Wall clock time and date at job start Sun Mar 29 2020 21:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47368 * 2 1 4 4 C 1.53002 * 109.47346 * 240.00188 * 2 1 3 5 5 C 1.52997 * 109.46817 * 299.99737 * 4 2 1 6 6 C 1.53005 * 109.47452 * 300.00239 * 5 4 2 7 7 H 1.09002 * 109.46935 * 300.00125 * 6 5 4 8 8 N 1.46898 * 109.47342 * 180.02562 * 6 5 4 9 9 C 1.46901 * 111.00188 * 84.99554 * 8 6 5 10 10 C 1.50697 * 109.47004 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00304 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99916 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00182 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00110 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47002 * 60.00214 * 14 12 10 16 16 H 1.48500 * 109.46944 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46759 * 300.00188 * 14 12 10 18 18 C 1.52999 * 109.47159 * 59.99536 * 6 5 4 19 19 H 1.09002 * 109.46716 * 60.00455 * 18 6 5 20 20 C 1.52992 * 109.46961 * 180.02562 * 18 6 5 21 21 C 1.52997 * 109.47317 * 300.00546 * 18 6 5 22 22 H 1.08992 * 109.47554 * 299.99850 * 1 2 3 23 23 H 1.09004 * 109.47108 * 60.00101 * 1 2 3 24 24 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47662 * 59.99968 * 4 2 1 26 26 H 1.09002 * 109.47075 * 180.02562 * 4 2 1 27 27 H 1.09002 * 109.47153 * 60.00231 * 5 4 2 28 28 H 1.09001 * 109.47289 * 180.02562 * 5 4 2 29 29 H 1.00897 * 110.99635 * 208.95326 * 8 6 5 30 30 H 1.08997 * 109.47146 * 300.00477 * 9 8 6 31 31 H 1.09006 * 109.46899 * 60.00327 * 9 8 6 32 32 H 0.96992 * 120.00588 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.47066 * 180.02562 * 20 18 6 34 34 H 1.08996 * 109.47747 * 300.00196 * 20 18 6 35 35 H 1.09002 * 109.47103 * 60.00608 * 20 18 6 36 36 H 1.09002 * 109.47153 * 299.99641 * 21 18 6 37 37 H 1.09001 * 109.46832 * 179.97438 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5301 -2.1637 -1.2492 6 6 2.0400 -2.8850 0.0001 7 1 3.1300 -2.8849 0.0001 8 7 1.5509 -4.2701 -0.0002 9 6 2.4350 -5.1405 -0.7868 10 6 1.9027 -6.5501 -0.7635 11 1 0.9978 -6.7767 -0.2192 12 6 2.5702 -7.5504 -1.4379 13 7 3.6718 -7.2745 -2.1012 14 14 1.9100 -9.2976 -1.4097 15 1 0.5449 -9.3204 -1.9937 16 1 2.8038 -10.1775 -2.2047 17 1 1.8567 -9.7839 -0.0076 18 6 1.5301 -2.1637 1.2493 19 1 0.4401 -2.1637 1.2493 20 6 2.0405 -2.8846 2.4985 21 6 2.0400 -0.7212 1.2493 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6768 -0.2075 -2.1392 26 1 3.1300 -0.7216 -1.2490 27 1 0.4401 -2.1637 -1.2493 28 1 1.8938 -2.6777 -2.1390 29 1 1.4465 -4.6169 0.9415 30 1 2.4746 -4.7836 -1.8159 31 1 3.4369 -5.1238 -0.3577 32 1 4.1417 -7.9781 -2.5754 33 1 1.6768 -2.3710 3.3884 34 1 1.6776 -3.9123 2.4988 35 1 3.1305 -2.8841 2.4983 36 1 3.1300 -0.7212 1.2493 37 1 1.6763 -0.2073 2.1390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226180033.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:52 Heat of formation + Delta-G solvation = -33.803671 kcal Electronic energy + Delta-G solvation = -14675.493569 eV Core-core repulsion = 12451.140717 eV Total energy + Delta-G solvation = -2224.352852 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.27620 -34.92202 -32.83658 -31.93786 -29.83244 -26.84853 -26.35015 -25.03082 -22.25514 -20.85702 -20.35041 -18.40002 -16.41987 -15.26796 -14.75704 -14.61444 -14.41895 -13.89374 -13.66704 -12.82575 -12.65726 -12.17657 -12.05364 -11.93191 -11.72500 -11.58322 -11.20048 -10.99541 -10.89780 -10.72015 -10.60590 -10.49825 -10.09832 -9.91974 -9.70042 -9.42880 -9.07036 -8.43876 -7.18680 -5.99390 -4.01176 3.35502 3.39123 3.42429 4.45685 4.85106 4.91795 4.98837 5.31110 5.36146 5.38464 5.48670 5.53030 5.71173 5.78208 5.82050 5.87020 5.94510 6.02474 6.11482 6.14502 6.19046 6.30387 6.35040 6.38309 6.55535 6.59109 6.68469 6.79123 6.93963 7.36355 7.49982 7.84173 8.20125 8.50338 8.70927 9.08700 9.63576 11.11705 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.049279 B = 0.006883 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.060391 B = 4067.299589 C = 4275.619386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 H 0.061 0.939 4 C -0.114 4.114 5 C -0.107 4.107 6 C 0.094 3.906 7 H 0.031 0.969 8 N -0.689 5.689 9 C 0.196 3.804 10 C -0.514 4.514 11 H 0.061 0.939 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.094 4.094 19 H 0.077 0.923 20 C -0.151 4.151 21 C -0.106 4.106 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.328 0.672 30 H 0.027 0.973 31 H -0.016 1.016 32 H 0.261 0.739 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.497 13.146 5.586 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 H 0.080 0.920 4 C -0.152 4.152 5 C -0.145 4.145 6 C -0.017 4.017 7 H 0.049 0.951 8 N -0.321 5.321 9 C 0.069 3.931 10 C -0.553 4.553 11 H 0.079 0.921 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.726 3.274 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.113 4.113 19 H 0.095 0.905 20 C -0.209 4.209 21 C -0.144 4.144 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.148 0.852 30 H 0.045 0.955 31 H 0.001 0.999 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.790 13.140 4.949 14.544 hybrid contribution 0.602 -1.089 0.467 1.329 sum -3.188 12.051 5.417 13.592 Atomic orbital electron populations 1.21942 0.95483 1.02612 1.00745 1.21079 0.95917 0.98444 0.95409 0.92014 1.21582 1.00314 0.96467 0.96858 1.21533 1.01128 0.93400 0.98409 1.21431 0.96395 0.90443 0.93431 0.95089 1.60718 1.52775 1.00496 1.18160 1.19552 0.89346 0.90976 0.93212 1.21182 1.09794 0.92659 1.31629 0.92113 1.24989 0.94955 0.99198 0.95431 1.69952 1.17300 1.33270 1.33304 0.86560 0.78783 0.84043 0.77997 1.20174 1.21362 1.20305 1.21313 1.01003 0.94183 0.94751 0.90472 1.21887 1.01017 1.00823 0.97171 1.21587 1.00322 0.95370 0.97076 0.93357 0.93202 0.91367 0.92430 0.92442 0.91491 0.91985 0.85242 0.95480 0.99862 0.92914 0.93080 0.92004 0.93045 0.92316 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.50 37.16 0.32 -1.41 16 2 C -0.09 -1.08 3.19 -90.62 -0.29 -1.37 16 3 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.11 -1.56 5.45 -26.73 -0.15 -1.71 16 5 C -0.11 -1.81 5.15 -26.73 -0.14 -1.95 16 6 C 0.09 1.70 1.97 -67.71 -0.13 1.57 16 7 H 0.03 0.62 7.80 -51.93 -0.40 0.22 16 8 N -0.69 -15.12 6.30 -107.99 -0.68 -15.80 16 9 C 0.20 5.26 5.24 -4.98 -0.03 5.24 16 10 C -0.51 -14.88 9.32 -34.44 -0.32 -15.20 16 11 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 14 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C -0.09 -1.37 2.11 -90.63 -0.19 -1.57 16 19 H 0.08 1.14 6.43 -51.93 -0.33 0.81 16 20 C -0.15 -2.13 8.96 37.15 0.33 -1.79 16 21 C -0.11 -1.32 4.73 -26.73 -0.13 -1.45 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.88 4.81 -51.93 -0.25 0.63 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.13 6.43 -51.93 -0.33 0.80 16 28 H 0.06 1.19 7.45 -51.93 -0.39 0.80 16 29 H 0.33 6.91 6.16 -39.29 -0.24 6.67 16 30 H 0.03 0.78 7.43 -51.93 -0.39 0.40 16 31 H -0.02 -0.47 8.06 -51.93 -0.42 -0.89 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.93 6.21 -51.93 -0.32 0.61 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 280.70 15.07 4.23 4.23 Total: -1.00 -29.74 280.70 -7.98 -37.73 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.43 Total: 1.56 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -0.82 Total: -18.12 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.06 Total: -42.39 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.74 -7.98 -37.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226180033.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.924 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds