Wall clock time and date at job start Sun Mar 29 2020 21:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46986 * 2 1 4 4 C 1.53006 * 109.46977 * 240.00260 * 2 1 3 5 5 C 1.52997 * 109.47127 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 2 7 7 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 10 10 H 1.08992 * 109.47554 * 59.99639 * 9 6 5 11 11 N 1.46899 * 109.46973 * 179.97438 * 9 6 5 12 12 C 1.46899 * 111.00116 * 204.99731 * 11 9 6 13 13 C 1.50691 * 109.47397 * 180.02562 * 12 11 9 14 14 H 1.08002 * 120.00047 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00304 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99746 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00286 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47318 * 59.99777 * 17 15 13 19 19 H 1.48501 * 109.47047 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46933 * 299.99556 * 17 15 13 21 21 C 1.52997 * 109.47415 * 120.00118 * 2 1 3 22 22 H 1.08992 * 109.47063 * 299.99832 * 1 2 3 23 23 H 1.08996 * 109.47407 * 60.00229 * 1 2 3 24 24 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46505 * 179.97438 * 4 2 1 26 26 H 1.08996 * 109.46884 * 60.00293 * 4 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 5 4 2 28 28 H 1.09001 * 109.46832 * 60.00321 * 5 4 2 29 29 H 1.09002 * 109.47508 * 59.99571 * 8 6 5 30 30 H 1.09000 * 109.47437 * 180.02562 * 8 6 5 31 31 H 1.09001 * 109.47109 * 299.99380 * 8 6 5 32 32 H 1.00907 * 110.99937 * 81.04509 * 11 9 6 33 33 H 1.09003 * 109.47153 * 300.00096 * 12 11 9 34 34 H 1.09003 * 109.46741 * 59.99694 * 12 11 9 35 35 H 0.96998 * 120.00262 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47045 * 300.00068 * 21 2 1 37 37 H 1.09001 * 109.47375 * 179.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0401 -2.8849 -0.0001 7 1 3.1301 -2.8849 -0.0001 8 6 1.5307 -4.3276 -0.0004 9 6 1.5301 -2.1638 1.2491 10 1 0.4402 -2.1638 1.2492 11 7 2.0193 -2.8566 2.4485 12 6 1.1355 -2.6107 3.5959 13 6 1.6686 -3.3352 4.8049 14 1 2.5737 -3.9195 4.7288 15 6 1.0009 -3.2521 6.0084 16 7 -0.1010 -2.5401 6.1012 17 14 1.6620 -4.1496 7.5074 18 1 3.0266 -3.6538 7.8193 19 1 0.7685 -3.9010 8.6672 20 1 1.7168 -5.6069 7.2275 21 6 2.0401 -0.7212 1.2492 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 -0.7208 -1.2495 26 1 1.6767 -0.2073 -2.1392 27 1 1.8938 -2.6777 -2.1391 28 1 0.4401 -2.1637 -1.2493 29 1 1.8944 -4.8412 -0.8904 30 1 1.8936 -4.8414 0.8898 31 1 0.4407 -4.3281 -0.0006 32 1 2.9688 -2.5879 2.6594 33 1 1.0964 -1.5410 3.8017 34 1 0.1335 -2.9735 3.3669 35 1 -0.5710 -2.4819 6.9478 36 1 1.6768 -0.2074 2.1392 37 1 3.1301 -0.7216 1.2489 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221730307.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:58 Heat of formation + Delta-G solvation = -35.977555 kcal Electronic energy + Delta-G solvation = -14730.969416 eV Core-core repulsion = 12506.522297 eV Total energy + Delta-G solvation = -2224.447119 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.25196 -34.68982 -33.01300 -32.16320 -29.11986 -27.69769 -25.83281 -24.68372 -22.33314 -20.99207 -20.39192 -18.49916 -16.43782 -15.28495 -14.79340 -14.28340 -14.06862 -13.69488 -13.54298 -13.37754 -12.54703 -12.35314 -12.03757 -11.80936 -11.68050 -11.26934 -11.10446 -10.98111 -10.77395 -10.72554 -10.59890 -10.50403 -10.12734 -9.92525 -9.76986 -9.52769 -9.08393 -8.44221 -7.14490 -5.99800 -4.01465 3.35240 3.38941 3.42189 4.45476 4.90904 4.95281 4.98719 5.35181 5.35982 5.44675 5.58314 5.59580 5.69969 5.80136 5.87598 5.90403 6.00879 6.08496 6.14888 6.21361 6.23975 6.38415 6.42829 6.43841 6.52850 6.60097 6.75834 6.89482 6.95224 7.34110 7.51246 7.83446 8.18999 8.48076 8.69921 9.08349 9.63259 11.11158 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.044751 B = 0.007322 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.538441 B = 3823.065198 C = 4144.918085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 H 0.061 0.939 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.077 4.077 7 H 0.061 0.939 8 C -0.135 4.135 9 C 0.091 3.909 10 H 0.072 0.928 11 N -0.683 5.683 12 C 0.197 3.803 13 C -0.514 4.514 14 H 0.061 0.939 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.143 4.143 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.326 0.674 33 H -0.015 1.015 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.062 0.938 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 3.222 -13.241 13.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 H 0.079 0.921 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.096 4.096 7 H 0.080 0.920 8 C -0.193 4.193 9 C -0.020 4.020 10 H 0.090 0.910 11 N -0.312 5.312 12 C 0.070 3.930 13 C -0.552 4.552 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.182 4.182 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.143 0.857 33 H 0.003 0.997 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.425 2.655 -13.244 13.724 hybrid contribution 0.460 0.592 1.156 1.377 sum 2.885 3.247 -12.089 12.845 Atomic orbital electron populations 1.21932 0.95488 1.02316 1.01012 1.21038 0.95890 0.98541 0.95158 0.92098 1.21548 1.00234 0.96013 0.97156 1.21653 1.00920 0.95050 0.97743 1.21070 0.99771 0.95211 0.93593 0.92015 1.21670 1.00411 0.95865 1.01316 1.21579 0.99385 0.89607 0.91381 0.91001 1.60742 1.06021 1.59537 1.04873 1.19528 0.92445 0.94390 0.86656 1.21182 1.10203 1.30127 0.93731 0.92112 1.24985 0.95016 0.95607 0.98963 1.69953 1.17271 1.40634 1.25949 0.86567 0.78635 0.80252 0.81962 1.20327 1.21380 1.20183 1.22323 1.00267 0.98233 0.97402 0.92805 0.93384 0.91837 0.92383 0.92667 0.92609 0.91896 0.94439 0.90804 0.93656 0.85724 0.99686 0.95686 0.92932 0.91889 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.50 37.16 0.32 -1.69 16 2 C -0.09 -1.16 3.19 -90.62 -0.29 -1.45 16 3 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 4 C -0.11 -1.34 5.45 -26.73 -0.15 -1.49 16 5 C -0.12 -1.47 4.93 -26.73 -0.13 -1.60 16 6 C -0.08 -1.16 2.43 -90.62 -0.22 -1.38 16 7 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 8 C -0.14 -2.09 9.04 37.16 0.34 -1.75 16 9 C 0.09 1.62 1.64 -67.71 -0.11 1.51 16 10 H 0.07 1.39 6.08 -51.93 -0.32 1.07 16 11 N -0.68 -14.63 5.47 -108.00 -0.59 -15.22 16 12 C 0.20 5.18 5.24 -4.98 -0.03 5.15 16 13 C -0.51 -14.71 9.32 -34.44 -0.32 -15.03 16 14 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 17 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 C -0.14 -2.30 4.70 -26.73 -0.13 -2.43 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.89 4.81 -51.93 -0.25 0.64 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.81 6.43 -51.93 -0.33 0.47 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 1.30 7.60 -51.93 -0.39 0.91 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.33 6.80 8.46 -39.29 -0.33 6.46 16 33 H -0.01 -0.41 7.44 -51.93 -0.39 -0.80 16 34 H 0.03 0.72 8.05 -51.93 -0.42 0.30 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.06 1.15 7.45 -51.93 -0.39 0.76 16 37 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 LS Contribution 283.38 15.07 4.27 4.27 Total: -1.00 -29.12 283.38 -8.01 -37.14 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.59 Total: 1.94 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -0.82 Total: -18.65 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.15 Total: -41.61 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.12 -8.01 -37.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221730307.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.159 kcal (2) G-P(sol) polarization free energy of solvation -29.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds