Wall clock time and date at job start Sun Mar 29 2020 21:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38304 * 119.94327 * 2 1 4 4 C 1.38078 * 120.08443 * 180.23780 * 3 2 1 5 5 C 1.38913 * 119.95591 * 359.45856 * 4 3 2 6 6 O 1.35748 * 120.06460 * 180.30499 * 5 4 3 7 7 C 1.34828 * 117.00151 * 174.46707 * 6 5 4 8 8 H 1.07994 * 120.00141 * 5.05739 * 7 6 5 9 9 C 1.38659 * 119.99835 * 185.05715 * 7 6 5 10 10 N 1.31553 * 119.99836 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99816 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47098 * 89.99837 * 11 9 7 13 13 H 1.48505 * 109.46636 * 209.99864 * 11 9 7 14 14 H 1.48500 * 109.47313 * 329.99513 * 11 9 7 15 15 C 1.38840 * 119.87528 * 0.28360 * 5 4 3 16 16 C 1.38235 * 119.91723 * 359.97438 * 15 5 4 17 17 Cl 1.73600 * 119.97637 * 180.02562 * 16 15 5 18 18 H 1.09005 * 109.47178 * 270.28333 * 1 2 3 19 19 H 1.08998 * 109.47027 * 30.27818 * 1 2 3 20 20 H 1.09000 * 109.47503 * 150.27848 * 1 2 3 21 21 H 1.07999 * 119.95591 * 359.97438 * 3 2 1 22 22 H 1.07999 * 120.02366 * 179.74007 * 4 3 2 23 23 H 0.97012 * 119.99839 * 179.97438 * 10 9 7 24 24 H 1.08004 * 120.04078 * 179.97438 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1984 0.0000 4 6 3.5781 1.2018 -0.0050 5 6 4.2747 0.0000 0.0014 6 8 5.6322 0.0008 0.0028 7 6 6.2449 -1.1939 0.1249 8 1 5.6605 -2.1021 0.1337 9 6 7.6253 -1.2567 0.2392 10 7 8.3372 -0.1504 0.2280 11 14 8.4743 -2.9120 0.4076 12 1 8.8107 -3.4353 -0.9408 13 1 9.7193 -2.7513 1.2011 14 1 7.5679 -3.8654 1.0966 15 6 3.5799 -1.2020 0.0068 16 6 2.1976 -1.1994 0.0064 17 17 1.3274 -2.7015 0.0138 18 1 -0.3634 0.0051 1.0277 19 1 -0.3633 0.8875 -0.5181 20 1 -0.3634 -0.8925 -0.5095 21 1 1.6556 2.1328 -0.0004 22 1 4.1161 2.1382 -0.0092 23 1 9.3030 -0.1943 0.3083 24 1 4.1189 -2.1380 0.0114 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223132854.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:05 Heat of formation + Delta-G solvation = -20.911999 kcal Electronic energy + Delta-G solvation = -11500.995654 eV Core-core repulsion = 9212.693046 eV Total energy + Delta-G solvation = -2288.302608 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.034 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.19114 -37.01062 -35.72443 -32.50571 -31.09882 -30.07599 -26.21648 -24.89391 -22.12144 -20.69800 -18.17653 -17.15235 -15.06117 -14.75254 -14.51447 -13.98682 -13.92842 -13.15839 -13.05073 -12.86277 -11.99907 -11.82903 -11.57652 -11.21012 -11.14545 -10.83956 -10.50027 -10.40911 -10.28681 -9.51983 -8.87490 -8.17066 -7.28108 -6.52506 -4.11765 1.91827 2.13034 2.68130 3.09959 3.11357 3.16276 3.91571 4.34868 4.99936 5.14429 5.39194 5.52841 5.74862 5.96050 5.98802 6.12963 6.26179 6.46265 6.62018 6.88964 7.02513 7.10217 7.28824 7.57369 7.91189 8.92645 9.58469 10.64839 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.041332 B = 0.009055 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.273675 B = 3091.597570 C = 3750.918597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.178 4.178 3 C -0.065 4.065 4 C -0.185 4.185 5 C 0.159 3.841 6 O -0.170 6.170 7 C -0.395 4.395 8 H 0.093 0.907 9 C 0.042 3.958 10 N -0.859 5.859 11 Si 0.941 3.059 12 H -0.272 1.272 13 H -0.276 1.276 14 H -0.266 1.266 15 C -0.226 4.226 16 C 0.020 3.980 17 Cl -0.095 7.095 18 H 0.058 0.942 19 H 0.057 0.943 20 H 0.061 0.939 21 H 0.122 0.878 22 H 0.123 0.877 23 H 0.272 0.728 24 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.026 -1.514 -0.122 10.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.180 4.180 3 C -0.083 4.083 4 C -0.204 4.204 5 C 0.104 3.896 6 O -0.073 6.073 7 C -0.471 4.471 8 H 0.111 0.889 9 C -0.163 4.163 10 N -0.493 5.493 11 Si 0.766 3.234 12 H -0.197 1.197 13 H -0.201 1.201 14 H -0.190 1.190 15 C -0.246 4.246 16 C -0.007 4.007 17 Cl -0.067 7.067 18 H 0.076 0.924 19 H 0.076 0.924 20 H 0.080 0.920 21 H 0.139 0.861 22 H 0.141 0.859 23 H 0.081 0.919 24 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.666 -1.403 -0.122 9.768 hybrid contribution 0.420 -1.025 0.088 1.111 sum -9.246 -2.428 -0.034 9.559 Atomic orbital electron populations 1.20576 0.91563 1.01960 1.01361 1.19210 0.95640 0.91377 1.11777 1.20467 0.92963 0.96289 0.98587 1.20322 0.93423 0.96481 1.10177 1.19192 0.85094 0.92479 0.92825 1.83998 1.12322 1.33113 1.77830 1.21359 0.90249 0.83045 1.52455 0.88924 1.25306 0.95352 0.99423 0.96243 1.70037 1.06976 1.27060 1.45271 0.85700 0.78933 0.79987 0.78802 1.19741 1.20135 1.19050 1.21000 0.91885 0.99606 1.12086 1.20459 0.91556 0.85140 1.03496 1.98293 1.77193 1.34178 1.97016 0.92367 0.92388 0.91999 0.86058 0.85867 0.91857 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 9.61 36.00 0.35 -1.01 14 2 C -0.18 -3.13 5.89 -104.54 -0.62 -3.75 14 3 C -0.06 -1.13 9.69 -39.62 -0.38 -1.51 14 4 C -0.18 -3.79 9.99 -39.39 -0.39 -4.18 14 5 C 0.16 3.79 6.65 -39.11 -0.26 3.53 14 6 O -0.17 -4.76 9.76 0.06 0.00 -4.76 14 7 C -0.40 -10.93 9.49 30.89 0.29 -10.64 14 8 H 0.09 2.39 5.20 -52.49 -0.27 2.12 14 9 C 0.04 1.13 5.49 -17.52 -0.10 1.04 14 10 N -0.86 -24.82 13.67 55.48 0.76 -24.06 14 11 Si 0.94 20.34 29.55 -169.99 -5.02 15.32 14 12 H -0.27 -5.73 7.11 56.52 0.40 -5.33 14 13 H -0.28 -5.83 7.11 56.52 0.40 -5.42 14 14 H -0.27 -5.56 7.11 56.52 0.40 -5.16 14 15 C -0.23 -4.98 8.95 -39.36 -0.35 -5.33 14 16 C 0.02 0.39 6.31 -39.52 -0.25 0.14 14 17 Cl -0.10 -1.60 27.29 -51.86 -1.41 -3.01 14 18 H 0.06 0.75 8.14 -51.93 -0.42 0.33 14 19 H 0.06 0.69 8.09 -51.93 -0.42 0.27 14 20 H 0.06 0.84 6.90 -51.93 -0.36 0.48 14 21 H 0.12 1.70 8.06 -52.49 -0.42 1.28 14 22 H 0.12 2.39 8.06 -52.49 -0.42 1.96 14 23 H 0.27 7.18 8.31 -40.81 -0.34 6.84 14 24 H 0.14 3.07 5.64 -52.48 -0.30 2.78 14 LS Contribution 232.05 15.07 3.50 3.50 Total: -1.00 -28.96 232.05 -5.64 -34.60 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -1.75 Total: 0.13 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -1.71 Total: -21.72 kcal Atomic # 7 Polarization: -24.82 SS G_CDS: 0.76 Total: -24.06 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: 0.00 Total: -4.76 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -1.41 Total: -3.01 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -28.96 -5.64 -34.60 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223132854.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.689 kcal (2) G-P(sol) polarization free energy of solvation -28.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds