 4.34240 4.36161 5.12395 5.20636 5.51248 5.65563 5.83768 6.00277 6.17087 6.52608 6.66304 6.72998 6.85129 7.13055 7.34401 7.58128 7.80785 8.39803 8.89987 9.44250 10.98114 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.059480 B = 0.007258 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.635101 B = 3857.059908 C = 3960.499355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.075 0.925 9 C 0.013 3.987 10 C -0.008 4.008 11 C -0.118 4.118 12 C -0.099 4.099 13 C -0.085 4.085 14 Cl -0.081 7.081 15 C 0.111 3.889 16 O -0.490 6.490 17 C -0.134 4.134 18 H 0.265 0.735 19 H 0.031 0.969 20 H 0.028 0.972 21 H 0.132 0.868 22 H 0.129 0.871 23 H 0.384 0.616 24 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.167 -7.226 0.125 14.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.093 0.907 9 C -0.024 4.024 10 C -0.009 4.009 11 C -0.136 4.136 12 C -0.117 4.117 13 C -0.112 4.112 14 Cl -0.052 7.052 15 C 0.065 3.935 16 O -0.299 6.299 17 C -0.153 4.153 18 H 0.075 0.925 19 H 0.049 0.951 20 H 0.047 0.953 21 H 0.150 0.850 22 H 0.147 0.853 23 H 0.240 0.760 24 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.459 -7.427 0.073 13.656 hybrid contribution 0.755 0.811 0.055 1.110 sum 12.214 -6.615 0.129 13.891 Atomic orbital electron populations 1.69898 1.06272 1.27112 1.50111 1.24998 0.94765 0.99055 0.94339 0.86794 0.80356 0.83607 0.78691 1.20073 1.21137 1.18937 1.20884 0.87947 0.94847 1.51935 0.90706 1.18863 0.97718 0.87991 0.97816 1.20320 0.90770 0.98250 0.91510 1.21104 0.99909 0.93708 0.98915 1.20895 0.99833 0.94938 0.96067 1.21193 1.08245 0.86881 0.94835 1.98317 1.87622 1.20362 1.98948 1.18180 1.00718 0.90688 0.83881 1.84862 1.35428 1.73751 1.35848 1.21318 1.01673 0.92676 0.99627 0.92462 0.95051 0.95344 0.84976 0.85299 0.76040 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.96 55.43 0.77 -26.19 14 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 14 3 Si 0.88 20.69 27.47 -169.99 -4.67 16.02 14 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 14 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 14 6 H -0.26 -5.92 6.54 56.52 0.37 -5.55 14 7 C -0.52 -14.29 9.65 -34.44 -0.33 -14.63 14 8 H 0.07 2.28 7.98 -52.48 -0.42 1.86 14 9 C 0.01 0.30 4.17 -29.04 -0.12 0.18 14 10 C -0.01 -0.16 5.07 -104.64 -0.53 -0.69 14 11 C -0.12 -2.09 9.70 -39.56 -0.38 -2.47 14 12 C -0.10 -1.56 9.83 -39.57 -0.39 -1.95 14 13 C -0.08 -1.37 6.33 -39.36 -0.25 -1.62 14 14 Cl -0.08 -1.15 28.50 -51.86 -1.48 -2.63 14 15 C 0.11 1.86 6.70 -39.19 -0.26 1.60 14 16 O -0.49 -7.22 12.96 -19.52 -0.25 -7.48 14 17 C -0.13 -2.48 9.64 -39.44 -0.38 -2.86 14 18 H 0.27 7.45 8.31 -40.82 -0.34 7.11 14 19 H 0.03 0.70 7.14 -51.93 -0.37 0.33 14 20 H 0.03 0.62 7.51 -51.93 -0.39 0.23 14 21 H 0.13 2.16 8.06 -52.49 -0.42 1.74 14 22 H 0.13 1.70 8.06 -52.49 -0.42 1.28 14 23 H 0.38 3.70 9.06 45.56 0.41 4.12 14 24 H 0.14 2.41 8.06 -52.49 -0.42 1.99 14 LS Contribution 234.38 15.07 3.53 3.53 Total: -1.00 -30.40 234.38 -6.04 -36.44 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -1.20 Total: 0.86 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -2.75 Total: -20.54 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.77 Total: -26.19 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.25 Total: -7.48 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.48 Total: -2.63 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.40 -6.04 -36.44 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214290450.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.360 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds