Wall clock time and date at job start Sun Mar 29 2020 21:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46986 * 2 1 4 4 C 1.53006 * 109.46977 * 240.00260 * 2 1 3 5 5 C 1.52997 * 109.47127 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 2 7 7 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 10 10 H 1.08992 * 109.47554 * 59.99639 * 9 6 5 11 11 N 1.46899 * 109.46973 * 179.97438 * 9 6 5 12 12 C 1.46899 * 111.00116 * 204.99731 * 11 9 6 13 13 C 1.50691 * 109.47397 * 180.02562 * 12 11 9 14 14 H 1.08002 * 120.00047 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00304 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99746 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00286 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47318 * 59.99777 * 17 15 13 19 19 H 1.48501 * 109.47047 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46933 * 299.99556 * 17 15 13 21 21 C 1.52997 * 109.47415 * 120.00118 * 2 1 3 22 22 H 1.08992 * 109.47063 * 299.99832 * 1 2 3 23 23 H 1.08996 * 109.47407 * 60.00229 * 1 2 3 24 24 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46505 * 179.97438 * 4 2 1 26 26 H 1.08996 * 109.46884 * 60.00293 * 4 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 5 4 2 28 28 H 1.09001 * 109.46832 * 60.00321 * 5 4 2 29 29 H 1.09002 * 109.47508 * 59.99571 * 8 6 5 30 30 H 1.09000 * 109.47437 * 180.02562 * 8 6 5 31 31 H 1.09001 * 109.47109 * 299.99380 * 8 6 5 32 32 H 1.00907 * 110.99937 * 81.04509 * 11 9 6 33 33 H 1.09003 * 109.47153 * 300.00096 * 12 11 9 34 34 H 1.09003 * 109.46741 * 59.99694 * 12 11 9 35 35 H 0.96998 * 120.00262 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47045 * 300.00068 * 21 2 1 37 37 H 1.09001 * 109.47375 * 179.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0401 -2.8849 -0.0001 7 1 3.1301 -2.8849 -0.0001 8 6 1.5307 -4.3276 -0.0004 9 6 1.5301 -2.1638 1.2491 10 1 0.4402 -2.1638 1.2492 11 7 2.0193 -2.8566 2.4485 12 6 1.1355 -2.6107 3.5959 13 6 1.6686 -3.3352 4.8049 14 1 2.5737 -3.9195 4.7288 15 6 1.0009 -3.2521 6.0084 16 7 -0.1010 -2.5401 6.1012 17 14 1.6620 -4.1496 7.5074 18 1 3.0266 -3.6538 7.8193 19 1 0.7685 -3.9010 8.6672 20 1 1.7168 -5.6069 7.2275 21 6 2.0401 -0.7212 1.2492 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 -0.7208 -1.2495 26 1 1.6767 -0.2073 -2.1392 27 1 1.8938 -2.6777 -2.1391 28 1 0.4401 -2.1637 -1.2493 29 1 1.8944 -4.8412 -0.8904 30 1 1.8936 -4.8414 0.8898 31 1 0.4407 -4.3281 -0.0006 32 1 2.9688 -2.5879 2.6594 33 1 1.0964 -1.5410 3.8017 34 1 0.1335 -2.9735 3.3669 35 1 -0.5710 -2.4819 6.9478 36 1 1.6768 -0.2074 2.1392 37 1 3.1301 -0.7216 1.2489 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221730307.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:57 Heat of formation + Delta-G solvation = -53.647642 kcal Electronic energy + Delta-G solvation = -14731.735648 eV Core-core repulsion = 12506.522297 eV Total energy + Delta-G solvation = -2225.213351 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.52421 -36.42138 -34.61153 -33.86252 -30.63868 -28.99311 -27.66509 -25.93937 -24.10966 -22.60977 -21.66251 -19.70877 -18.52989 -16.75884 -16.65489 -15.73020 -15.36707 -15.16341 -14.86485 -14.72670 -14.20922 -13.97906 -13.56086 -13.42749 -12.92751 -12.79215 -12.68018 -12.63310 -12.29268 -12.18904 -12.06577 -11.83962 -11.65194 -11.38776 -11.18280 -10.98015 -10.76022 -10.63623 -8.95839 -8.22495 -6.34053 1.39584 1.43481 1.51467 2.39351 3.10193 3.57061 3.74139 3.85615 4.11433 4.25332 4.30903 4.45584 4.49742 4.57754 4.64385 4.75649 4.86979 4.92750 4.97458 5.06776 5.10225 5.14431 5.16543 5.22776 5.26498 5.35267 5.37607 5.43883 5.56971 5.60573 5.67727 5.69312 6.04517 6.50846 6.76968 6.92984 7.37113 8.88727 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.044751 B = 0.007322 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.538441 B = 3823.065198 C = 4144.918085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 H 0.075 0.925 4 C -0.107 4.107 5 C -0.111 4.111 6 C -0.071 4.071 7 H 0.068 0.932 8 C -0.133 4.133 9 C 0.090 3.910 10 H 0.049 0.951 11 N -0.681 5.681 12 C 0.216 3.784 13 C -0.537 4.537 14 H 0.064 0.936 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.973 3.027 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.268 1.268 21 C -0.138 4.138 22 H 0.035 0.965 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.331 0.669 33 H -0.042 1.042 34 H -0.008 1.008 35 H 0.265 0.735 36 H 0.030 0.970 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.173 3.046 -14.592 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 H 0.093 0.907 4 C -0.144 4.144 5 C -0.149 4.149 6 C -0.091 4.091 7 H 0.086 0.914 8 C -0.190 4.190 9 C -0.020 4.020 10 H 0.067 0.933 11 N -0.309 5.309 12 C 0.088 3.912 13 C -0.575 4.575 14 H 0.082 0.918 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.797 3.203 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.193 1.193 21 C -0.177 4.177 22 H 0.054 0.946 23 H 0.092 0.908 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.148 0.852 33 H -0.025 1.025 34 H 0.010 0.990 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.728 2.482 -14.623 15.294 hybrid contribution 0.026 0.662 1.543 1.679 sum 3.754 3.145 -13.080 13.967 Atomic orbital electron populations 1.21926 0.95708 1.01646 1.01416 1.21048 0.95692 0.99154 0.94434 0.90690 1.21535 1.00780 0.95213 0.96871 1.21630 1.00791 0.95583 0.96909 1.21037 1.00010 0.94854 0.93154 0.91398 1.21636 0.99878 0.96216 1.01303 1.21672 0.98193 0.91054 0.91081 0.93263 1.60652 1.05432 1.60525 1.04325 1.19103 0.91712 0.92169 0.88185 1.21558 1.10553 1.30561 0.94840 0.91800 1.25974 0.95109 0.96270 1.02426 1.70093 1.18565 1.41865 1.26982 0.85384 0.78333 0.79007 0.77559 1.19072 1.20746 1.19303 1.22230 1.00643 0.96971 0.97884 0.94551 0.90821 0.93070 0.91469 0.90228 0.90239 0.92207 0.91644 0.93562 0.94482 0.85231 1.02487 0.99035 0.92665 0.95112 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 8.50 71.98 0.61 -3.27 16 2 C -0.08 -2.11 3.19 -10.79 -0.03 -2.15 16 3 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.11 -2.17 5.45 30.60 0.17 -2.01 16 5 C -0.11 -2.50 4.93 30.59 0.15 -2.35 16 6 C -0.07 -2.06 2.43 -10.79 -0.03 -2.08 16 7 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 8 C -0.13 -3.99 9.04 71.98 0.65 -3.34 16 9 C 0.09 3.26 1.64 44.92 0.07 3.34 16 10 H 0.05 2.00 6.08 -2.39 -0.01 1.99 16 11 N -0.68 -30.14 5.47 -495.60 -2.71 -32.86 16 12 C 0.22 12.00 5.24 85.55 0.45 12.45 16 13 C -0.54 -31.51 9.32 25.60 0.24 -31.27 16 14 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 15 C 0.00 0.01 5.46 84.66 0.46 0.48 16 16 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 17 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 C -0.14 -4.48 4.70 30.59 0.14 -4.33 16 22 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.05 1.44 4.81 -2.39 -0.01 1.43 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.40 6.43 -2.39 -0.02 1.39 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 1.63 7.60 -2.39 -0.02 1.61 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.33 14.07 8.46 -89.69 -0.76 13.31 16 33 H -0.04 -2.55 7.44 -2.39 -0.02 -2.56 16 34 H -0.01 -0.52 8.05 -2.39 -0.02 -0.54 16 35 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.03 1.17 7.45 -2.39 -0.02 1.15 16 37 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 Total: -1.00 -64.22 283.38 2.74 -61.48 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.26 Total: 16.32 kcal Atomic # 6 Polarization: -37.42 SS G_CDS: 2.89 Total: -34.54 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -2.43 Total: -90.47 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -64.22 2.74 -61.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221730307.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.830 kcal (2) G-P(sol) polarization free energy of solvation -64.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds