Wall clock time and date at job start Sun Mar 29 2020 21:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47383 * 2 1 4 4 C 1.53008 * 109.46982 * 240.00036 * 2 1 3 5 5 C 1.52992 * 109.46946 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47228 * 60.00345 * 5 4 2 7 7 H 1.08998 * 109.47209 * 60.00078 * 6 5 4 8 8 C 1.53002 * 109.47314 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.47140 * 299.99468 * 6 5 4 10 10 H 1.08999 * 109.47074 * 179.97438 * 9 6 5 11 11 N 1.46902 * 109.47084 * 300.00394 * 9 6 5 12 12 C 1.46904 * 110.99713 * 204.99678 * 11 9 6 13 13 C 1.50696 * 109.46794 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99717 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.52998 * 109.47314 * 120.00306 * 2 1 3 22 22 H 1.08993 * 109.46875 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46398 * 299.99822 * 1 2 3 24 24 H 1.08999 * 109.47194 * 59.99539 * 1 2 3 25 25 H 1.08999 * 109.46809 * 60.00189 * 4 2 1 26 26 H 1.08993 * 109.46883 * 300.00108 * 4 2 1 27 27 H 1.09007 * 109.47506 * 300.00017 * 5 4 2 28 28 H 1.09000 * 109.47186 * 180.02562 * 5 4 2 29 29 H 1.08992 * 109.47500 * 179.97438 * 8 6 5 30 30 H 1.09007 * 109.46847 * 299.99693 * 8 6 5 31 31 H 1.09001 * 109.47419 * 59.99225 * 8 6 5 32 32 H 1.00893 * 111.00212 * 81.04184 * 11 9 6 33 33 H 1.09005 * 109.47078 * 59.99805 * 12 11 9 34 34 H 1.09002 * 109.47005 * 300.00021 * 12 11 9 35 35 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.46912 * 59.99715 * 21 2 1 37 37 H 1.08998 * 109.46813 * 299.99874 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5699 -0.7207 -1.2496 6 6 4.0805 -1.4417 -0.0005 7 1 3.7176 -2.4695 -0.0003 8 6 5.6105 -1.4417 -0.0011 9 6 3.5706 -0.7204 1.2489 10 1 3.9339 -1.2343 2.1388 11 7 4.0598 0.6648 1.2485 12 6 4.1227 1.2011 2.6147 13 6 4.6282 2.6202 2.5743 14 1 4.8774 3.0780 1.6285 15 6 4.7716 3.3345 3.7450 16 7 5.2123 4.5731 3.7098 17 14 4.3399 2.5428 5.3809 18 1 2.9104 2.7975 5.6922 19 1 4.5757 1.0789 5.3000 20 1 5.1905 3.1227 6.4512 21 6 2.0401 -0.7213 1.2492 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.6767 -0.2074 -2.1392 26 1 1.6766 -1.7489 -1.2493 27 1 3.9330 0.3071 -1.2499 28 1 3.9333 -1.2341 -2.1398 29 1 5.9742 -1.9549 0.8890 30 1 5.9734 -1.9558 -0.8911 31 1 5.9739 -0.4140 -0.0016 32 1 3.4894 1.2495 0.6564 33 1 4.7994 0.5916 3.2136 34 1 3.1274 1.1820 3.0587 35 1 5.3128 5.0757 4.5333 36 1 1.6767 -1.7489 1.2491 37 1 1.6767 -0.2075 2.1391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221730187.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:56 Heat of formation + Delta-G solvation = -31.651119 kcal Electronic energy + Delta-G solvation = -14854.564423 eV Core-core repulsion = 12630.304913 eV Total energy + Delta-G solvation = -2224.259510 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.30419 -34.41377 -33.34812 -32.10886 -29.53487 -28.23432 -26.19535 -23.90024 -22.23378 -21.41948 -20.28501 -18.50651 -16.69489 -15.21838 -15.15015 -14.21886 -14.08102 -13.91100 -13.65625 -13.05407 -12.60480 -12.57556 -12.13780 -12.04409 -11.79160 -11.55597 -11.36706 -11.20518 -10.87743 -10.69971 -10.52652 -10.23184 -10.20642 -9.88593 -9.69179 -9.54658 -9.20141 -8.57457 -7.33525 -6.03567 -4.00659 3.29432 3.37067 3.40240 4.44084 4.88150 4.92018 5.00820 5.25273 5.30816 5.32930 5.40502 5.62294 5.72955 5.76986 5.78753 5.87333 5.93683 5.98485 6.10716 6.15727 6.20320 6.30150 6.33192 6.40281 6.46670 6.61657 6.66753 6.74745 6.87176 6.95920 7.11352 7.67303 7.98673 8.44446 8.70233 9.05023 9.59218 11.09874 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032294 B = 0.008994 C = 0.008126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.823308 B = 3112.271884 C = 3444.919167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.075 0.925 4 C -0.110 4.110 5 C -0.114 4.114 6 C -0.075 4.075 7 H 0.057 0.943 8 C -0.138 4.138 9 C 0.087 3.913 10 H 0.068 0.932 11 N -0.669 5.669 12 C 0.164 3.836 13 C -0.513 4.513 14 H 0.078 0.922 15 C 0.067 3.933 16 N -0.902 5.902 17 Si 0.877 3.123 18 H -0.279 1.279 19 H -0.267 1.267 20 H -0.286 1.286 21 C -0.143 4.143 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.335 0.665 33 H 0.024 0.976 34 H -0.022 1.022 35 H 0.263 0.737 36 H 0.057 0.943 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.642 -12.174 -7.416 15.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.093 0.907 4 C -0.148 4.148 5 C -0.151 4.151 6 C -0.094 4.094 7 H 0.075 0.925 8 C -0.195 4.195 9 C -0.025 4.025 10 H 0.086 0.914 11 N -0.301 5.301 12 C 0.036 3.964 13 C -0.551 4.551 14 H 0.096 0.904 15 C -0.134 4.134 16 N -0.541 5.541 17 Si 0.705 3.295 18 H -0.204 1.204 19 H -0.192 1.192 20 H -0.212 1.212 21 C -0.182 4.182 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.155 0.845 33 H 0.042 0.958 34 H -0.005 1.005 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.917 -12.186 -7.302 15.390 hybrid contribution -1.215 -0.160 1.261 1.758 sum -7.132 -12.346 -6.042 15.486 Atomic orbital electron populations 1.21806 0.95729 1.01172 1.01454 1.21129 0.94982 1.00249 0.94992 0.90677 1.21569 0.96171 0.99911 0.97134 1.21557 0.94629 1.01892 0.97064 1.21059 0.96098 0.97519 0.94739 0.92501 1.21693 0.94936 1.03227 0.99629 1.21578 0.91189 0.92475 0.97211 0.91417 1.60623 1.55715 1.00666 1.13103 1.20012 0.94146 0.96163 0.86077 1.21079 1.43363 0.95359 0.95296 0.90402 1.24910 0.94895 0.94694 0.98888 1.69905 1.46852 1.09503 1.27816 0.86829 0.78465 0.80144 0.84082 1.20450 1.19184 1.21236 1.22259 0.98163 1.00158 0.97669 0.93171 0.92838 0.92965 0.92515 0.92651 0.90829 0.92847 0.93665 0.94302 0.90619 0.84516 0.95808 1.00475 0.92734 0.92448 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 2 C -0.09 -1.30 2.47 -90.62 -0.22 -1.53 16 3 H 0.08 1.17 6.26 -51.93 -0.32 0.85 16 4 C -0.11 -1.36 5.20 -26.73 -0.14 -1.50 16 5 C -0.11 -1.52 4.96 -26.74 -0.13 -1.66 16 6 C -0.08 -1.08 2.54 -90.62 -0.23 -1.31 16 7 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 8 C -0.14 -2.04 9.04 37.16 0.34 -1.70 16 9 C 0.09 1.45 2.30 -67.68 -0.16 1.30 16 10 H 0.07 1.20 7.80 -51.93 -0.41 0.79 16 11 N -0.67 -13.62 4.99 -107.96 -0.54 -14.16 16 12 C 0.16 3.99 4.31 -4.98 -0.02 3.97 16 13 C -0.51 -14.74 9.87 -34.44 -0.34 -15.08 16 14 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 17 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 C -0.14 -2.15 4.80 -26.71 -0.13 -2.28 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.11 7.21 -51.93 -0.37 0.73 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 1.30 7.61 -51.93 -0.39 0.90 16 32 H 0.33 6.73 5.55 -39.30 -0.22 6.52 16 33 H 0.02 0.60 7.11 -51.93 -0.37 0.23 16 34 H -0.02 -0.54 6.86 -51.93 -0.36 -0.90 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.01 7.46 -51.93 -0.39 0.62 16 LS Contribution 280.97 15.07 4.23 4.23 Total: -1.00 -29.52 280.97 -7.64 -37.15 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.65 Total: 2.01 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -0.79 Total: -19.30 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.23 Total: -41.33 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.52 -7.64 -37.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221730187.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.503 kcal (2) G-P(sol) polarization free energy of solvation -29.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds