Wall clock time and date at job start Sun Mar 29 2020 21:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47339 * 2 1 4 4 H 1.09005 * 109.46566 * 54.77315 * 3 2 1 5 5 C 1.50693 * 109.47756 * 174.77526 * 3 2 1 6 6 H 1.08003 * 120.00366 * 114.62610 * 5 3 2 7 7 C 1.37876 * 119.99779 * 294.63737 * 5 3 2 8 8 N 1.31515 * 119.99856 * 171.20467 * 7 5 3 9 9 Si 1.86800 * 120.00200 * 351.19742 * 7 5 3 10 10 H 1.48492 * 109.47393 * 266.21311 * 9 7 5 11 11 H 1.48495 * 109.46728 * 26.21845 * 9 7 5 12 12 H 1.48500 * 109.46830 * 146.21094 * 9 7 5 13 13 N 1.46906 * 109.47129 * 294.77808 * 3 2 1 14 14 C 1.46895 * 110.99895 * 131.06388 * 13 3 2 15 15 C 1.53005 * 109.47104 * 185.02873 * 14 13 3 16 16 C 1.53000 * 112.84854 * 48.80365 * 15 14 13 17 17 C 1.53783 * 113.61501 * 277.50002 * 15 14 13 18 18 C 1.53778 * 87.07913 * 220.01791 * 17 15 14 19 19 C 1.53778 * 113.61334 * 180.02562 * 15 14 13 20 20 H 1.08999 * 109.47352 * 294.76596 * 1 2 3 21 21 H 1.09002 * 109.47277 * 54.76429 * 1 2 3 22 22 H 1.08997 * 109.47012 * 174.76690 * 1 2 3 23 23 H 1.09002 * 109.47339 * 240.00654 * 2 1 3 24 24 H 1.08998 * 109.47588 * 120.00032 * 2 1 3 25 25 H 0.97003 * 120.00420 * 179.97438 * 8 7 5 26 26 H 1.00894 * 110.99880 * 255.01892 * 13 3 2 27 27 H 1.09000 * 109.47540 * 305.02926 * 14 13 3 28 28 H 1.09006 * 109.47132 * 65.03048 * 14 13 3 29 29 H 1.09000 * 109.46669 * 69.66611 * 16 15 14 30 30 H 1.08998 * 109.47277 * 189.66478 * 16 15 14 31 31 H 1.08999 * 109.47380 * 309.67337 * 16 15 14 32 32 H 1.09004 * 113.61002 * 334.56415 * 17 15 14 33 33 H 1.08998 * 113.61384 * 105.46660 * 17 15 14 34 34 H 1.08994 * 113.61489 * 270.88155 * 18 17 15 35 35 H 1.09000 * 113.61290 * 139.98368 * 18 17 15 36 36 H 1.08999 * 113.61393 * 254.52518 * 19 15 14 37 37 H 1.08993 * 113.61942 * 25.43554 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9826 0.8395 5 6 3.5414 1.4446 0.1294 6 1 4.1529 1.8091 -0.6828 7 6 4.1344 0.9809 1.2845 8 7 5.4386 0.8197 1.3351 9 14 3.0853 0.5820 2.7778 10 1 3.0282 1.7653 3.6731 11 1 1.7122 0.2275 2.3375 12 1 3.6818 -0.5642 3.5097 13 7 1.6560 2.0977 -1.2575 14 6 1.0351 3.4043 -1.0021 15 6 0.5366 3.9986 -2.3210 16 6 -0.2862 3.0071 -3.1461 17 6 1.6333 4.7134 -3.1280 18 6 0.5804 5.7834 -3.4617 19 6 -0.1329 5.3739 -2.1628 20 1 -0.3634 0.4305 0.9331 21 1 -0.3634 0.5929 -0.8394 22 1 -0.3633 -1.0234 -0.0937 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 5.8559 0.4939 2.1479 26 1 2.4490 2.1886 -1.8747 27 1 0.1948 3.2800 -0.3191 28 1 1.7697 4.0747 -0.5561 29 1 -1.2394 2.8247 -2.6499 30 1 -0.4664 3.4214 -4.1380 31 1 0.2608 2.0688 -3.2380 32 1 2.4544 5.0851 -2.5149 33 1 1.9737 4.1498 -3.9966 34 1 0.0069 5.5655 -4.3626 35 1 0.9709 6.8009 -3.4432 36 1 -1.2188 5.3437 -2.2522 37 1 0.2055 5.9261 -1.2861 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219494852.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:49 Heat of formation + Delta-G solvation = -11.167874 kcal Electronic energy + Delta-G solvation = -14737.002165 eV Core-core repulsion = 12513.630875 eV Total energy + Delta-G solvation = -2223.371290 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.46041 -37.79544 -34.38723 -33.17235 -30.34890 -28.77921 -26.68651 -26.27496 -24.23480 -22.67438 -21.42336 -19.24818 -18.81931 -17.12497 -16.41579 -15.89028 -15.70997 -15.23771 -14.95069 -14.53151 -14.23532 -13.76069 -13.44768 -13.28813 -12.93759 -12.84897 -12.76997 -12.59102 -12.46536 -12.16313 -11.91842 -11.66033 -11.28437 -11.21057 -11.03853 -10.88421 -10.81093 -10.49533 -9.00249 -8.33444 -6.36615 1.31567 1.35769 1.46581 2.32823 3.02566 3.50736 3.76819 3.84353 4.03076 4.08461 4.40866 4.47723 4.59335 4.70531 4.77085 4.79295 4.84766 4.90874 4.94663 5.03622 5.07255 5.11089 5.18525 5.24835 5.29574 5.37089 5.46014 5.50567 5.56621 5.59523 5.77056 5.80481 6.07044 6.47578 6.66685 6.88060 7.31764 8.82811 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037242 B = 0.008741 C = 0.007892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.665138 B = 3202.437463 C = 3547.043959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C 0.192 3.808 4 H 0.014 0.986 5 C -0.542 4.542 6 H 0.032 0.968 7 C 0.016 3.984 8 N -0.947 5.947 9 Si 0.924 3.076 10 H -0.282 1.282 11 H -0.212 1.212 12 H -0.287 1.287 13 N -0.666 5.666 14 C 0.079 3.921 15 C -0.080 4.080 16 C -0.110 4.110 17 C -0.142 4.142 18 C -0.127 4.127 19 C -0.130 4.130 20 H 0.039 0.961 21 H 0.066 0.934 22 H 0.054 0.946 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.264 0.736 26 H 0.330 0.670 27 H 0.061 0.939 28 H 0.004 0.996 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.704 6.045 -6.463 16.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.151 4.151 3 C 0.082 3.918 4 H 0.032 0.968 5 C -0.581 4.581 6 H 0.050 0.950 7 C -0.182 4.182 8 N -0.586 5.586 9 Si 0.748 3.252 10 H -0.208 1.208 11 H -0.135 1.135 12 H -0.213 1.213 13 N -0.294 5.294 14 C -0.051 4.051 15 C -0.080 4.080 16 C -0.167 4.167 17 C -0.179 4.179 18 C -0.165 4.165 19 C -0.167 4.167 20 H 0.058 0.942 21 H 0.085 0.915 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.146 0.854 27 H 0.079 0.921 28 H 0.022 0.978 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.182 5.651 -6.408 16.556 hybrid contribution 1.494 0.294 1.256 1.974 sum -12.688 5.944 -5.151 14.928 Atomic orbital electron populations 1.21646 0.95169 1.01081 1.01268 1.21842 0.95874 0.97607 0.99733 1.19361 0.91332 0.92422 0.88692 0.96807 1.21959 0.92518 1.42118 1.01495 0.94955 1.25858 0.95855 0.94487 1.02025 1.70096 1.11820 1.47721 1.28999 0.86298 0.82342 0.77791 0.78762 1.20843 1.13467 1.21277 1.60686 1.33683 1.20635 1.14419 1.21909 0.96858 0.89647 0.96715 1.21893 0.96938 0.94596 0.94610 1.21368 0.98720 0.98412 0.98239 1.23025 0.96655 0.98403 0.99835 1.22745 0.97328 0.98400 0.97978 1.22967 1.00245 0.95326 0.98209 0.94187 0.91542 0.92727 0.93615 0.94063 0.92676 0.85391 0.92081 0.97786 0.92615 0.92074 0.92287 0.92056 0.91683 0.88953 0.91116 0.90316 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.86 71.98 0.71 -3.88 16 2 C -0.11 -4.77 4.80 30.59 0.15 -4.62 16 3 C 0.19 8.86 1.72 44.17 0.08 8.93 16 4 H 0.01 0.66 6.35 -2.38 -0.02 0.65 16 5 C -0.54 -30.81 9.08 25.60 0.23 -30.58 16 6 H 0.03 2.04 7.64 -2.91 -0.02 2.02 16 7 C 0.02 0.92 5.41 84.65 0.46 1.38 16 8 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 9 Si 0.92 43.69 25.75 68.60 1.77 45.46 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.21 -9.00 5.10 99.48 0.51 -8.50 16 12 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 13 N -0.67 -26.37 4.64 -495.43 -2.30 -28.67 16 14 C 0.08 2.72 4.89 86.31 0.42 3.14 16 15 C -0.08 -2.16 1.15 -51.65 -0.06 -2.22 16 16 C -0.11 -2.73 8.93 71.98 0.64 -2.08 16 17 C -0.14 -3.72 7.21 31.12 0.22 -3.50 16 18 C -0.13 -2.61 7.73 31.11 0.24 -2.37 16 19 C -0.13 -2.90 7.23 31.11 0.22 -2.67 16 20 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.07 2.19 7.62 -2.39 -0.02 2.17 16 22 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.04 1.83 4.40 -2.39 -0.01 1.82 16 25 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 26 H 0.33 13.96 7.95 -89.70 -0.71 13.25 16 27 H 0.06 2.07 8.02 -2.39 -0.02 2.06 16 28 H 0.00 0.15 7.94 -2.38 -0.02 0.13 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.27 7.34 -2.39 -0.02 1.26 16 31 H 0.06 1.67 7.27 -2.39 -0.02 1.66 16 32 H 0.06 1.81 7.96 -2.39 -0.02 1.79 16 33 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 34 H 0.09 1.63 7.64 -2.39 -0.02 1.61 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 37 H 0.07 1.70 8.10 -2.39 -0.02 1.68 16 Total: -1.00 -62.35 285.12 3.19 -59.16 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.11 Total: 21.82 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 3.32 Total: -38.47 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -2.00 Total: -87.97 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.77 Total: 45.46 kcal Total: -62.35 3.19 -59.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219494852.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.989 kcal (2) G-P(sol) polarization free energy of solvation -62.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds