Wall clock time and date at job start Sun Mar 29 2020 21:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47368 * 2 1 4 4 C 1.53002 * 109.47346 * 240.00188 * 2 1 3 5 5 C 1.52997 * 109.46817 * 299.99737 * 4 2 1 6 6 C 1.53005 * 109.47452 * 300.00239 * 5 4 2 7 7 H 1.09002 * 109.46935 * 300.00125 * 6 5 4 8 8 N 1.46898 * 109.47342 * 180.02562 * 6 5 4 9 9 C 1.46901 * 111.00188 * 84.99554 * 8 6 5 10 10 C 1.50697 * 109.47004 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00304 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99916 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00182 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00110 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47002 * 60.00214 * 14 12 10 16 16 H 1.48500 * 109.46944 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46759 * 300.00188 * 14 12 10 18 18 C 1.52999 * 109.47159 * 59.99536 * 6 5 4 19 19 H 1.09002 * 109.46716 * 60.00455 * 18 6 5 20 20 C 1.52992 * 109.46961 * 180.02562 * 18 6 5 21 21 C 1.52997 * 109.47317 * 300.00546 * 18 6 5 22 22 H 1.08992 * 109.47554 * 299.99850 * 1 2 3 23 23 H 1.09004 * 109.47108 * 60.00101 * 1 2 3 24 24 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47662 * 59.99968 * 4 2 1 26 26 H 1.09002 * 109.47075 * 180.02562 * 4 2 1 27 27 H 1.09002 * 109.47153 * 60.00231 * 5 4 2 28 28 H 1.09001 * 109.47289 * 180.02562 * 5 4 2 29 29 H 1.00897 * 110.99635 * 208.95326 * 8 6 5 30 30 H 1.08997 * 109.47146 * 300.00477 * 9 8 6 31 31 H 1.09006 * 109.46899 * 60.00327 * 9 8 6 32 32 H 0.96992 * 120.00588 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.47066 * 180.02562 * 20 18 6 34 34 H 1.08996 * 109.47747 * 300.00196 * 20 18 6 35 35 H 1.09002 * 109.47103 * 60.00608 * 20 18 6 36 36 H 1.09002 * 109.47153 * 299.99641 * 21 18 6 37 37 H 1.09001 * 109.46832 * 179.97438 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5301 -2.1637 -1.2492 6 6 2.0400 -2.8850 0.0001 7 1 3.1300 -2.8849 0.0001 8 7 1.5509 -4.2701 -0.0002 9 6 2.4350 -5.1405 -0.7868 10 6 1.9027 -6.5501 -0.7635 11 1 0.9978 -6.7767 -0.2192 12 6 2.5702 -7.5504 -1.4379 13 7 3.6718 -7.2745 -2.1012 14 14 1.9100 -9.2976 -1.4097 15 1 0.5449 -9.3204 -1.9937 16 1 2.8038 -10.1775 -2.2047 17 1 1.8567 -9.7839 -0.0076 18 6 1.5301 -2.1637 1.2493 19 1 0.4401 -2.1637 1.2493 20 6 2.0405 -2.8846 2.4985 21 6 2.0400 -0.7212 1.2493 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6768 -0.2075 -2.1392 26 1 3.1300 -0.7216 -1.2490 27 1 0.4401 -2.1637 -1.2493 28 1 1.8938 -2.6777 -2.1390 29 1 1.4465 -4.6169 0.9415 30 1 2.4746 -4.7836 -1.8159 31 1 3.4369 -5.1238 -0.3577 32 1 4.1417 -7.9781 -2.5754 33 1 1.6768 -2.3710 3.3884 34 1 1.6776 -3.9123 2.4988 35 1 3.1305 -2.8841 2.4983 36 1 3.1300 -0.7212 1.2493 37 1 1.6763 -0.2073 2.1390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226180033.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:51 Heat of formation + Delta-G solvation = -52.311949 kcal Electronic energy + Delta-G solvation = -14676.296148 eV Core-core repulsion = 12451.140717 eV Total energy + Delta-G solvation = -2225.155431 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.53847 -36.59752 -34.69052 -33.42151 -31.34236 -28.52691 -27.48243 -26.53128 -24.12459 -22.33776 -21.71764 -19.58684 -18.54895 -16.80631 -16.60515 -15.96781 -15.63915 -15.46928 -14.98181 -14.34394 -14.11399 -13.76385 -13.59371 -13.52141 -12.95644 -12.84617 -12.69369 -12.63941 -12.51465 -12.12482 -12.08026 -11.87949 -11.68318 -11.38500 -11.08215 -10.83922 -10.77074 -10.66042 -9.08634 -8.23753 -6.35846 1.39286 1.43567 1.51619 2.38813 3.08923 3.49768 3.77485 3.86093 4.04035 4.20499 4.32864 4.39448 4.51737 4.57374 4.65396 4.72939 4.85959 4.92026 4.97511 5.04157 5.08744 5.12899 5.16970 5.21084 5.24886 5.27533 5.36843 5.47427 5.49261 5.51591 5.62319 5.71418 6.03665 6.49425 6.75267 6.91549 7.35556 8.87862 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.049279 B = 0.006883 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.060391 B = 4067.299589 C = 4275.619386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 H 0.086 0.914 4 C -0.110 4.110 5 C -0.103 4.103 6 C 0.090 3.910 7 H 0.008 0.992 8 N -0.687 5.687 9 C 0.214 3.786 10 C -0.539 4.539 11 H 0.064 0.936 12 C 0.000 4.000 13 N -0.935 5.935 14 Si 0.975 3.025 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.265 1.265 18 C -0.086 4.086 19 H 0.081 0.919 20 C -0.151 4.151 21 C -0.102 4.102 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.334 0.666 30 H -0.004 1.004 31 H -0.047 1.047 32 H 0.265 0.735 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.043 0.957 36 H 0.055 0.945 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.725 13.992 6.783 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 H 0.104 0.896 4 C -0.148 4.148 5 C -0.142 4.142 6 C -0.020 4.020 7 H 0.026 0.974 8 N -0.319 5.319 9 C 0.086 3.914 10 C -0.577 4.577 11 H 0.083 0.917 12 C -0.198 4.198 13 N -0.576 5.576 14 Si 0.799 3.201 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.190 1.190 18 C -0.105 4.105 19 H 0.099 0.901 20 C -0.208 4.208 21 C -0.140 4.140 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.154 0.846 30 H 0.014 0.986 31 H -0.030 1.030 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.027 14.009 6.162 16.109 hybrid contribution 1.004 -1.310 0.077 1.652 sum -4.024 12.699 6.239 14.710 Atomic orbital electron populations 1.21916 0.94782 1.01801 1.02084 1.21093 0.96433 0.99198 0.93742 0.89599 1.21560 1.00006 0.94231 0.98968 1.21493 1.01117 0.95386 0.96165 1.21584 0.95141 0.88845 0.96414 0.97416 1.60635 1.51481 1.01752 1.18073 1.19151 0.88644 0.91577 0.92014 1.21548 1.10193 0.93753 1.32175 0.91747 1.26002 0.95015 1.04203 0.94581 1.70094 1.18601 1.34986 1.33876 0.85353 0.78270 0.77830 0.78647 1.19254 1.20666 1.18959 1.21265 1.01107 0.95405 0.92704 0.90064 1.21883 1.00579 1.00233 0.98107 1.21590 1.00176 0.93680 0.98557 0.91562 0.92421 0.93183 0.90991 0.92952 0.91292 0.95542 0.84611 0.98601 1.02954 0.92589 0.90121 0.93557 0.93760 0.92653 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.50 71.98 0.61 -2.35 16 2 C -0.09 -1.83 3.19 -10.79 -0.03 -1.87 16 3 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.11 -2.90 5.45 30.59 0.17 -2.74 16 5 C -0.10 -3.61 5.15 30.60 0.16 -3.46 16 6 C 0.09 3.38 1.97 44.92 0.09 3.47 16 7 H 0.01 0.33 7.80 -2.39 -0.02 0.31 16 8 N -0.69 -31.26 6.30 -495.57 -3.12 -34.38 16 9 C 0.21 12.13 5.24 85.56 0.45 12.57 16 10 C -0.54 -31.94 9.32 25.60 0.24 -31.70 16 11 H 0.06 3.69 7.81 -2.91 -0.02 3.66 16 12 C 0.00 0.00 5.46 84.66 0.46 0.47 16 13 N -0.94 -58.30 13.29 21.45 0.28 -58.01 16 14 Si 0.98 45.28 29.54 68.60 2.03 47.30 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 18 C -0.09 -2.42 2.11 -10.80 -0.02 -2.45 16 19 H 0.08 2.26 6.43 -2.39 -0.02 2.25 16 20 C -0.15 -4.04 8.96 71.98 0.64 -3.40 16 21 C -0.10 -2.29 4.73 30.59 0.14 -2.14 16 22 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 24 H 0.05 1.18 4.81 -2.39 -0.01 1.17 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 2.36 6.43 -2.39 -0.02 2.34 16 28 H 0.03 1.07 7.45 -2.39 -0.02 1.06 16 29 H 0.33 14.42 6.16 -89.70 -0.55 13.86 16 30 H 0.00 -0.26 7.43 -2.39 -0.02 -0.27 16 31 H -0.05 -2.89 8.06 -2.38 -0.02 -2.91 16 32 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 34 H 0.05 1.37 6.21 -2.39 -0.01 1.36 16 35 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -65.65 280.70 2.57 -63.08 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.47 Total: 15.60 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 2.91 Total: -33.60 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -2.84 Total: -92.39 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -65.65 2.57 -63.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226180033.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.773 kcal (2) G-P(sol) polarization free energy of solvation -65.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds