Wall clock time and date at job start Sun Mar 29 2020 21:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47383 * 2 1 4 4 C 1.53008 * 109.46982 * 240.00036 * 2 1 3 5 5 C 1.52992 * 109.46946 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47228 * 60.00345 * 5 4 2 7 7 H 1.08998 * 109.47209 * 60.00078 * 6 5 4 8 8 C 1.53002 * 109.47314 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.47140 * 299.99468 * 6 5 4 10 10 H 1.08999 * 109.47074 * 179.97438 * 9 6 5 11 11 N 1.46902 * 109.47084 * 300.00394 * 9 6 5 12 12 C 1.46904 * 110.99713 * 204.99678 * 11 9 6 13 13 C 1.50696 * 109.46794 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99717 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.52998 * 109.47314 * 120.00306 * 2 1 3 22 22 H 1.08993 * 109.46875 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46398 * 299.99822 * 1 2 3 24 24 H 1.08999 * 109.47194 * 59.99539 * 1 2 3 25 25 H 1.08999 * 109.46809 * 60.00189 * 4 2 1 26 26 H 1.08993 * 109.46883 * 300.00108 * 4 2 1 27 27 H 1.09007 * 109.47506 * 300.00017 * 5 4 2 28 28 H 1.09000 * 109.47186 * 180.02562 * 5 4 2 29 29 H 1.08992 * 109.47500 * 179.97438 * 8 6 5 30 30 H 1.09007 * 109.46847 * 299.99693 * 8 6 5 31 31 H 1.09001 * 109.47419 * 59.99225 * 8 6 5 32 32 H 1.00893 * 111.00212 * 81.04184 * 11 9 6 33 33 H 1.09005 * 109.47078 * 59.99805 * 12 11 9 34 34 H 1.09002 * 109.47005 * 300.00021 * 12 11 9 35 35 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.46912 * 59.99715 * 21 2 1 37 37 H 1.08998 * 109.46813 * 299.99874 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5699 -0.7207 -1.2496 6 6 4.0805 -1.4417 -0.0005 7 1 3.7176 -2.4695 -0.0003 8 6 5.6105 -1.4417 -0.0011 9 6 3.5706 -0.7204 1.2489 10 1 3.9339 -1.2343 2.1388 11 7 4.0598 0.6648 1.2485 12 6 4.1227 1.2011 2.6147 13 6 4.6282 2.6202 2.5743 14 1 4.8774 3.0780 1.6285 15 6 4.7716 3.3345 3.7450 16 7 5.2123 4.5731 3.7098 17 14 4.3399 2.5428 5.3809 18 1 2.9104 2.7975 5.6922 19 1 4.5757 1.0789 5.3000 20 1 5.1905 3.1227 6.4512 21 6 2.0401 -0.7213 1.2492 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.6767 -0.2074 -2.1392 26 1 1.6766 -1.7489 -1.2493 27 1 3.9330 0.3071 -1.2499 28 1 3.9333 -1.2341 -2.1398 29 1 5.9742 -1.9549 0.8890 30 1 5.9734 -1.9558 -0.8911 31 1 5.9739 -0.4140 -0.0016 32 1 3.4894 1.2495 0.6564 33 1 4.7994 0.5916 3.2136 34 1 3.1274 1.1820 3.0587 35 1 5.3128 5.0757 4.5333 36 1 1.6767 -1.7489 1.2491 37 1 1.6767 -0.2075 2.1391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221730187.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:56 Heat of formation + Delta-G solvation = -49.743914 kcal Electronic energy + Delta-G solvation = -14855.348986 eV Core-core repulsion = 12630.304913 eV Total energy + Delta-G solvation = -2225.044073 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.54210 -36.05797 -34.70607 -34.00227 -30.97689 -29.46878 -27.97898 -25.03124 -23.60621 -23.18258 -21.48543 -19.82908 -18.80310 -16.87246 -16.41644 -15.91024 -15.52641 -15.20220 -14.78860 -14.67529 -14.34336 -13.88509 -13.75678 -13.30946 -13.07326 -12.90063 -12.64347 -12.51810 -12.44566 -12.19241 -11.90967 -11.79300 -11.56958 -11.44051 -11.20613 -10.93007 -10.82597 -10.72047 -8.97928 -8.31115 -6.34539 1.31468 1.33740 1.45135 2.32261 3.02973 3.57431 3.80212 3.86755 3.97424 4.21726 4.26631 4.50217 4.61477 4.62676 4.73585 4.74745 4.81114 4.87178 4.89107 4.99303 5.01581 5.10863 5.14811 5.20439 5.22312 5.33459 5.39918 5.48807 5.53383 5.56822 5.61177 5.75734 6.02548 6.62113 6.69759 6.83681 7.30576 8.85769 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032294 B = 0.008994 C = 0.008126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.823308 B = 3112.271884 C = 3444.919167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.047 0.953 4 C -0.104 4.104 5 C -0.112 4.112 6 C -0.070 4.070 7 H 0.083 0.917 8 C -0.135 4.135 9 C 0.082 3.918 10 H 0.058 0.942 11 N -0.675 5.675 12 C 0.178 3.822 13 C -0.524 4.524 14 H 0.036 0.964 15 C 0.008 3.992 16 N -0.947 5.947 17 Si 0.950 3.050 18 H -0.267 1.267 19 H -0.253 1.253 20 H -0.280 1.280 21 C -0.138 4.138 22 H 0.067 0.933 23 H 0.043 0.957 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.334 0.666 33 H 0.019 0.981 34 H -0.020 1.020 35 H 0.267 0.733 36 H 0.082 0.918 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.982 -14.743 -7.510 18.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 H 0.065 0.935 4 C -0.141 4.141 5 C -0.150 4.150 6 C -0.089 4.089 7 H 0.101 0.899 8 C -0.193 4.193 9 C -0.029 4.029 10 H 0.076 0.924 11 N -0.307 5.307 12 C 0.049 3.951 13 C -0.562 4.562 14 H 0.054 0.946 15 C -0.190 4.190 16 N -0.588 5.588 17 Si 0.773 3.227 18 H -0.192 1.192 19 H -0.176 1.176 20 H -0.205 1.205 21 C -0.177 4.177 22 H 0.086 0.914 23 H 0.062 0.938 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.154 0.846 33 H 0.037 0.963 34 H -0.002 1.002 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.263 -14.773 -7.417 18.056 hybrid contribution -0.755 0.672 1.192 1.563 sum -8.019 -14.101 -6.225 17.375 Atomic orbital electron populations 1.21768 0.94138 1.02315 1.01527 1.21122 0.96326 0.98729 0.95302 0.93471 1.21531 0.95064 1.00910 0.96583 1.21537 0.95626 1.00475 0.97355 1.21061 0.95598 0.98512 0.93760 0.89900 1.21659 0.95507 1.01446 1.00673 1.21721 0.92712 0.90072 0.98352 0.92352 1.60540 1.56781 1.02554 1.10783 1.19712 0.93564 0.93486 0.88334 1.21349 1.43403 0.97609 0.93847 0.94597 1.25867 0.94656 0.95161 1.03287 1.70057 1.48270 1.11262 1.29214 0.85677 0.78683 0.79737 0.78580 1.19223 1.17641 1.20535 1.22193 0.96518 1.01517 0.97481 0.91426 0.93827 0.91939 0.91396 0.90661 0.93399 0.90856 0.93907 0.91998 0.93766 0.84573 0.96297 1.00237 0.92411 0.89947 0.94140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.19 71.98 0.66 -2.37 16 2 C -0.10 -2.48 2.47 -10.79 -0.03 -2.51 16 3 H 0.05 1.48 6.26 -2.38 -0.01 1.46 16 4 C -0.10 -2.23 5.20 30.59 0.16 -2.08 16 5 C -0.11 -2.76 4.96 30.59 0.15 -2.61 16 6 C -0.07 -1.86 2.54 -10.79 -0.03 -1.89 16 7 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 8 C -0.14 -3.84 9.04 71.98 0.65 -3.19 16 9 C 0.08 2.65 2.30 44.93 0.10 2.75 16 10 H 0.06 1.99 7.80 -2.39 -0.02 1.98 16 11 N -0.67 -27.93 4.99 -495.47 -2.47 -30.41 16 12 C 0.18 8.76 4.31 85.55 0.37 9.13 16 13 C -0.52 -31.16 9.87 25.60 0.25 -30.91 16 14 H 0.04 2.37 8.06 -2.91 -0.02 2.34 16 15 C 0.01 0.46 5.47 84.66 0.46 0.92 16 16 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 17 Si 0.95 45.28 27.47 68.60 1.88 47.16 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 C -0.14 -3.90 4.80 30.61 0.15 -3.75 16 22 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.43 7.21 -2.38 -0.02 1.41 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.04 1.52 7.61 -2.39 -0.02 1.50 16 32 H 0.33 13.93 5.55 -89.70 -0.50 13.43 16 33 H 0.02 0.95 7.11 -2.38 -0.02 0.94 16 34 H -0.02 -0.97 6.86 -2.39 -0.02 -0.98 16 35 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.04 1.29 7.46 -2.39 -0.02 1.28 16 Total: -1.00 -65.00 280.97 3.07 -61.93 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.46 Total: 17.84 kcal Atomic # 6 Polarization: -39.41 SS G_CDS: 2.90 Total: -36.51 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -2.17 Total: -90.42 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Total: -65.00 3.07 -61.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221730187.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.181 kcal (2) G-P(sol) polarization free energy of solvation -64.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds